-
1
-
-
0032952229
-
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
-
9847196 10.1093/nar/27.1.260 1:CAS:528:DyaK1MXpsVKhtA%3D%3D
-
Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer EL (1999) Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res 27:260-262
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 260-262
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Finn, R.D.5
Sonnhammer, E.L.6
-
2
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
15223320 10.1016/j.jmb.2004.05.028
-
Bendtsen JD, Nielsen H, von Heijne G, Brunak S (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340:783-795
-
(2004)
J Mol Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
Von Heijne, G.3
Brunak, S.4
-
3
-
-
71049161679
-
Bifidobacterial enolase, a cell surface receptor for human plasminogen involved in the interaction with the host
-
10.1099/mic.0.028795-0 1:CAS:528:DC%2BD1MXhtlenurrM
-
Candela M, Biagi E, Centanni M, Turroni S, Vici M, Musiani F, Vitali B, Bergmann S, Hammerschmidt S, Brigidi P (2009) Bifidobacterial enolase, a cell surface receptor for human plasminogen involved in the interaction with the host. Microbiology (Reading, Engl) 155:3294-3303
-
(2009)
Microbiology (Reading, Engl)
, vol.155
, pp. 3294-3303
-
-
Candela, M.1
Biagi, E.2
Centanni, M.3
Turroni, S.4
Vici, M.5
Musiani, F.6
Vitali, B.7
Bergmann, S.8
Hammerschmidt, S.9
Brigidi, P.10
-
4
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
22797518 10.1038/nature11319 1:CAS:528:DC%2BC38XhtFKiur%2FP
-
Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, Cusack S, Harris HMB, Coakley M, Lakshminarayanan B, O'Sullivan O, Fitzgerald GF, Deane J, O'Connor M, Harnedy N, O'Connor K, O'Mahony D, van Sinderen D, Wallace M, Brennan L, Stanton C, Marchesi JR, Fitzgerald AP, Shanahan F, Hill C, Ross RP, O'Toole PW (2012) Gut microbiota composition correlates with diet and health in the elderly. Nature 488:178-184
-
(2012)
Nature
, vol.488
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
Power, S.E.4
O'Connor, E.M.5
Cusack, S.6
Harris, H.M.B.7
Coakley, M.8
Lakshminarayanan, B.9
O'Sullivan, O.10
Fitzgerald, G.F.11
Deane, J.12
O'Connor, M.13
Harnedy, N.14
O'Connor, K.15
O'Mahony, D.16
Van Sinderen, D.17
Wallace, M.18
Brennan, L.19
Stanton, C.20
Marchesi, J.R.21
Fitzgerald, A.P.22
Shanahan, F.23
Hill, C.24
Ross, R.P.25
O'Toole, P.W.26
more..
