-
1
-
-
84858070612
-
Synthetic biosystems for the production of high-value plant metabolites
-
Facchini P.J., Bohlmann J., Covello P.S., De Luca V., Mahadevan R., Page J.E., Ro D.K., Sensen C.W., Storms R., Martin V.J. Synthetic biosystems for the production of high-value plant metabolites. Trends Biotechnol 2012, 30:127-131.
-
(2012)
Trends Biotechnol
, vol.30
, pp. 127-131
-
-
Facchini, P.J.1
Bohlmann, J.2
Covello, P.S.3
De Luca, V.4
Mahadevan, R.5
Page, J.E.6
Ro, D.K.7
Sensen, C.W.8
Storms, R.9
Martin, V.J.10
-
2
-
-
67650436176
-
Drug discovery and natural products: end of an era or an endless frontier?
-
Li J.W., Vederas J.C. Drug discovery and natural products: end of an era or an endless frontier?. Science 2009, 325:161-165.
-
(2009)
Science
, vol.325
, pp. 161-165
-
-
Li, J.W.1
Vederas, J.C.2
-
3
-
-
34247109045
-
Natural products as sources of new drugs over the last 25 years
-
Newman D.J., Cragg G.M. Natural products as sources of new drugs over the last 25 years. J Nat Prod 2007, 70:461-477.
-
(2007)
J Nat Prod
, vol.70
, pp. 461-477
-
-
Newman, D.J.1
Cragg, G.M.2
-
4
-
-
57649100762
-
Metabolic engineering for plant natural product biosynthesis in microbes
-
Chemler J., Koffas M. Metabolic engineering for plant natural product biosynthesis in microbes. Curr Opin Biotechnol 2008, 597-605.
-
(2008)
Curr Opin Biotechnol
, pp. 597-605
-
-
Chemler, J.1
Koffas, M.2
-
5
-
-
80555149222
-
Efficient free fatty acid production in Escherichia coli using plant acyl-ACP thioesterases
-
Zhang X., Li M., Agrawal A., San K.Y. Efficient free fatty acid production in Escherichia coli using plant acyl-ACP thioesterases. Metab Eng 2011, 13:713-722.
-
(2011)
Metab Eng
, vol.13
, pp. 713-722
-
-
Zhang, X.1
Li, M.2
Agrawal, A.3
San, K.Y.4
-
6
-
-
77956371200
-
Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control
-
Leonard E., Ajikumar P., Thayer K., Xiao W., Mo J., Tidor B., Stephanopoulos G., Prather K. Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control. Proc Natl Acad Sci U S A 2010, 13654-13659.
-
(2010)
Proc Natl Acad Sci U S A
, pp. 13654-13659
-
-
Leonard, E.1
Ajikumar, P.2
Thayer, K.3
Xiao, W.4
Mo, J.5
Tidor, B.6
Stephanopoulos, G.7
Prather, K.8
-
7
-
-
84856389651
-
Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin
-
Westfall P.J., Pitera D.J., Lenihan J.R., Eng D., Woolard F.X., Regentin R., Horning T., Tsuruta H., Melis D.J., Owens A., et al. Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin. Proc Natl Acad Sci U S A 2012, 109:E111-E118.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
-
-
Westfall, P.J.1
Pitera, D.J.2
Lenihan, J.R.3
Eng, D.4
Woolard, F.X.5
Regentin, R.6
Horning, T.7
Tsuruta, H.8
Melis, D.J.9
Owens, A.10
-
8
-
-
77957329119
-
Isoprenoid pathway optimization for taxol precursor overproduction in Escherichia coli
-
Ajikumar P.K., Xiao W.-H., Tyo K.E.J., Wang Y., Simeon F., Leonard E., Mucha O., Phon T.H., Pfeifer B., Stephanopoulos G. Isoprenoid pathway optimization for taxol precursor overproduction in Escherichia coli. Science 2010, 330:70-74.
-
(2010)
Science
, vol.330
, pp. 70-74
-
-
Ajikumar, P.K.1
Xiao, W.-H.2
Tyo, K.E.J.3
Wang, Y.4
Simeon, F.5
Leonard, E.6
Mucha, O.7
Phon, T.H.8
Pfeifer, B.9
Stephanopoulos, G.10
-
9
-
-
79958224739
-
High-yield resveratrol production in engineered Escherichia coli
-
Lim C., Fowler Z., Hueller T., Schaffer S., Koffas M. High-yield resveratrol production in engineered Escherichia coli. Appl Environ Microbiol 2011, 3451-3460.
