-
1
-
-
57349189421
-
Small toxic proteins and the antisense RNAs that repress them
-
PMID:19052321
-
Fozo EM, Hemm MR, Storz G. Small toxic proteins and the antisense RNAs that repress them. Microbiol Mol Biol Rev 2008; 72:579-89; PMID:19052321; http://dx.doi.org/10.1128/MMBR.00025-08.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 579-589
-
-
Fozo, E.M.1
Hemm, M.R.2
Storz, G.3
-
2
-
-
0021992145
-
Stable inheritance of plasmid R1 requires two different loci
-
Gerdes K, Larsen JE, Molin S. Stable inheritance of plasmid R1 requires two different loci. J Bacteriol 1985; 161:292-8; PMID:2981804. (Pubitemid 15157342)
-
(1985)
Journal of Bacteriology
, vol.161
, Issue.1
, pp. 292-298
-
-
Gerdes, K.1
Larsen, J.E.L.2
Molin, S.3
-
4
-
-
0029983026
-
Functional analysis of the Enterococcus faecalis plasmid pAD1-encoded stability determinant par
-
DOI 10.1111/j.1365-2958.1996.tb02488.x
-
Weaver KE, Jensen KD, Colwell A, Sriram SI. Functional analysis of the Enterococcus faecalis plas-mid pAD1-encoded stability determinant par. Mol Microbiol 1996; 20:53-63; PMID:8861204; http://dx.doi.org/10.1111/j.1365-2958. 1996.tb02488.x. (Pubitemid 26124789)
-
(1996)
Molecular Microbiology
, vol.20
, Issue.1
, pp. 53-63
-
-
Weaver, K.E.1
Jensen, K.D.2
Colwell, A.3
Sriram, S.L.4
-
5
-
-
0028044007
-
Identification and characterization of an Enterococcus faecalis plasmid pAD1-encoded stability determinant which produces two small RNA molecules necessary for its function
-
DOI 10.1006/plas.1994.1053
-
Weaver KE, Tritle DJ. Identification and characterization of an Enterococcus faecalis plasmid pAD1-encod-ed stability determinant which produces two small RNA molecules necessary for its function. Plasmid 1994; 32:168-81; PMID:7531349; http://dx.doi. org/10.1006/plas.1994.1053. (Pubitemid 24324182)
-
(1994)
Plasmid
, vol.32
, Issue.2
, pp. 168-181
-
-
Weaver, K.E.1
-
6
-
-
55349129970
-
Repression of small toxic protein synthesis by the Sib and OhsC small RNAs
-
PMID:18710431
-
Fozo EM, Kawano M, Fontaine F, Kaya Y, Mendieta KS, Jones KL, et al. Repression of small toxic protein synthesis by the Sib and OhsC small RNAs. Mol Microbiol 2008; 70:1076-93; PMID:18710431; http://dx.doi.org/10.1111/j.1365- 2958.2008.06394.x.
-
(2008)
Mol Microbiol
, vol.70
, pp. 1076-1093
-
-
Fozo, E.M.1
Kawano, M.2
Fontaine, F.3
Kaya, Y.4
Mendieta, K.S.5
Jones, K.L.6
-
7
-
-
77951619556
-
Abundance of type i toxin-antitoxin systems in bacteria: Searches for new candidates and discovery of novel families
-
PMID:20156992
-
Fozo EM, Makarova KS, Shabalina SA, Yutin N, Koonin EV, Storz G. Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families. Nucleic Acids Res 2010; 38:3743-59; PMID:20156992; http://dx.doi. org/10.1093/nar/gkq054.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3743-3759
-
-
Fozo, E.M.1
Makarova, K.S.2
Shabalina, S.A.3
Yutin, N.4
Koonin, E.V.5
Storz, G.6
-
8
-
-
11144310172
-
The small RNA istR inhibits synthesis of an SOS-induced toxic peptide
-
DOI 10.1016/j.cub.2004.12.003, PII S096098220400942X
-
Vogel J, Argaman L, Wagner EG, Altuvia S. The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide. Curr Biol 2004; 14:2271-6; PMID:15620655; http://dx.doi.org/10.1016/j.cub.2004.12.003. (Pubitemid 40033365)
-
(2004)
Current Biology
, vol.14
, Issue.24
, pp. 2271-2276
-
-
Vogel, J.1
Argaman, L.2
Wagner, E.G.H.3
Altuvia, S.4
-
9
-
-
0033386645
-
Novel intergenic repeats of Escherichia coli K-12
-
DOI 10.1016/S0923-2508(99)00126-6
-
Rudd KE. Novel intergenic repeats of Escherichia coli K-12. Res Microbiol 1999; 150:653-64; PMID:10673004; http://dx.doi.org/10.1016/S0923-2508(99)00126- 6. (Pubitemid 30035886)
-
(1999)
Research in Microbiology
, vol.150
, Issue.9-10
, pp. 653-664
-
-
Rudd, K.E.1
-
10
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
DOI 10.1016/S0960-9822(01)00270-6
-
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, et al. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 2001; 11:941-50; PMID:11448770; http://dx.doi.org/10.1016/S0960- 9822(01)00270-6. (Pubitemid 32589185)