-
5
-
-
61449140922
-
Inhibitory effect of conjugated alpha-linolenic acid from bifidobacteria of intestinal origin on SW480 cancer cells
-
19048324 10.1007/s11745-008-3269-z 1:CAS:528:DC%2BD1MXitlWrurw%3D
-
Coakley M, Banni S, Johnson MC, Mills S, Devery R, Fitzgerald G, Paul R, Ross P, Stanton C (2009) Inhibitory effect of conjugated alpha-linolenic acid from bifidobacteria of intestinal origin on SW480 cancer cells. Lipids 44:249-256
-
(2009)
Lipids
, vol.44
, pp. 249-256
-
-
Coakley, M.1
Banni, S.2
Johnson, M.C.3
Mills, S.4
Devery, R.5
Fitzgerald, G.6
Paul, R.7
Ross, P.8
Stanton, C.9
-
6
-
-
0034526747
-
Adhesion, autoaggregation and hydrophobicity of 13 strains of Bifidobacterium longum
-
11123552 10.1046/j.1365-2672.2000.00845.x
-
Del Re B, Sgorbati B, Miglioli M, Palenzona D (2000) Adhesion, autoaggregation and hydrophobicity of 13 strains of Bifidobacterium longum. Lett Appl Microbiol 31:438-442
-
(2000)
Lett Appl Microbiol
, vol.31
, pp. 438-442
-
-
Del Re, B.1
Sgorbati, B.2
Miglioli, M.3
Palenzona, D.4
-
7
-
-
84857128238
-
Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection
-
22308390 10.1073/pnas.1115621109 1:CAS:528:DC%2BC38XislynurY%3D
-
Fanning S, Hall LJ, Cronin M, Zomer A, Macsharry J, Goulding D, O'Connell Motherway M, Shanahan F, Nally K, Dougan G, van Sinderen D (2012) Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci USA 109:2108-2113
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 2108-2113
-
-
Fanning, S.1
Hall, L.J.2
Cronin, M.3
Zomer, A.4
Macsharry, J.5
Goulding, D.6
O'Connell Motherway, M.7
Shanahan, F.8
Nally, K.9
Dougan, G.10
Van Sinderen, D.11
-
8
-
-
80052194287
-
Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium
-
21995649 10.1186/1475-2859-10-S1-S16
-
Foroni E, Serafini F, Amidani D, Turroni F, He F, Bottacini F, O'Connell Motherway M, Viappiani A, Zhang Z, Rivetti C, van Sinderen D, Ventura M (2011) Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium. Microb Cell Fact 10(Suppl 1):S16
-
(2011)
Microb Cell Fact
, vol.10
, Issue.SUPPL. 1
, pp. 16
-
-
Foroni, E.1
Serafini, F.2
Amidani, D.3
Turroni, F.4
He, F.5
Bottacini, F.6
O'Connell Motherway, M.7
Viappiani, A.8
Zhang, Z.9
Rivetti, C.10
Van Sinderen, D.11
Ventura, M.12
-
9
-
-
79251584066
-
Bifidobacteria can protect from enteropathogenic infection through production of acetate
-
21270894 10.1038/nature09646 1:CAS:528:DC%2BC3MXhtFShtLs%3D
-
Fukuda S, Toh H, Hase K, Oshima K, Nakanishi Y, Yoshimura K, Tobe T, Clarke JM, Topping DL, Suzuki T, Taylor TD, Itoh K, Kikuchi J, Morita H, Hattori M, Ohno H (2011) Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature 469:543-547
-
(2011)
Nature
, vol.469
, pp. 543-547
-
-
Fukuda, S.1
Toh, H.2
Hase, K.3
Oshima, K.4
Nakanishi, Y.5
Yoshimura, K.6
Tobe, T.7
Clarke, J.M.8
Topping, D.L.9
Suzuki, T.10
Taylor, T.D.11
Itoh, K.12
Kikuchi, J.13
Morita, H.14
Hattori, M.15
Ohno, H.16
-
10
-
-
15844431346
-
PSORTb v. 2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