-
(2011)
Appl Environ Microbiol
, pp. 3451-3460
-
-
Lim, C.1
Fowler, Z.2
Hueller, T.3
Schaffer, S.4
Koffas, M.5
-
10
-
-
80052021573
-
Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA
-
Xu P., Ranganathan S., Fowler Z., Maranas C., Koffas M. Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA. Metab Eng 2011, 13:578-587.
-
(2011)
Metab Eng
, vol.13
, pp. 578-587
-
-
Xu, P.1
Ranganathan, S.2
Fowler, Z.3
Maranas, C.4
Koffas, M.5
-
11
-
-
79954618309
-
Multi-factorial engineering of heterologous polyketide production in Escherichia coli reveals complex pathway interactions
-
Boghigian B.A., Zhang H., Pfeifer B.A. Multi-factorial engineering of heterologous polyketide production in Escherichia coli reveals complex pathway interactions. Biotechnol Bioeng 2011, 108:1360-1371.
-
(2011)
Biotechnol Bioeng
, vol.108
, pp. 1360-1371
-
-
Boghigian, B.A.1
Zhang, H.2
Pfeifer, B.A.3
-
12
-
-
79957546214
-
A bacterial platform for fermentative production of plant alkaloids
-
Nakagawa A., Minami H., Kim J.S., Koyanagi T., Katayama T., Sato F., Kumagai H. A bacterial platform for fermentative production of plant alkaloids. Nat Commun 2011, 2:326.
-
(2011)
Nat Commun
, vol.2
, pp. 326
-
-
Nakagawa, A.1
Minami, H.2
Kim, J.S.3
Koyanagi, T.4
Katayama, T.5
Sato, F.6
Kumagai, H.7
-
13
-
-
79953198515
-
Metabolic engineering of Escherichia coli for biofuel production
-
Xu P., Koffas M.A.G. Metabolic engineering of Escherichia coli for biofuel production. Biofuels 2010, 1:493-504.
-
(2010)
Biofuels
, vol.1
, pp. 493-504
-
-
Xu, P.1
Koffas, M.A.G.2
-
14
-
-
84861440312
-
Systems metabolic engineering of microorganisms for natural and non-natural chemicals
-
Lee J.W., Na D., Park J.M., Lee J., Choi S., Lee S.Y. Systems metabolic engineering of microorganisms for natural and non-natural chemicals. Nat Chem Biol 2012, 8:536-546.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 536-546
-
-
Lee, J.W.1
Na, D.2
Park, J.M.3
Lee, J.4
Choi, S.5
Lee, S.Y.6
-
15
-
-
79960964285
-
Regulation and control of metabolic fluxes in microbes
-
Gerosa L., Sauer U. Regulation and control of metabolic fluxes in microbes. Curr Opin Biotechnol 2011, 22:566-575.
-
(2011)
Curr Opin Biotechnol
, vol.22
, pp. 566-575
-
-
Gerosa, L.1
Sauer, U.2
-
16
-
-
79952645848
-
Informing biological design by integration of systems and synthetic biology
-
Smolke C.D., Silver P.A. Informing biological design by integration of systems and synthetic biology. Cell 2011, 144:855-859.
-
(2011)
Cell
, vol.144
, pp. 855-859
-
-
Smolke, C.D.1
Silver, P.A.2
-
17
-
-
79961008636
-
Natural products from synthetic biology
-
Mitchell W. Natural products from synthetic biology. Curr Opin Chem Biol 2011, 15:505-515.
-
(2011)
Curr Opin Chem Biol
, vol.15
, pp. 505-515
-
-
Mitchell, W.1
-
18
-
-
42949136443
-
Genome mining for novel natural product discovery
-
Challis G.L. Genome mining for novel natural product discovery. J Med Chem 2008, 51:2618-2628.
-
(2008)
J Med Chem
, vol.51
, pp. 2618-2628
-
-
Challis, G.L.1
-
19
-
-
33947308882
-
Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans
-
Bergmann S., Schümann J., Scherlach K., Lange C., Brakhage A.A., Hertweck C. Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans. Nat Chem Biol 2007, 3:213-217.