-
(2001)
Current Biology
, vol.11
, Issue.12
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.H.5
Margalit, H.6
Altuvia, S.7
-
11
-
-
0037387973
-
A survey of small RNA-encoding genes in Escherichia coli
-
DOI 10.1093/nar/gkg297
-
Hershberg R, Altuvia S, Margalit H. A survey of small RNA-encoding genes in Escherichia coli. Nucleic Acids Res 2003; 31:1813-20; PMID:12654996; http://dx.doi.org/10.1093/nar/gkg297. (Pubitemid 36432687)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.7
, pp. 1813-1820
-
-
Hershberg, R.1
Altuvia, S.2
Margalit, H.3
-
12
-
-
0035806973
-
Computational identification of noncoding RNAs in E. coli by comparative genomics
-
DOI 10.1016/S0960-9822(01)00401-8
-
Rivas E, Klein RJ, Jones TA, Eddy SR. Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr Biol 2001; 11:1369-73; PMID:11553332; http://dx.doi.org/10.1016/S0960-9822(01)00401-8. (Pubitemid 32835879)
-
(2001)
Current Biology
, vol.11
, Issue.17
, pp. 1369-1373
-
-
Rivas, E.1
Klein, R.J.2
Jones, T.A.3
Eddy, S.R.4
-
13
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
DOI 10.1101/gad.901001
-
Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 2001; 15:1637-51; PMID:11445539; http://dx.doi. org/10.1101/gad.901001. (Pubitemid 32702586)
-
(2001)
Genes and Development
, vol.15
, Issue.13
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
14
-
-
60149089144
-
Regulatory RNAs in bacteria
-
PMID:19239884
-
Waters LS, Storz G. Regulatory RNAs in bacteria. Cell 2009; 136:615-28; PMID:19239884; http://dx.doi. org/10.1016/j.cell.2009.01.043.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
15
-
-
14244257879
-
Detection of 5′- and 3′-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
-
DOI 10.1093/nar/gki256
-
Kawano M, Reynolds AA, Miranda-Rios J, Storz G. Detection of 5'-and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res 2005; 33:1040-50; PMID:15718303; http://dx.doi.org/10.1093/ nar/gki256. (Pubitemid 41430524)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.3
, pp. 1040-1050
-
-
Kawano, M.1
Reynolds, A.A.2
Miranda-Rios, J.3
Storz, G.4
-
16
-
-
77957221326
-
Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family
-
PMID:20453032
-
Han K, Kim KS, Bak G, Park H, Lee Y. Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family. Nucleic Acids Res 2010; 38:5851-66; PMID:20453032; http://dx.doi. org/10.1093/nar/gkq292.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5851-5866
-
-
Han, K.1
Kim, K.S.2
Bak, G.3
Park, H.4
Lee, Y.5
-
17
-
-
0034025902
-
U-turns and regulatory RNAs
-
DOI 10.1016/S1369-5274(00)00069-2
-
Franch T, Gerdes K. U-turns and regulatory RNAs. Curr Opin Microbiol 2000; 3:159-64; PMID:10744992; http://dx.doi.org/10.1016/S1369-5274(00)00069-2. (Pubitemid 30180067)
-
(2000)
Current Opinion in Microbiology
, vol.3
, Issue.2
, pp. 159-164
-
-
Franch, T.1
Gerdes, K.2
-
18
-
-
22644441730
-
The phage-shock-protein response
-
DOI 10.1111/j.1365-2958.2005.04694.x
-
Darwin AJ. The phage-shock-protein response. Mol Microbiol 2005; 57:621-8; PMID:16045608; http://dx.doi.org/10.1111/j.1365-2958.2005.04694.x. (Pubitemid 41025946)
-
(2005)
Molecular Microbiology
, vol.57
, Issue.3
, pp. 621-628
-
-
Darwin, A.J.1
-
19
-
-
34548704307
-
Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes
-
DOI 10.1111/j.1365-2958.2007.05893.x
-
Kobayashi R, Suzuki T, Yoshida M. Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes. Mol Microbiol 2007; 66:100-9; PMID:17725563; http://dx.doi.org/10. 1111/j.1365-2958.2007.05893.x. (Pubitemid 47414790)
-
(2007)
Molecular Microbiology
, vol.66
, Issue.1
, pp. 100-109
-
-
Kobayashi, R.1
Suzuki, T.2
Yoshida, M.3
-
20
-
-
83055178971
-
Just scratching the surface: An expanding view of the Cpx envelope stress response
-
PMID:22092948
-
Vogt SL, Raivio TL. Just scratching the surface: an expanding view of the Cpx envelope stress response. FEMS Microbiol Lett 2012; 326:2-11; PMID:22092948; http://dx.doi.org/10.1111/j.1574-6968.2011.02406.x.