-
15501914 10.1093/bioinformatics/bti057 1:CAS:528:DC%2BD2MXhslSltb8%3D
-
Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, Ester M, Brinkman FSL (2005) PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21:617-623
-
(2005)
Bioinformatics
, vol.21
, pp. 617-623
-
-
Gardy, J.L.1
Laird, M.R.2
Chen, F.3
Rey, S.4
Walsh, C.J.5
Ester, M.6
Brinkman, F.S.L.7
-
11
-
-
84862183876
-
Improved adhesive properties of recombinant bifidobacteria expressing the Bifidobacterium bifidum-specific lipoprotein BopA
-
22694891 10.1186/1475-2859-11-80 1:CAS:528:DC%2BC38XhtlWrs7nO
-
Gleinser M, Grimm V, Zhurina D, Yuan J, Riedel CU (2012) Improved adhesive properties of recombinant bifidobacteria expressing the Bifidobacterium bifidum-specific lipoprotein BopA. Microb Cell Fact 11:80
-
(2012)
Microb Cell Fact
, vol.11
, pp. 80
-
-
Gleinser, M.1
Grimm, V.2
Zhurina, D.3
Yuan, J.4
Riedel, C.U.5
-
12
-
-
84864094137
-
Role of extracellular transaldolase from Bifidobacterium bifidum in mucin adhesion and aggregation
-
22447584 10.1128/AEM.08024-11
-
González-Rodríguez I, Sánchez B, Ruiz L, Turroni F, Ventura M, Ruas-Madiedo P, Gueimonde M, Margolles A (2012) Role of extracellular transaldolase from Bifidobacterium bifidum in mucin adhesion and aggregation. Appl Environ Microbiol 78:3992-3998
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 3992-3998
-
-
González-Rodríguez, I.1
Sánchez, B.2
Ruiz, L.3
Turroni, F.4
Ventura, M.5
Ruas-Madiedo, P.6
Gueimonde, M.7
Margolles, A.8
-
13
-
-
49449116100
-
Implication of an outer surface lipoprotein in adhesion of Bifidobacterium bifidum to Caco-2 cells
-
18539800 10.1128/AEM.00124-08 1:CAS:528:DC%2BD1cXpslKktro%3D
-
Guglielmetti S, Tamagnini I, Mora D, Minuzzo M, Scarafoni A, Arioli S, Hellman J, Karp M, Parini C (2008) Implication of an outer surface lipoprotein in adhesion of Bifidobacterium bifidum to Caco-2 cells. Appl Environ Microbiol 74:4695-4702
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4695-4702
-
-
Guglielmetti, S.1
Tamagnini, I.2
Mora, D.3
Minuzzo, M.4
Scarafoni, A.5
Arioli, S.6
Hellman, J.7
Karp, M.8
Parini, C.9
-
14
-
-
79951816315
-
Architects at the bacterial surface - Sortases and the assembly of pili with isopeptide bonds
-
21326273 10.1038/nrmicro2520 1:CAS:528:DC%2BC3MXhvFCntrk%3D
-
Hendrickx APA, Budzik JM, Oh S-Y, Schneewind O (2011) Architects at the bacterial surface - sortases and the assembly of pili with isopeptide bonds. Nat Rev Microbiol 9:166-176
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 166-176
-
-
Hendrickx, A.P.A.1
Budzik, J.M.2
Oh, S.-Y.3
Schneewind, O.4
-
15
-
-
77950369259
-
Moonlighting proteins: An intriguing mode of multitasking
-
20144902 10.1016/j.bbamcr.2010.01.022 1:CAS:528:DC%2BC3cXjt1Gks7w%3D
-
Huberts DHEW, van der Klei IJ (2010) Moonlighting proteins: an intriguing mode of multitasking. Biochim Biophys Acta 1803:520-525
-
(2010)
Biochim Biophys Acta
, vol.1803
, pp. 520-525
-
-
Huberts, D.1
Van Der Klei, I.J.2
-
16