-
(2007)
Nat Chem Biol
, vol.3
, pp. 213-217
-
-
Bergmann, S.1
Schümann, J.2
Scherlach, K.3
Lange, C.4
Brakhage, A.A.5
Hertweck, C.6
-
20
-
-
84877986528
-
Functional characterization of amyrin synthase involved in ursolic acid biosynthesis in Catharanthus roseus leaf epidermis
-
Yu F., Thamm A.M., Reed D., Villa-Ruano N., Quesada A.L., Gloria E.L., Covello P., De Luca V. Functional characterization of amyrin synthase involved in ursolic acid biosynthesis in Catharanthus roseus leaf epidermis. Phytochemistry 2012, 10.1016/j.phytochem.2012.05.002.
-
(2012)
Phytochemistry
-
-
Yu, F.1
Thamm, A.M.2
Reed, D.3
Villa-Ruano, N.4
Quesada, A.L.5
Gloria, E.L.6
Covello, P.7
De Luca, V.8
-
21
-
-
84863299258
-
Genome sequence of the model medicinal mushroom Ganoderma lucidum
-
Chen S., Xu J., Liu C., Zhu Y., Nelson D.R., Zhou S., Li C., Wang L., Guo X., Sun Y., et al. Genome sequence of the model medicinal mushroom Ganoderma lucidum. Nat Commun 2012, 3:913.
-
(2012)
Nat Commun
, vol.3
, pp. 913
-
-
Chen, S.1
Xu, J.2
Liu, C.3
Zhu, Y.4
Nelson, D.R.5
Zhou, S.6
Li, C.7
Wang, L.8
Guo, X.9
Sun, Y.10
-
22
-
-
83255188963
-
De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes
-
Barrero R., Chapman B., Yang Y., Moolhuijzen P., Keeble-Gagnere G., Zhang N., Tang Q., Bellgard M., Qiu D. De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes. BMC Genomics 2011, 12:600.
-
(2011)
BMC Genomics
, vol.12
, pp. 600
-
-
Barrero, R.1
Chapman, B.2
Yang, Y.3
Moolhuijzen, P.4
Keeble-Gagnere, G.5
Zhang, N.6
Tang, Q.7
Bellgard, M.8
Qiu, D.9
-
23
-
-
84859063337
-
De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments
-
Gahlan P., Singh H., Shankar R., Sharma N., Kumari A., Chawla V., Ahuja P., Kumar S. De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments. BMC Genomics 2012, 13:126.
-
(2012)
BMC Genomics
, vol.13
, pp. 126
-
-
Gahlan, P.1
Singh, H.2
Shankar, R.3
Sharma, N.4
Kumari, A.5
Chawla, V.6
Ahuja, P.7
Kumar, S.8
-
24
-
-
84864449063
-
De Novo sequencing of Hypericum perforatum transcriptome to identify potential genes involved in the biosynthesis of active metabolites
-
He M., Wang Y., Hua W., Zhang Y., Wang Z. De Novo sequencing of Hypericum perforatum transcriptome to identify potential genes involved in the biosynthesis of active metabolites. PLoS ONE 2012, 7:e42081.
-
(2012)
PLoS ONE
, vol.7
-
-
He, M.1
Wang, Y.2
Hua, W.3
Zhang, Y.4
Wang, Z.5
-
25
-
-
79952108014
-
Targeted proteomics for metabolic pathway optimization: application to terpene production
-
Redding-Johanson A.M., Batth T.S., Chan R., Krupa R., Szmidt H.L., Adams P.D., Keasling J.D., Lee T.S., Mukhopadhyay A., Petzold C.J. Targeted proteomics for metabolic pathway optimization: application to terpene production. Metab Eng 2011, 13:194-203.
