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Volumn 40, Issue 4, 2013, Pages 759-768

Identifying compartments in presence-absence matrices and bipartite networks: Insights into modularity measures

Author keywords

Biogeography; Compartmentalization; Modularity; Nestedness; Network theory; Networks; Power analysis; Presence absence matrices

Indexed keywords

BIOGEOGRAPHY; COMPARTMENTALIZATION; DATA SET; ENVIRONMENTAL GRADIENT; IDENTIFICATION METHOD; INDEX METHOD; MATRIX; MEASUREMENT METHOD; NESTEDNESS;

EID: 84875072094     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/jbi.12015     Document Type: Article
Times cited : (81)

References (39)
  • 1
    • 53149083373 scopus 로고    scopus 로고
    • Species diversity and distribution in presence-absence matrices: mathematical relationships and biological implications
    • Arita, H.T., Christen, J.A., Rodríguez, P. & Soberón, J. (2008) Species diversity and distribution in presence-absence matrices: mathematical relationships and biological implications. The American Naturalist, 172, 519-532.
    • (2008) The American Naturalist , vol.172 , pp. 519-532
    • Arita, H.T.1    Christen, J.A.2    Rodríguez, P.3    Soberón, J.4
  • 2
    • 0027331799 scopus 로고
    • The measure of order and disorder in the distribution of species in fragmented habitat
    • Atmar, W. & Patterson, B.D. (1993) The measure of order and disorder in the distribution of species in fragmented habitat. Oecologia, 96, 373-382.
    • (1993) Oecologia , vol.96 , pp. 373-382
    • Atmar, W.1    Patterson, B.D.2
  • 3
    • 37049032887 scopus 로고    scopus 로고
    • Modularity and community detection in bipartite networks
    • Barber, M.J. (2007) Modularity and community detection in bipartite networks. Physical Review E, 76, 066102.
    • (2007) Physical Review E , vol.76 , pp. 066102
    • Barber, M.J.1
  • 5
    • 67650935809 scopus 로고    scopus 로고
    • Wallacea and its nectarivorous birds: nestedness and modules
    • Carstensen, D.W. & Olesen, J.M. (2009) Wallacea and its nectarivorous birds: nestedness and modules. Journal of Biogeography, 36, 1540-1550.
    • (2009) Journal of Biogeography , vol.36 , pp. 1540-1550
    • Carstensen, D.W.1    Olesen, J.M.2
  • 8
    • 59449090368 scopus 로고    scopus 로고
    • Ecological modules and roles of species in heathland plant-insect flower visitor networks
    • Dupont, Y.L. & Olesen, J.M. (2009) Ecological modules and roles of species in heathland plant-insect flower visitor networks. Journal of Animal Ecology, 78, 346-353.
    • (2009) Journal of Animal Ecology , vol.78 , pp. 346-353
    • Dupont, Y.L.1    Olesen, J.M.2
  • 11
    • 0029667986 scopus 로고    scopus 로고
    • Species-range-size distributions: patterns, mechanisms and implications
    • Gaston, K.J. (1996) Species-range-size distributions: patterns, mechanisms and implications. Trends in Ecology and Evolution, 11, 197-201.
    • (1996) Trends in Ecology and Evolution , vol.11 , pp. 197-201
    • Gaston, K.J.1
  • 12
    • 0001921913 scopus 로고
    • The individualistic concept of the plant association
    • Gleason, H.A. (1926) The individualistic concept of the plant association. Bulletin of the Torrey Botanical Club, 53, 7-26.
    • (1926) Bulletin of the Torrey Botanical Club , vol.53 , pp. 7-26
    • Gleason, H.A.1
  • 13
    • 0024225755 scopus 로고
    • On the distribution of Greater Antillean bats
    • Griffiths, T.A. & Klingener, D. (1988) On the distribution of Greater Antillean bats. Biotropica, 20, 240-251.
    • (1988) Biotropica , vol.20 , pp. 240-251
    • Griffiths, T.A.1    Klingener, D.2
  • 14
    • 14644396645 scopus 로고    scopus 로고
    • Functional cartography of complex metabolic networks