-
-
79955109038
-
Beneficial effects of probiotic bifidobacterium and galacto- oligosaccharide in patients with ulcerative colitis: A randomized controlled study
-
21525768 10.1159/000322977
-
Ishikawa H, Matsumoto S, Ohashi Y, Imaoka A, Setoyama H, Umesaki Y, Tanaka R, Otani T (2011) Beneficial effects of probiotic bifidobacterium and galacto-oligosaccharide in patients with ulcerative colitis: a randomized controlled study. Digestion 84:128-133
-
(2011)
Digestion
, vol.84
, pp. 128-133
-
-
Ishikawa, H.1
Matsumoto, S.2
Ohashi, Y.3
Imaoka, A.4
Setoyama, H.5
Umesaki, Y.6
Tanaka, R.7
Otani, T.8
-
17
-
-
65949115304
-
2-DE and MS analysis of key proteins in the adhesion of Lactobacillus plantarum, a first step toward early selection of probiotics based on bacterial biomarkers
-
19309013 10.1002/elps.200800399 1:CAS:528:DC%2BD1MXkslCltLg%3D
-
Izquierdo E, Horvatovich P, Marchioni E, Aoude-Werner D, Sanz Y, Ennahar S (2009) 2-DE and MS analysis of key proteins in the adhesion of Lactobacillus plantarum, a first step toward early selection of probiotics based on bacterial biomarkers. Electrophoresis 30:949-956
-
(2009)
Electrophoresis
, vol.30
, pp. 949-956
-
-
Izquierdo, E.1
Horvatovich, P.2
Marchioni, E.3
Aoude-Werner, D.4
Sanz, Y.5
Ennahar, S.6
-
18
-
-
70350134948
-
Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein
-
19805152 10.1073/pnas.0908876106 1:CAS:528:DC%2BD1MXhtlWqsL%2FO
-
Kankainen M, Paulin L, Tynkkynen S, von Ossowski I, Reunanen J, Partanen P, Satokari R, Vesterlund S, Hendrickx APA, Lebeer S, De Keersmaecker SCJ, Vanderleyden J, Hämäläinen T, Laukkanen S, Salovuori N, Ritari J, Alatalo E, Korpela R, Mattila-Sandholm T, Lassig A, Hatakka K, Kinnunen KT, Karjalainen H, Saxelin M, Laakso K, Surakka A, Palva A, Salusjärvi T, Auvinen P, de Vos WM (2009) Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein. Proc Natl Acad Sci USA 106:17193-17198
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17193-17198
-
-
Kankainen, M.1
Paulin, L.2
Tynkkynen, S.3
Von Ossowski, I.4
Reunanen, J.5
Partanen, P.6
Satokari, R.7
Vesterlund, S.8
Hendrickx, A.P.A.9
Lebeer, S.10
De Keersmaecker, S.C.J.11
Vanderleyden, J.12
Hämäläinen, T.13
Laukkanen, S.14
Salovuori, N.15
Ritari, J.16
Alatalo, E.17
Korpela, R.18
Mattila-Sandholm, T.19
Lassig, A.20
Hatakka, K.21
Kinnunen, K.T.22
Karjalainen, H.23
Saxelin, M.24
Laakso, K.25
Surakka, A.26
Palva, A.27
Salusjärvi, T.28
Auvinen, P.29
De Vos, W.M.30
more..
-
19
-
-
19544366408
-
Commensal gut bacteria: Mechanisms of immune modulation
-
15922949 10.1016/j.it.2005.04.008 1:CAS:528:DC%2BD2MXks1Wqu70%3D
-
Kelly D, Conway S, Aminov R (2005) Commensal gut bacteria: mechanisms of immune modulation. Trends Immunol 26:326-333
-
(2005)
Trends Immunol
, vol.26
, pp. 326-333
-
-
Kelly, D.1
Conway, S.2
Aminov, R.3
-
20
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
11152613 10.1006/jmbi.2000.4315 1:CAS:528:DC%2BD3MXisFCguw%3D%3D
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567-580