-
(2011)
Metab Eng
, vol.13
, pp. 194-203
-
-
Redding-Johanson, A.M.1
Batth, T.S.2
Chan, R.3
Krupa, R.4
Szmidt, H.L.5
Adams, P.D.6
Keasling, J.D.7
Lee, T.S.8
Mukhopadhyay, A.9
Petzold, C.J.10
-
26
-
-
84855694523
-
Modular engineering of l-tyrosine production in Escherichia coli
-
Juminaga D., Baidoo E.E., Redding-Johanson A.M., Batth T.S., Burd H., Mukhopadhyay A., Petzold C.J., Keasling J.D. Modular engineering of l-tyrosine production in Escherichia coli. Appl Environ Microbiol 2012, 78:89-98.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 89-98
-
-
Juminaga, D.1
Baidoo, E.E.2
Redding-Johanson, A.M.3
Batth, T.S.4
Burd, H.5
Mukhopadhyay, A.6
Petzold, C.J.7
Keasling, J.D.8
-
27
-
-
77951552860
-
OptORF: optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains
-
Kim J., Reed J.L. OptORF: optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains. BMC Syst Biol 2010, 4:53.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 53
-
-
Kim, J.1
Reed, J.L.2
-
28
-
-
77949495880
-
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
-
Tepper N., Shlomi T. Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways. Bioinformatics 2009, 26:536-543.
-
(2009)
Bioinformatics
, vol.26
, pp. 536-543
-
-
Tepper, N.1
Shlomi, T.2
-
29
-
-
67650660144
-
Increasing malonyl-CoA biosynthesis by tuning the Escherichia coli metabolic network and its application to flavanone production
-
Fowler Z.L., Gikandi W.W., Koffas M.A. Increasing malonyl-CoA biosynthesis by tuning the Escherichia coli metabolic network and its application to flavanone production. Appl Environ Microbiol 2009, 75:5831-5839.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5831-5839
-
-
Fowler, Z.L.1
Gikandi, W.W.2
Koffas, M.A.3
-
30
-
-
76749151341
-
Improving NADPH availability for natural product biosynthesis in Escherichia coli by metabolic engineering
-
Chemler J., Fowler Z., McHugh K., Koffas M. Improving NADPH availability for natural product biosynthesis in Escherichia coli by metabolic engineering. Metab Eng 2010, 96-104.
-
(2010)
Metab Eng
, pp. 96-104
-
-
Chemler, J.1
Fowler, Z.2
McHugh, K.3
Koffas, M.4
-
31
-
-
80053175304
-
TIGER: toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks
-
Jensen P.A., Lutz K.A., Papin J.A. TIGER: toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks. BMC Syst Biol 2011, 5:147.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 147
-
-
Jensen, P.A.1
Lutz, K.A.2
Papin, J.A.3
-
32
-
-
78650541419
-
Von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models
-
Fleming R.M., Thiele I. von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models. Bioinformatics 2011, 27:142-143.
-
(2011)
Bioinformatics
, vol.27
, pp. 142-143
-
-
Fleming, R.M.1
Thiele, I.2
-
33
-
-
77954701087
-
Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum
-
Gowen C.M., Fong S.S. Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum. Biotechnol J 2010, 5:759-767.
-
(2010)
Biotechnol J
, vol.5
, pp. 759-767
-
-
Gowen, C.M.1
Fong, S.S.2
-
34
-
-
77954590959
-
OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions
-
Ranganathan S., Suthers P.F., Maranas C.D. OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions. PLoS Comput Biol 2010, 6:e1000744.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Ranganathan, S.1
Suthers, P.F.2
Maranas, C.D.3
-
35
-
-
42949164125
-
Formulating genome-scale kinetic models in the post-genome era
-
Jamshidi N., Palsson B.O. Formulating genome-scale kinetic models in the post-genome era. Mol Syst Biol 2008, 4.
-
(2008)
Mol Syst Biol
, pp. 4
-
-
Jamshidi, N.1
Palsson, B.O.2
-
36
-
-
84864258391
-
Synthetic biology: an emerging engineering discipline
-
Cheng A.A., Lu T.K. Synthetic biology: an emerging engineering discipline. Annu Rev Biomed Eng 2012, 14:155-178.
-
(2012)
Annu Rev Biomed Eng
, vol.14
, pp. 155-178
-
-
Cheng, A.A.1
Lu, T.K.2
-
37
-
-
79951501719
-
DNA assembly for synthetic biology: from parts to pathways and beyond
-
Ellis T., Adie T., Baldwin G.S. DNA assembly for synthetic biology: from parts to pathways and beyond. Integr Biol (Camb) 2011, 3:109-118.