    • Guimerà, R. & Amaral, L.A.N. (2005) Functional cartography of complex metabolic networks. Nature, 433, 895-900.
    • (2005) Nature , vol.433 , pp. 895-900
    • Guimerà, R.1    Amaral, L.A.N.2
  • 15
    • 34548821644 scopus 로고    scopus 로고
    • Module identification in bipartite and directed networks
    • Guimerà, R., Sales-Pardo, M. & Amaral, L.A.N. (2007) Module identification in bipartite and directed networks. Physical Review E, 76, 036102.
    • (2007) Physical Review E , vol.76 , pp. 036102
    • Guimerà, R.1    Sales-Pardo, M.2    Amaral, L.A.N.3
  • 17
    • 34247355591 scopus 로고    scopus 로고
    • Null model tests of clustering of species, negative co-occurrence patterns and nestedness in meta-communities
    • Hausdorf, B. & Hennig, C. (2007) Null model tests of clustering of species, negative co-occurrence patterns and nestedness in meta-communities. Oikos, 116, 818-828.
    • (2007) Oikos , vol.116 , pp. 818-828
    • Hausdorf, B.1    Hennig, C.2
  • 18
    • 0030620568 scopus 로고    scopus 로고
    • Gradient models, gradient analysis, and hierarchical structure in plant communities
    • Hoagland, B.W. & Collins, S.L. (1997) Gradient models, gradient analysis, and hierarchical structure in plant communities. Oikos, 78, 23-30.
    • (1997) Oikos , vol.78 , pp. 23-30
    • Hoagland, B.W.1    Collins, S.L.2
  • 19
    • 0036313028 scopus 로고    scopus 로고
    • Coherence, species turnover, and boundary clumping: elements of meta-community structure
    • Leibold, M.A. & Mikkelson, G.M. (2002) Coherence, species turnover, and boundary clumping: elements of meta-community structure. Oikos, 97, 237-250.
    • (2002) Oikos , vol.97 , pp. 237-250
    • Leibold, M.A.1    Mikkelson, G.M.2
  • 21
    • 1342268887 scopus 로고    scopus 로고
    • Randomization of presence-absence matrices: comments and new algorithms
    • Miklós, I. & Podani, J. (2004) Randomization of presence-absence matrices: comments and new algorithms. Ecology, 85, 86-92.
    • (2004) Ecology , vol.85 , pp. 86-92
    • Miklós, I.1    Podani, J.2
  • 22
    • 30644477608 scopus 로고    scopus 로고
    • Rearrangement of ecological data matrices via Markov chain Monte Carlo simulation
    • Miklós, I., Somodi, I. & Podani, J. (2005) Rearrangement of ecological data matrices via Markov chain Monte Carlo simulation. Ecology, 86, 3398-3410.
    • (2005) Ecology , vol.86 , pp. 3398-3410
    • Miklós, I.1    Somodi, I.2    Podani, J.3
  • 23
    • 33746327503 scopus 로고    scopus 로고
    • Ecological networks and their fragility
    • Montoya, J.M., Pimm, S.L. & Solé, R.V. (2006) Ecological networks and their fragility. Nature, 442, 259-264.
    • (2006) Nature , vol.442 , pp. 259-264
    • Montoya, J.M.1    Pimm, S.L.2    Solé, R.V.3
  • 25
    • 37649028224 scopus 로고    scopus 로고
    • Finding and evaluating community structure in networks
    • Newman, M.E.J. & Girvan, M. (2004) Finding and evaluating community structure in networks. Physical Review E, 69, 026113.
    • (2004) Physical Review E , vol.69 , pp. 026113
    • Newman, M.E.J.1    Girvan, M.2
  • 27
    • 0000502140 scopus 로고
    • Are food webs divided into compartments?
    • Pimm, S.L. & Lawton, J.H. (1980) Are food webs divided into compartments? Journal of Animal Ecology, 49, 879-898.
    • (1980) Journal of Animal Ecology , vol.49 , pp. 879-898
    • Pimm, S.L.1    Lawton, J.H.2
  • 28
    • 76249133156 scopus 로고    scopus 로고
    • Bat metacommunity structure on Caribbean islands and the role of endemics
    • Presley, S.J. & Willig, M.R. (2010) Bat metacommunity structure on Caribbean islands and the role of endemics. Global Ecology and Biogeography, 19, 185-199.