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.4
-
21
-
-
80054119261
-
Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium
-
21883975 10.1111/j.1751-7915.2011.00275.x 1:CAS:528:DC%2BC3MXhsFemsrvK
-
Laakso K, Koskenniemi K, Koponen J, Kankainen M, Surakka A, Salusjärvi T, Auvinen P, Savijoki K, Nyman TA, Kalkkinen N, Tynkkynen S, Varmanen P (2011) Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium. Microb Biotechnol 4:746-766
-
(2011)
Microb Biotechnol
, vol.4
, pp. 746-766
-
-
Laakso, K.1
Koskenniemi, K.2
Koponen, J.3
Kankainen, M.4
Surakka, A.5
Salusjärvi, T.6
Auvinen, P.7
Savijoki, K.8
Nyman, T.A.9
Kalkkinen, N.10
Tynkkynen, S.11
Varmanen, P.12
-
22
-
-
84856777535
-
Bifidobacterium longum CECT 7347 modulates immune responses in a gliadin-induced enteropathy animal model
-
22348021 10.1371/journal.pone.0030744 1:CAS:528:DC%2BC38XivVKjs7k%3D
-
Laparra JM, Olivares M, Gallina O, Sanz Y (2012) Bifidobacterium longum CECT 7347 modulates immune responses in a gliadin-induced enteropathy animal model. PLoS One 7:e30744
-
(2012)
PLoS One
, vol.7
, pp. 30744
-
-
Laparra, J.M.1
Olivares, M.2
Gallina, O.3
Sanz, Y.4
-
23
-
-
84861659935
-
Human milk oligosaccharide consumption by intestinal microbiota
-
22647041 10.1111/j.1469-0691.2012.03863.x 1:CAS:528:DC%2BC38XhtFOrsr7F
-
Marcobal A, Sonnenburg JL (2012) Human milk oligosaccharide consumption by intestinal microbiota. Clin Microbiol Infect 18(Suppl 4):12-15
-
(2012)
Clin Microbiol Infect
, vol.18
, Issue.SUPPL. 4
, pp. 12-15
-
-
Marcobal, A.1
Sonnenburg, J.L.2
-
24
-
-
21244451548
-
Culture-dependent and culture-independent qualitative analysis of probiotic products claimed to contain bifidobacteria
-
15992621 10.1016/j.ijfoodmicro.2004.11.018 1:STN:280: DC%2BD2Mzkt1Ggtw%3D%3D
-
Masco L, Huys G, De Brandt E, Temmerman R, Swings J (2005) Culture-dependent and culture-independent qualitative analysis of probiotic products claimed to contain bifidobacteria. Int J Food Microbiol 102:221-230
-
(2005)
Int J Food Microbiol
, vol.102
, pp. 221-230
-
-
Masco, L.1
Huys, G.2
De Brandt, E.3
Temmerman, R.4
Swings, J.5
-
25
-
-
79960586903
-
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor
-
21690406 10.1073/pnas.1105380108
-
O'Connell Motherway M, Zomer A, Leahy SC, Reunanen J, Bottacini F, Claesson MJ, O'Brien F, Flynn K, Casey PG, Munoz JAM, Kearney B, Houston AM, O'Mahony C, Higgins DG, Shanahan F, Palva A, de Vos WM, Fitzgerald GF, Ventura M, O'Toole PW, van Sinderen D (2011) Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci USA 108:11217-11222
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 11217-11222
-
-
O'Connell Motherway, M.1
Zomer, A.2
Leahy, S.C.3
Reunanen, J.4
Bottacini, F.5
Claesson, M.J.6
O'Brien, F.7
Flynn, K.8
Casey, P.G.9
Munoz, J.A.M.10
Kearney, B.11
Houston, A.M.12
O'Mahony, C.13
Higgins, D.G.14
Shanahan, F.15
Palva, A.16
De Vos, W.M.17
Fitzgerald, G.F.18
Ventura, M.19
O'Toole, P.W.20
Van Sinderen, D.21
more..