-
(2011)
Integr Biol (Camb)
, vol.3
, pp. 109-118
-
-
Ellis, T.1
Adie, T.2
Baldwin, G.S.3
-
38
-
-
33847608289
-
Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
-
Li M.Z., Elledge S.J. Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat Methods 2007, 4:251-256.
-
(2007)
Nat Methods
, vol.4
, pp. 251-256
-
-
Li, M.Z.1
Elledge, S.J.2
-
39
-
-
84866171028
-
One-step sequence- and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies
-
Jeong J.-Y., Yim H.-S., Ryu J.-Y., Lee H.S., Lee J.-H., Seen D.-S., Kang S.G. One-step sequence- and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies. Appl Environ Microbiol 2012, 78:5440-5443.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 5440-5443
-
-
Jeong, J.-Y.1
Yim, H.-S.2
Ryu, J.-Y.3
Lee, H.S.4
Lee, J.-H.5
Seen, D.-S.6
Kang, S.G.7
-
40
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson D.G., Young L., Chuang R.Y., Venter J.C., Hutchison C.A., Smith H.O. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 2009, 6:343-345.
-
(2009)
Nat Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
41
-
-
84863187717
-
Rapid hierarchical assembly of medium-size DNA cassettes
-
Schmid-Burgk J.L., Xie Z., Frank S., Virreira Winter S., Mitschka S., Kolanus W., Murray A., Benenson Y. Rapid hierarchical assembly of medium-size DNA cassettes. Nucleic Acids Res 2012, 40:e92.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Schmid-Burgk, J.L.1
Xie, Z.2
Frank, S.3
Virreira Winter, S.4
Mitschka, S.5
Kolanus, W.6
Murray, A.7
Benenson, Y.8
-
42
-
-
84868256903
-
Cloning large gene clusters from E. coli using in vitro single-strand overlapping annealing
-
Wang R.-Y., Shi Z.-Y., Chen J.-C., Chen G.-Q. Cloning large gene clusters from E. coli using in vitro single-strand overlapping annealing. ACS Synth Biol 2012, 1:291-295.
-
(2012)
ACS Synth Biol
, vol.1
, pp. 291-295
-
-
Wang, R.-Y.1
Shi, Z.-Y.2
Chen, J.-C.3
Chen, G.-Q.4
-
43
-
-
59649108349
-
DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
-
Shao Z., Zhao H. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res 2009, 37:e16.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Shao, Z.1
Zhao, H.2
-
44
-
-
80053064386
-
Reiterative recombination for the in vivo assembly of libraries of multigene pathways
-
Wingler L.M., Cornish V.W. Reiterative recombination for the in vivo assembly of libraries of multigene pathways. Proc Natl Acad Sci U S A 2011, 108:15135-15140.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15135-15140
-
-
Wingler, L.M.1
Cornish, V.W.2
-
45
-
-
77953584054
-
Creation of a bacterial cell controlled by a chemically synthesized genome
-
Gibson D.G., Glass J.I., Lartigue C., Noskov V.N., Chuang R.-Y., Algire M.A., Benders G.A., Montague M.G., Ma L., Moodie M.M., et al. Creation of a bacterial cell controlled by a chemically synthesized genome. Science 2010, 329:52-56.
-
(2010)
Science
, vol.329
, pp. 52-56
-
-
Gibson, D.G.1
Glass, J.I.2
Lartigue, C.3
Noskov, V.N.4
Chuang, R.-Y.5
Algire, M.A.6
Benders, G.A.7
Montague, M.G.8
Ma, L.9
Moodie, M.M.10
-
46
-
-
84868238000
-
Assembly of large, high G+C bacterial DNA fragments in yeast
-
Noskov V.N., Karas B.J., Young L., Chuang R.-Y., Gibson D.G., Lin Y.-C., Stam J., Yonemoto I.T., Suzuki Y., Andrews-Pfannkoch C., et al. Assembly of large, high G+C bacterial DNA fragments in yeast. ACS Synth Biol 2012, 1:267-273.
