MetaNetX.org: A website and repository for accessing, analysing and manipulating metabolic networks

Bioinformatics

Volumn 29, Issue 6, 2013, Pages 815-816

  Ganter, Mathias ^a   Bernard, Thomas ^b   Moretti, Sebastien ^b,c   Stelling, ^a   Pagni, Marco ^b  

^a ETH ZURICH   (Switzerland)

^b SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^c UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; COMPUTER PROGRAM; GENETICS; GENOMICS; HUMAN; INTERNET; METABOLISM;

GENOMICS; HUMANS; INTERNET; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; SOFTWARE;

EID: 84875144546     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt036     Document Type: Article

References (13)

1. Becker,S.A. et al. (2007) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat. Protoc., 2, 727-738.
2. Bernard,T. et al. (2012) Reconciliation of metabolites and biochemical reactions for metabolic networks. Brief. Bioinform. [Epub ahead of print, doi:10.1093/bib/bbs058, November 19, 2012].
3. Boele,J. et al. (2012) FAME, the flux analysis and modeling environment. BMC Syst. Biol., 6, 8.
4. DeJongh,M. et al. (2012) CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the model SEED. Bioinformatics, 28, 891-892.
5. Gianchandani,E.P. et al. (2010) The application of flux balance analysis in systems biology. Wiley Interdiscip. Rev. Syst. Biol. Med., 2, 372-382.
6. Henry,C.S. et al. (2010) High-throughput generation, optimization and analysis of genome-scale metabolic models. Nat. Biotechnol., 28, 977-982.
7. Herrgaard,M.J. et al. (2008) A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat. Biotechnol., 26, 1155-1160.
8. Kanehisa,M. et al. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
9. Karr,J.R. et al. (2012) A whole-cell computational model predicts phenotype from genotype. Cell, 150, 389-401.
10. Kumar,A. et al. (2012) MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases. BMC Bioinformatics, 13, 6.
11. Rocha,I. et al. (2010) OptFlux: an open-source software platform for in silico metabolic engineering. BMC Syst. Biol., 4, 45.
12. Schellenberger,J. et al. (2010) BiGG: a biochemical genetic and genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinformatics, 11, 213.
13. Terzer,M. et al. (2009) Genome-scale metabolic networks. Wiley Interdiscip. Rev. Syst. Biol. Med., 1, 285-297.