-
26
-
-
78049500723
-
Functional and phenotypic characterization of a protein from Lactobacillus acidophilus involved in cell morphology, stress tolerance and adherence to intestinal cells
-
10.1099/mic.0.043158-0
-
O'Flaherty SJ, Klaenhammer TR (2010) Functional and phenotypic characterization of a protein from Lactobacillus acidophilus involved in cell morphology, stress tolerance and adherence to intestinal cells. Microbiology (Reading, Engl) 156:3360-3367
-
(2010)
Microbiology (Reading, Engl)
, vol.156
, pp. 3360-3367
-
-
O'Flaherty, S.J.1
Klaenhammer, T.R.2
-
27
-
-
33744821354
-
The correlation between surface hydrophobicity and adherence of Bifidobacterium strains from centenarians' feces
-
16765861 10.1016/j.anaerobe.2006.03.001 1:CAS:528:DC%2BD28XlsFOhtbY%3D
-
Pan W-H, Li P-L, Liu Z (2006) The correlation between surface hydrophobicity and adherence of Bifidobacterium strains from centenarians' feces. Anaerobe 12:148-152
-
(2006)
Anaerobe
, vol.12
, pp. 148-152
-
-
Pan, W.-H.1
Li, P.-L.2
Liu, Z.3
-
29
-
-
79960844328
-
Treatment with Bifidobacterium bifidum 17 partially protects mice from Th1-driven inflammation in a chemically induced model of colitis
-
21257218 10.1016/j.ijfoodmicro.2010.12.020 1:CAS:528:DC%2BC3MXpslajt7o%3D
-
Philippe D, Heupel E, Blum-Sperisen S, Riedel CU (2011) Treatment with Bifidobacterium bifidum 17 partially protects mice from Th1-driven inflammation in a chemically induced model of colitis. Int J Food Microbiol 149:45-49
-
(2011)
Int J Food Microbiol
, vol.149
, pp. 45-49
-
-
Philippe, D.1
Heupel, E.2
Blum-Sperisen, S.3
Riedel, C.U.4
-
30
-
-
77951574475
-
Selection of bifidobacteria based on adhesion and anti-inflammatory capacity in vitro for amelioration of murine colitis
-
20228095 10.1128/AEM.03127-09 1:CAS:528:DC%2BC3cXmtVWhu7s%3D
-
Preising J, Philippe D, Gleinser M, Wei H, Blum S, Eikmanns BJ, Niess J-H, Riedel CU (2010) Selection of bifidobacteria based on adhesion and anti-inflammatory capacity in vitro for amelioration of murine colitis. Appl Environ Microbiol 76:3048-3051
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3048-3051
-
-
Preising, J.1
Philippe, D.2
Gleinser, M.3
Wei, H.4
Blum, S.5
Eikmanns, B.J.6
Niess, J.-H.7
Riedel, C.U.8
-
31
-
-
60149111839
-
Pili in Gram-negative and Gram-positive bacteria - Structure, assembly and their role in disease
-
18953686 10.1007/s00018-008-8477-4 1:CAS:528:DC%2BD1MXhvVOju7s%3D
-
Proft T, Baker EN (2009) Pili in Gram-negative and Gram-positive bacteria - structure, assembly and their role in disease. Cell Mol Life Sci 66:613-635
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 613-635
-
-
Proft, T.1
Baker, E.N.2
-
32
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
20203603 10.1038/nature08821 1:CAS:528:DC%2BC3cXislahsLc%3D
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto J-M, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Li S, Jian Y, Zhou Y, Li Y, Zhang X, Li S, Qin N, Yang H, Wang J, Brunak S, Doré J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J, Bork P, Ehrlich SD, Wang J (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464:59-65
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.-M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
Sicheritz-Ponten, T.31
Turner, K.32
Zhu, H.33
Yu, C.34
Li, S.35
Jian, Y.36
Zhou, Y.37
Li, Y.38
Zhang, X.39
Li, S.40
Qin, N.41
Yang, H.42
Wang, J.43
Brunak, S.44
Doré, J.45
Guarner, F.46
Kristiansen, K.47
Pedersen, O.48
Parkhill, J.49
Weissenbach, J.50
Bork, P.51
Ehrlich, S.D.52
Wang, J.53
more..