-
(2012)
FEMS Microbiol Lett
, vol.326
, pp. 2-11
-
-
Vogt, S.L.1
Raivio, T.L.2
-
21
-
-
78650653948
-
Decoding toxicity: Deducing the sequence requirements of IbsC, a type i toxin in Escherichia coli
-
PMID:20980267
-
Mok W W, Patel NH, Li Y. Decoding toxicity: deducing the sequence requirements of IbsC, a type I toxin in Escherichia coli. J Biol Chem 2010; 285:41627-36; PMID:20980267; http://dx.doi.org/10.1074/jbc. M110.149179.
-
(2010)
J Biol Chem
, vol.285
, pp. 41627-41636
-
-
Mok, W.W.1
Patel, N.H.2
Li, Y.3
-
22
-
-
69949152647
-
Identification and characterization of a family of toxin-antitoxin systems related to the Enterococcus faecalis plasmid pAD1 par addiction module
-
PMID:19542006
-
Weaver KE, Reddy SG, Brinkman CL, Patel S, Bayles KW, Endres JL. Identification and characterization of a family of toxin-antitoxin systems related to the Enterococcus faecalis plasmid pAD1 par addiction module. Microbiology 2009; 155:2930-40; PMID:19542006; http://dx.doi.org/10.1099/mic.0. 030932-0.
-
(2009)
Microbiology
, vol.155
, pp. 2930-2940
-
-
Weaver, K.E.1
Reddy, S.G.2
Brinkman, C.L.3
Patel, S.4
Bayles, K.W.5
Endres, J.L.6
-
23
-
-
34247567492
-
An antisense RNA inhibits translation by competing with standby ribosomes
-
DOI 10.1016/j.molcel.2007.04.003, PII S1097276507002195
-
Darfeuille F, Unoson C, Vogel J, Wagner EG. An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell 2007; 26:381-92; PMID:17499044; http://dx.doi.org/10.1016/j.mol-cel.2007.04.003. (Pubitemid 46687099)
-
(2007)
Molecular Cell
, vol.26
, Issue.3
, pp. 381-392
-
-
Darfeuille, F.1
Unoson, C.2
Vogel, J.3
Wagner, E.G.H.4
-
24
-
-
39049140606
-
Dealing with stable structures at ribosome binding sites: Bacterial translation and ribosome standby
-
Unoson C, Wagner EG. Dealing with stable structures at ribosome binding sites: bacterial translation and ribosome standby. RNA Biol 2007; 4:113-7; PMID:18094628; http://dx.doi.org/10.4161/rna.4.3.5350. (Pubitemid 351237912)
-
(2007)
RNA Biology
, vol.4
, Issue.3
, pp. 113-117
-
-
Unoson, C.1
Wagner, E.G.H.2
-
25
-
-
0026571483
-
Mechanism of post-segregational killing by the hok/sok system of plasmid R1. Sok antisense RNA regulates hok gene expression indirectly through the overlapping mok gene
-
PMID:1370544
-
Thisted T, Gerdes K. Mechanism of post-segregational killing by the hok/sok system of plasmid R1. Sok antisense RNA regulates hok gene expression indirectly through the overlapping mok gene. J Mol Biol 1992; 223:41-54; PMID:1370544; http://dx.doi. org/10.1016/0022-2836(92)90714-U.
-
(1992)
J Mol Biol
, vol.223
, pp. 41-54
-
-
Thisted, T.1
Gerdes, K.2
-
26
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
PMID:20164839
-
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, Sittka A, et al. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 2010; 464:250-5; PMID:20164839; http://dx.doi.org/10.1038/nature08756.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
-
27
-
-
79955559191
-
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
-
PMID:21482770
-
Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, Konstantinidis K T. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc Natl Acad Sci USA 2011; 108:7200-5; PMID:21482770; http://dx.doi.org/10.1073/pnas.1015622108.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7200-7205
-
-
Luo, C.1
Walk, S.T.2
Gordon, D.M.3
Feldgarden, M.4
Tiedje, J.M.5
Konstantinidis, K.T.6
-
28
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003; 31:3406-15; PMID:12824337; http://dx.doi. org/10.1093/nar/gkg595. (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
|