    • (2010) Global Ecology and Biogeography , vol.19 , pp. 185-199
    • Presley, S.J.1    Willig, M.R.2
  • 29
    • 77953595563 scopus 로고    scopus 로고
    • A comprehensive framework for the evaluation of metacommunity structure
    • Presley, S.J., Higgins, C.L. & Willig, M.R. (2010) A comprehensive framework for the evaluation of metacommunity structure. Oikos, 119, 908-917.
    • (2010) Oikos , vol.119 , pp. 908-917
    • Presley, S.J.1    Higgins, C.L.2    Willig, M.R.3
  • 30
    • 17644381000 scopus 로고    scopus 로고
    • The world's biogeographical regions: cluster analyses based on bat distributions
    • Procheş, Ş. (2005) The world's biogeographical regions: cluster analyses based on bat distributions. Journal of Biogeography, 32, 607-614.
    • (2005) Journal of Biogeography , vol.32 , pp. 607-614
    • Procheş, Ş.1
  • 31
    • 0027100922 scopus 로고
    • Compartments and predation in an estuarine food web
    • Raffaelli, D. & Hall, S.J. (1992) Compartments and predation in an estuarine food web. Journal of Animal Ecology, 61, 551-560.
    • (1992) Journal of Animal Ecology , vol.61 , pp. 551-560
    • Raffaelli, D.1    Hall, S.J.2
  • 32
    • 67649983142 scopus 로고    scopus 로고
    • Compartments in a marine food web associated with phylogeny, body mass, and habitat structure
    • Rezende, E.L., Albert, E.M., Fortuna, M.A. & Bascompte, J. (2009) Compartments in a marine food web associated with phylogeny, body mass, and habitat structure. Ecology Letters, 12, 779-788.
    • (2009) Ecology Letters , vol.12 , pp. 779-788
    • Rezende, E.L.1    Albert, E.M.2    Fortuna, M.A.3    Bascompte, J.4
  • 33
    • 0035055382 scopus 로고    scopus 로고
    • Effect of land disturbance and stress on species traits of ground beetle assemblages
    • Ribera, I., Dolédec, S., Downie, I.S. & Foster, G.N. (2001) Effect of land disturbance and stress on species traits of ground beetle assemblages. Ecology, 82, 1112-1129.
    • (2001) Ecology , vol.82 , pp. 1112-1129
    • Ribera, I.1    Dolédec, S.2    Downie, I.S.3    Foster, G.N.4
  • 34
    • 56649089789 scopus 로고    scopus 로고
    • Disintegration of the ecological community
    • Ricklefs, R.E. (2008) Disintegration of the ecological community. The American Naturalist, 172, 741-750.
    • (2008) The American Naturalist , vol.172 , pp. 741-750
    • Ricklefs, R.E.1
  • 35
    • 0025622072 scopus 로고
    • The checkerboard score and species distributions
    • Stone, L. & Roberts, A. (1990) The checkerboard score and species distributions. Oecologia, 85, 74-79.
    • (1990) Oecologia , vol.85 , pp. 74-79
    • Stone, L.1    Roberts, A.2
  • 37
    • 77955625829 scopus 로고    scopus 로고
    • Stability of ecological communities and the architecture of mutualistic and trophic networks
    • Thébault, E. & Fontaine, C. (2010) Stability of ecological communities and the architecture of mutualistic and trophic networks. Science, 329, 853-856.
    • (2010) Science , vol.329 , pp. 853-856
    • Thébault, E.1    Fontaine, C.2
  • 38
    • 58149122738 scopus 로고    scopus 로고
    • A consumer's guide to nestedness analysis
    • Ulrich, W., Almeida-Neto, M. & Gotelli, N.J. (2009) A consumer's guide to nestedness analysis. Oikos, 118, 3-17.
    • (2009) Oikos , vol.118 , pp. 3-17
    • Ulrich, W.1    Almeida-Neto, M.2    Gotelli, N.J.3
  • 39
    • 45849107285 scopus 로고    scopus 로고
    • Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history
    • Vacher, C., Piou, D. & Desprez-Loustau, M.-L. (2008) Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history. PLoS ONE, 3, e1740.
    • (2008) PLoS ONE , vol.3
    • Vacher, C.1    Piou, D.2    Desprez-Loustau, M.-L.3


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