-
(2012)
ACS Synth Biol
, vol.1
, pp. 267-273
-
-
Noskov, V.N.1
Karas, B.J.2
Young, L.3
Chuang, R.-Y.4
Gibson, D.G.5
Lin, Y.-C.6
Stam, J.7
Yonemoto, I.T.8
Suzuki, Y.9
Andrews-Pfannkoch, C.10
-
47
-
-
79551667941
-
Circular polymerase extension cloning for high-throughput cloning of complex and combinatorial DNA libraries
-
Quan J., Tian J. Circular polymerase extension cloning for high-throughput cloning of complex and combinatorial DNA libraries. Nat Protocols 2011, 6:242-251.
-
(2011)
Nat Protocols
, vol.6
, pp. 242-251
-
-
Quan, J.1
Tian, J.2
-
49
-
-
84868263016
-
EPathBrick: a synthetic biology platform for engineering metabolic pathways in E. coli
-
Xu P., Vansiri A., Bhan N., Koffas M.A.G. ePathBrick: a synthetic biology platform for engineering metabolic pathways in E. coli. ACS Synth Biol 2012, 1:256-266.
-
(2012)
ACS Synth Biol
, vol.1
, pp. 256-266
-
-
Xu, P.1
Vansiri, A.2
Bhan, N.3
Koffas, M.A.G.4
-
50
-
-
82455208881
-
Optimized compatible set of BioBrick™ vectors for metabolic pathway engineering
-
Vick J.E., Johnson E.T., Choudhary S., Bloch S.E., Lopez-Gallego F., Srivastava P., Tikh I.B., Wawrzyn G.T., Schmidt-Dannert C. Optimized compatible set of BioBrick™ vectors for metabolic pathway engineering. Appl Microbiol Biotechnol 2011, 92:1275-1286.
-
(2011)
Appl Microbiol Biotechnol
, vol.92
, pp. 1275-1286
-
-
Vick, J.E.1
Johnson, E.T.2
Choudhary, S.3
Bloch, S.E.4
Lopez-Gallego, F.5
Srivastava, P.6
Tikh, I.B.7
Wawrzyn, G.T.8
Schmidt-Dannert, C.9
-
51
-
-
84857440093
-
Multigene expression in vivo: supremacy of large versus small terminators for T7 RNA polymerase
-
Du L., Villarreal S., Forster A.C. Multigene expression in vivo: supremacy of large versus small terminators for T7 RNA polymerase. Biotechnol Bioeng 2012, 109:1043-1050.
-
(2012)
Biotechnol Bioeng
, vol.109
, pp. 1043-1050
-
-
Du, L.1
Villarreal, S.2
Forster, A.C.3
-
52
-
-
78650276265
-
Introduction of customized inserts for s-treamlined assembly and optimization of BioBrick synthetic genetic circuits
-
Norville J.E., Derda R., Gupta S., Drinkwater K.A., Belcher A.M., Leschziner A.E., Knight T.F. Introduction of customized inserts for s-treamlined assembly and optimization of BioBrick synthetic genetic circuits. J Biol Eng 2010, 4:17.
-
(2010)
J Biol Eng
, vol.4
, pp. 17
-
-
Norville, J.E.1
Derda, R.2
Gupta, S.3
Drinkwater, K.A.4
Belcher, A.M.5
Leschziner, A.E.6
Knight, T.F.7
-
53
-
-
80053412686
-
Identification and microbial production of a terpene-based advanced biofuel
-
Peralta-Yahya P.P., Ouellet M., Chan R., Mukhopadhyay A., Keasling J.D., Lee T.S. Identification and microbial production of a terpene-based advanced biofuel. Nat Commun 2011, 2:483.
-
(2011)
Nat Commun
, vol.2
, pp. 483
-
-
Peralta-Yahya, P.P.1
Ouellet, M.2
Chan, R.3
Mukhopadhyay, A.4
Keasling, J.D.5
Lee, T.S.6
-
54
-
-
84856074574
-
An engineered microbial platform for direct biofuel production from brown macroalgae
-
Wargacki A.J., Leonard E., Win M.N., Regitsky D.D., Santos C.N., Kim P.B., Cooper S.R., Raisner R.M., Herman A., Sivitz A.B., et al. An engineered microbial platform for direct biofuel production from brown macroalgae. Science 2012, 335:308-313.