-
33
-
-
33745448915
-
Anti-inflammatory effects of bifidobacteria by inhibition of LPS-induced NF-kappaB activation
-
16773690
-
Riedel CU, Foata F, Philippe D, Adolfsson O, Eikmanns B-J, Blum S (2006a) Anti-inflammatory effects of bifidobacteria by inhibition of LPS-induced NF-kappaB activation. World J Gastroenterol 12:3729-3735
-
(2006)
World J Gastroenterol
, vol.12
, pp. 3729-3735
-
-
Riedel, C.U.1
Foata, F.2
Philippe, D.3
Adolfsson, O.4
Eikmanns, B.-J.5
Blum, S.6
-
34
-
-
33745806239
-
Interaction of bifidobacteria with Caco-2 cells-adhesion and impact on expression profiles
-
16713644 10.1016/j.ijfoodmicro.2006.01.040 1:CAS:528:DC%2BD28XntVymtbc%3D
-
Riedel CU, Foata F, Goldstein DR, Blum S, Eikmanns BJ (2006b) Interaction of bifidobacteria with Caco-2 cells-adhesion and impact on expression profiles. Int J Food Microbiol 110:62-68
-
(2006)
Int J Food Microbiol
, vol.110
, pp. 62-68
-
-
Riedel, C.U.1
Foata, F.2
Goldstein, D.R.3
Blum, S.4
Eikmanns, B.J.5
-
35
-
-
79951583568
-
Myosin-cross-reactive antigen (MCRA) protein from Bifidobacterium breve is a FAD-dependent fatty acid hydratase which has a function in stress protection
-
21329502 10.1186/1471-2091-12-9 1:CAS:528:DC%2BC3MXisl2is7g%3D
-
Rosberg-Cody E, Liavonchanka A, Göbel C, Ross RP, O'Sullivan O, Fitzgerald GF, Feussner I, Stanton C (2011) Myosin-cross-reactive antigen (MCRA) protein from Bifidobacterium breve is a FAD-dependent fatty acid hydratase which has a function in stress protection. BMC Biochem 12:9
-
(2011)
BMC Biochem
, vol.12
, pp. 9
-
-
Rosberg-Cody, E.1
Liavonchanka, A.2
Göbel, C.3
Ross, R.P.4
O'Sullivan, O.5
Fitzgerald, G.F.6
Feussner, I.7
Stanton, C.8
-
36
-
-
64049096809
-
The cell-envelope proteome of Bifidobacterium longum in an in vitro bile environment
-
10.1099/mic.0.024273-0 1:CAS:528:DC%2BD1MXjs1Wktrk%3D
-
Ruiz L, Couté Y, Sánchez B, de los Reyes-Gavilán CG, Sanchez J-C, Margolles A (2009) The cell-envelope proteome of Bifidobacterium longum in an in vitro bile environment. Microbiology (Reading, Engl) 155:957-967
-
(2009)
Microbiology (Reading, Engl)
, vol.155
, pp. 957-967
-
-
Ruiz, L.1
Couté, Y.2
Sánchez, B.3
De Los Reyes-Gavilán, C.G.4
Sanchez, J.-C.5
Margolles, A.6
-
37
-
-
0031813130
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
9399864 10.1093/nar/26.1.320 1:CAS:528:DyaK1cXovVChtw%3D%3D
-
Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R (1998) Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res 26:320-322
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
38
-
-
2542456800
-
Commensal bacteria (normal microflora), mucosal immunity and chronic inflammatory and autoimmune diseases
-
15158604 10.1016/j.imlet.2004.02.005
-
Tlaskalová-Hogenová H, Stepánková R, Hudcovic T, Tucková L, Cukrowska B, Lodinová- Zádníková R, Kozáková H, Rossmann P, Bártová J, Sokol D, Funda DP, Borovská D, Reháková Z, Sinkora J, Hofman J, Drastich P, Kokesová A (2004) Commensal bacteria (normal microflora), mucosal immunity and chronic inflammatory and autoimmune diseases. Immunol Lett 93:97-108
