ScalaBLAST 2.0: Rapid and robust BLAST calculations on multiprocessor systems

Bioinformatics

Volumn 29, Issue 6, 2013, Pages 797-798

  Oehmen, Christopher S ^a   Baxter, Douglas J ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER PROGRAM; METHODOLOGY; SEQUENCE ALIGNMENT;

ALGORITHMS; COMPUTATIONAL BIOLOGY; SEQUENCE ALIGNMENT; SOFTWARE;

EID: 84875196601     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt013     Document Type: Article

References (3)

1. Altschul,S. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. Darling,A. et al. (2003) The design, implementation and evaluation of mpiBLAST. In: Proceedings of the Cluster World 2003. Linux Clusters Institute, San Jose, CA.
3. Oehmen,C. and Nieplocha,J. (2006) ScalaBLAST: a scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis. IEEE Trans. Parallel Dist. Sys., 17, 740-749.