-
(2012)
Science
, vol.335
, pp. 308-313
-
-
Wargacki, A.J.1
Leonard, E.2
Win, M.N.3
Regitsky, D.D.4
Santos, C.N.5
Kim, P.B.6
Cooper, S.R.7
Raisner, R.M.8
Herman, A.9
Sivitz, A.B.10
-
55
-
-
55549116661
-
Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene
-
Anthony J., Anthony L., Nowroozi F., Kwon G., Newman J., Keasling J. Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene. Metab Eng 2009, 11:13-19.
-
(2009)
Metab Eng
, vol.11
, pp. 13-19
-
-
Anthony, J.1
Anthony, L.2
Nowroozi, F.3
Kwon, G.4
Newman, J.5
Keasling, J.6
-
56
-
-
84055200869
-
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli
-
Bokinsky G., Peralta-Yahya P.P., George A., Holmes B.M., Steen E.J., Dietrich J., Soon Lee T., Tullman-Ercek D., Voigt C.A., Simmons B.A., et al. Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proc Natl Acad Sci U S A 2011, 108:19949-19954.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 19949-19954
-
-
Bokinsky, G.1
Peralta-Yahya, P.P.2
George, A.3
Holmes, B.M.4
Steen, E.J.5
Dietrich, J.6
Soon Lee, T.7
Tullman-Ercek, D.8
Voigt, C.A.9
Simmons, B.A.10
-
57
-
-
36249017917
-
Programming gene expression with combinatorial promoters
-
Cox R.S., Surette M.G., Elowitz M.B. Programming gene expression with combinatorial promoters. Mol Syst Biol 2007, 3.
-
(2007)
Mol Syst Biol
, pp. 3
-
-
Cox, R.S.1
Surette, M.G.2
Elowitz, M.B.3
-
58
-
-
83055177124
-
Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach
-
Blazeck J., Liu L., Redden H., Alper H. Tuning gene expression in Yarrowia lipolytica by a hybrid promoter approach. Appl Environ Microbiol 2011, 77:7905-7914.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7905-7914
-
-
Blazeck, J.1
Liu, L.2
Redden, H.3
Alper, H.4
-
59
-
-
84857050180
-
Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways
-
Michener J.K., Thodey K., Liang J.C., Smolke C.D. Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways. Metab Eng 2012, 14:212-222.
-
(2012)
Metab Eng
, vol.14
, pp. 212-222
-
-
Michener, J.K.1
Thodey, K.2
Liang, J.C.3
Smolke, C.D.4
-
60
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
946-U112
-
Salis H., Mirsky E., Voigt C. Automated design of synthetic ribosome binding sites to control protein expression. Nat Biotechnol 2009, 27. 946-U112.
-
(2009)
Nat Biotechnol
, vol.27
-
-
Salis, H.1
Mirsky, E.2
Voigt, C.3
-
61
-
-
66149172363
-
Diversity-based, model-guided construction of synthetic gene networks with predicted functions
-
Ellis T., Wang X., Collins J.J. Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nat Biotechnol 2009, 27:465-471.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 465-471
-
-
Ellis, T.1
Wang, X.2
Collins, J.J.3
-
62
-
-
84859776222
-
The future of metabolic engineering and synthetic biology: towards a systematic practice
-
Yadav V.G., De Mey M., Giaw Lim C., Ajikumar P.K., Stephanopoulos G. The future of metabolic engineering and synthetic biology: towards a systematic practice. Metab Eng 2012, 14:233-241.
-
(2012)
Metab Eng
, vol.14
, pp. 233-241
-
-
Yadav, V.G.1
De Mey, M.2
Giaw Lim, C.3
Ajikumar, P.K.4
Stephanopoulos, G.5
-
63
-
-
39149097549
-
Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media
-
Xu P., Ding Z., Qian Z., Zhao C., Zhang K. Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media. Enzyme Microb Technol 2008, 42:325-331.
-
(2008)
Enzyme Microb Technol
, vol.42
, pp. 325-331
-
-
Xu, P.1
Ding, Z.2
Qian, Z.3
Zhao, C.4
Zhang, K.5
-
64
-
-
68449088806
-
Synthetic protein scaffolds provide modular control over metabolic flux
-
Dueber J.E., Wu G.C., Malmirchegini G.R., Moon T.S., Petzold C.J., Ullal A.V., Prather K.L.J., Keasling J.D. Synthetic protein scaffolds provide modular control over metabolic flux. Nat Biotechnol 2009, 27:753-759.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 753-759
-
-
Dueber, J.E.1
Wu, G.C.2
Malmirchegini, G.R.3
Moon, T.S.4
Petzold, C.J.5
Ullal, A.V.6
Prather, K.L.J.7
Keasling, J.D.8
-
65
-
-
77950863739
-
Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli
-
Moon T.S., Dueber J.E., Shiue E., Prather K.L.J. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. Metab Eng 2010, 12:298-305.