-
(2004)
Immunol Lett
, vol.93
, pp. 97-108
-
-
Tlaskalová-Hogenová, H.1
Stepánková, R.2
Hudcovic, T.3
Tucková, L.4
Cukrowska, B.5
Lodinová- Zádníková, R.6
Kozáková, H.7
Rossmann, P.8
Bártová, J.9
Sokol, D.10
Funda, D.P.11
Borovská, D.12
Reháková, Z.13
Sinkora, J.14
Hofman, J.15
Drastich, P.16
Kokesová, A.17
-
39
-
-
34247221579
-
The tad locus: Postcards from the widespread colonization island
-
17435791 10.1038/nrmicro1636 1:CAS:528:DC%2BD2sXkt1Chsbw%3D
-
Tomich M, Planet PJ, Figurski DH (2007) The tad locus: postcards from the widespread colonization island. Nat Rev Microbiol 5:363-375
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 363-375
-
-
Tomich, M.1
Planet, P.J.2
Figurski, D.H.3
-
40
-
-
84861011960
-
Diversity of Bifidobacteria within the Infant Gut Microbiota
-
22606315 10.1371/journal.pone.0036957 1:CAS:528:DC%2BC38XnslOrurg%3D
-
Turroni F, Peano C, Pass DA, Foroni E, Severgnini M, Claesson MJ, Kerr C, Hourihane J, Murray D, Fuligni F, Gueimonde M, Margolles A, De Bellis G, O'Toole PW, van Sinderen D, Marchesi JR, Ventura M (2012) Diversity of Bifidobacteria within the Infant Gut Microbiota. PLoS One 7:e36957
-
(2012)
PLoS One
, vol.7
, pp. 36957
-
-
Turroni, F.1
Peano, C.2
Pass, D.A.3
Foroni, E.4
Severgnini, M.5
Claesson, M.J.6
Kerr, C.7
Hourihane, J.8
Murray, D.9
Fuligni, F.10
Gueimonde, M.11
Margolles, A.12
De Bellis, G.13
O'Toole, P.W.14
Van Sinderen, D.15
Marchesi, J.R.16
Ventura, M.17
-
41
-
-
84866895877
-
Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria
-
22902802 10.1016/j.tim.2012.07.002 1:CAS:528:DC%2BC38Xht1aktL%2FL
-
Ventura M, Turroni F, Motherway MO, MacSharry J, van Sinderen D (2012) Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol 20:467-476
-
(2012)
Trends Microbiol
, vol.20
, pp. 467-476
-
-
Ventura, M.1
Turroni, F.2
Motherway, M.O.3
Macsharry, J.4
Van Sinderen, D.5
-
42
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
22699611 1:CAS:528:DC%2BC38Xos1emtLc%3D
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI (2012) Human gut microbiome viewed across age and geography. Nature 486:222-227
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
43
-
-
0034800374
-
InterProScan - -an integration platform for the signature-recognition methods in InterPro
-
11590104 10.1093/bioinformatics/17.9.847 1:CAS:528:DC%2BD3MXotFehsro%3D
-
Zdobnov EM, Apweiler R (2001) InterProScan - -an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17:847-848
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
44
-
-
78650164407
-
Complete genome sequence of Bifidobacterium bifidum S17
-
21037011 10.1128/JB.01180-10 1:CAS:528:DC%2BC3MXisVyis70%3D
-
Zhurina D, Zomer A, Gleinser M, Brancaccio VF, Auchter M, Waidmann MS, Westermann C, van Sinderen D, Riedel CU (2011) Complete genome sequence of Bifidobacterium bifidum S17. J Bacteriol 193:301-302
-
(2011)
J Bacteriol
, vol.193
, pp. 301-302
-
-
Zhurina, D.1
Zomer, A.2
Gleinser, M.3
Brancaccio, V.F.4
Auchter, M.5
Waidmann, M.S.6
Westermann, C.7
Van Sinderen, D.8
Riedel, C.U.9
|