-
(2010)
Metab Eng
, vol.12
, pp. 298-305
-
-
Moon, T.S.1
Dueber, J.E.2
Shiue, E.3
Prather, K.L.J.4
-
66
-
-
84864080129
-
Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome
-
Sun J., Wen F., Si T., Xu J.-H., Zhao H. Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome. Appl Environ Microbiol 2012, 78:3837-3845.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 3837-3845
-
-
Sun, J.1
Wen, F.2
Si, T.3
Xu, J.-H.4
Zhao, H.5
-
67
-
-
73149088132
-
Engineering static and dynamic control of synthetic pathways
-
Holtz W.J., Keasling J.D. Engineering static and dynamic control of synthetic pathways. Cell 2010, 140:19-23.
-
(2010)
Cell
, vol.140
, pp. 19-23
-
-
Holtz, W.J.1
Keasling, J.D.2
-
68
-
-
84859633048
-
Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
-
Zhang F., Carothers J.M., Keasling J.D. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat Biotechnol 2012, 30:354-359.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 354-359
-
-
Zhang, F.1
Carothers, J.M.2
Keasling, J.D.3
-
69
-
-
84859471521
-
Regulatory architecture determines optimal regulation of gene expression in metabolic pathways
-
Chubukov V., Zuleta I.A., Li H. Regulatory architecture determines optimal regulation of gene expression in metabolic pathways. Proc Natl Acad Sci U S A 2012, 109:5127-5132.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 5127-5132
-
-
Chubukov, V.1
Zuleta, I.A.2
Li, H.3
-
70
-
-
68749118345
-
Defining network topologies that can achieve biochemical adaptation
-
Ma W., Trusina A., El-Samad H., Lim W.A., Tang C. Defining network topologies that can achieve biochemical adaptation. Cell 2009, 138:760-773.
-
(2009)
Cell
, vol.138
, pp. 760-773
-
-
Ma, W.1
Trusina, A.2
El-Samad, H.3
Lim, W.A.4
Tang, C.5
-
71
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang H.H., Isaacs F.J., Carr P.A., Sun Z.Z., Xu G., Forest C.R., Church G.M. Programming cells by multiplex genome engineering and accelerated evolution. Nature 2009, 460:894-898.
-
(2009)
Nature
, vol.460
, pp. 894-898
-
-
Wang, H.H.1
Isaacs, F.J.2
Carr, P.A.3
Sun, Z.Z.4
Xu, G.5
Forest, C.R.6
Church, G.M.7
-
72
-
-
79960502359
-
Precise manipulation of chromosomes in vivo enables genome-wide codon replacement
-
Isaacs F.J., Carr P.A., Wang H.H., Lajoie M.J., Sterling B., Kraal L., Tolonen A.C., Gianoulis T.A., Goodman D.B., Reppas N.B., et al. Precise manipulation of chromosomes in vivo enables genome-wide codon replacement. Science 2011, 333:348-353.
-
(2011)
Science
, vol.333
, pp. 348-353
-
-
Isaacs, F.J.1
Carr, P.A.2
Wang, H.H.3
Lajoie, M.J.4
Sterling, B.5
Kraal, L.6
Tolonen, A.C.7
Gianoulis, T.A.8
Goodman, D.B.9
Reppas, N.B.10
-
73
-
-
79551685675
-
A TALE nuclease architecture for efficient genome editing
-
Miller J.C., Tan S., Qiao G., Barlow K.A., Wang J., Xia D.F., Meng X., Paschon D.E., Leung E., Hinkley S.J., et al. A TALE nuclease architecture for efficient genome editing. Nat Biotechnol 2011, 29:143-148.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 143-148
-
-
Miller, J.C.1
Tan, S.2
Qiao, G.3
Barlow, K.A.4
Wang, J.5
Xia, D.F.6
Meng, X.7
Paschon, D.E.8
Leung, E.9
Hinkley, S.J.10
|