Membrane-mediated aggregation of curvature-inducing nematogens and membrane tubulation

Biophysical Journal

Volumn 104, Issue 5, 2013, Pages 1018-1028

  Ramakrishnan, N ^a   Sunil Kumar, P B ^a   Ipsen, John H ^b  

^a INDIAN INSTITUTE OF TECHNOLOGY MADRAS   (India)

^b UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE LIPID; MEMBRANE PROTEIN;

ARTICLE; CELL MEMBRANE; CHEMICAL STRUCTURE; CHEMISTRY; LIQUID CRYSTAL; PROTEIN TERTIARY STRUCTURE;

CELL MEMBRANE; LIQUID CRYSTALS; MEMBRANE LIPIDS; MEMBRANE PROTEINS; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY;

EID: 84874867082     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2012.12.045     Document Type: Article

References (60)

1. A. Frost, V.M. Unger, and P. De Camilli The BAR domain superfamily: membrane-molding macromolecules Cell 137 2009 191 196
2. Ł. Opaliński, and J.A.K.W. Kiel I.J. van der Klei Membrane curvature during peroxisome fission requires Pex11 EMBO J. 30 2011 5 16
3. B. Antonny Membrane deformation by protein coats Curr. Opin. Cell Biol. 18 2006 386 394
4. E. Sackmann, R. Kotulla, and F.-J. Heiszler On the role of lipid-bilayer elasticity for the lipid-protein interaction and the indirect protein-protein coupling Can. J. Biochem. Cell Biol. 62 1984 778 788
5. S. Leibler Curvature instability in membranes J. Phys. II (Fr.) 47 1986 507 516
6. N. Ramakrishnan, P.B. Sunil Kumar, and J.H. Ipsen Monte Carlo simulations of fluid vesicles with in-plane orientational ordering Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 81 2010 041922
7. B.J. Peter, and H.M. Kent H.T. McMahon BAR domains as sensors of membrane curvature: the amphiphysin BAR structure Science 303 2004 495 499
8. W. Weissenhorn Crystal structure of the endophilin-A1 BAR domain J. Mol. Biol. 351 2005 653 661
9. H.T. McMahon, and J.L. Gallop Membrane curvature and mechanisms of dynamic cell membrane remodeling Nature 438 2005 590 596
10. P.D. Blood, and G.A. Voth Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations Proc. Natl. Acad. Sci. USA 103 2006 15068 15072
11. A. Arkhipov, Y. Yin, and K. Schulten Four-scale description of membrane sculpting by BAR domains Biophys. J. 95 2008 2806 2821
12. A.V. Shnyrova, V.A. Frolov, and J. Zimmerberg Domain-driven morphogenesis of cellular membranes Curr. Biol. 19 2009 R772 R780
13. T.M. Williams, and M.P. Lisanti The caveolin proteins Genome Biol. 5 2004 214
14. G.K. Voeltz, and W.A. Prinz T.A. Rapoport A class of membrane proteins shaping the tubular endoplasmic reticulum Cell 124 2006 573 586
15. Y. Shibata, and T. Shemesh T.A. Rapoport Mechanisms determining the morphology of the peripheral ER Cell 143 2010 774 788
16. K. Farsad, and N. Ringstad P. De Camilli Generation of high curvature membranes mediated by direct endophilin bilayer interactions J. Cell Biol. 155 2001 193 200
17. J.L. Gallop, and C.C. Jao H.T. McMahon Mechanism of endophilin N-BAR domain-mediated membrane curvature EMBO J. 25 2006 2898 2910
18. H. Bouvrais, and P. Méléard J.H. Ipsen Softening of POPC membranes by magainin Biophys. Chem. 137 2008 7 12
19. F. Campelo, H.T. McMahon, and M.M. Kozlov The hydrophobic insertion mechanism of membrane curvature generation by proteins Biophys. J. 95 2008 2325 2339
20. A. Shimada, and H. Niwa S. Yokoyama Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis Cell 129 2007 761 772
21. R.C. Kurten, and A.D. Eddington B.B. Shank Self-assembly and binding of a sorting nexin to sorting endosomes J. Cell Sci. 114 2001 1743 1756
22. S. Mayor, J.F. Presley, and F.R. Maxfield Sorting of membrane components from endosomes and subsequent recycling to the cell surface occurs by a bulk flow process J. Cell Biol. 121 1993 1257 1269
23. K.A. Shepard, and M.P. Yaffe The yeast dynamin-like protein, Mgm1p, functions on the mitochondrial outer membrane to mediate mitochondrial inheritance J. Cell Biol. 144 1999 711 720
24. A. Razzaq, and I.M. Robinson C.J. O'Kane Amphiphysin is necessary for organization of the excitation-contraction coupling machinery of muscles, but not for synaptic vesicle endocytosis in Drosophila Genes Dev. 15 2001 2967 2979
25. S.M. Sweitzer, and J.E. Hinshaw Dynamin undergoes a GTP-dependent conformational change causing vesiculation Cell 98 1998 1021 1029
26. H.H. Low, and C. Sachse J. Löwe Structure of a bacterial dynamin-like protein lipid tube provides a mechanism for assembly and membrane curving Cell 139 2009 1342 1352
27. M.N. Lebbink, and N. Jiménez J.A. Post Spiral coating of the endothelial caveolar membranes as revealed by electron tomography and template matching Traffic 11 2010 138 150
28. P. Sens, and M.S. Turner Theoretical model for the formation of caveolae and similar membrane invaginations Biophys. J. 86 2004 2049 2057
29. J.-B. Fournier Nontopological saddle-splay and curvature instabilities from anisotropic membrane inclusions Phys. Rev. Lett. 76 1996 4436 4439
30. J.-B. Fournier, and P. Galatola Bilayer membranes with 2D-nematic order of the surfactant polar heads Braz. J. Phys. 28 1998 329
31. V. Kraij-Iglič, and V. Heinrich B. Zeks Free energy of closed membrane with anisotropic inclusions Eur. Phys. J. B 10 1999 5 8
32. P.G. Dommersnes, and J.-B. Fournier N-body study of anisotropic membrane inclusions: membrane mediated interactions and ordered aggregation Eur. Phys. J. B 12 1999 9 12
33. A. Iglič, T. Slivnik, and V. Kralj-Iglič Elastic properties of biological membranes influenced by attached proteins J. Biomech. 40 2007 2492 2500
34. W. Helfrich Elastic properties of lipid bilayers: theory and possible experiments Z. Naturforsch. C 28 1973 693 703
35. L. Onsager The effects of shape on the interaction of colloidal particles Ann. N. Y. Acad. Sci. 51 1949 627 659
36. J.-M. Park, and T.C. Lubensky Interactions between membrane inclusions on fluctuating membranes J. Phys. I 6 1996 1217
37. K.S. Kim, J. Neu, and G. Oster Curvature-mediated interactions between membrane proteins Biophys. J. 75 1998 2274 2291
38. T. Chou, K.S. Kim, and G. Oster Statistical thermodynamics of membrane bending-mediated protein-protein attractions Biophys. J. 80 2001 1075 1087
39. E.P. Lewandowski, and J.A. Bernate K.J. Stebe Rotation and alignment of anisotropic particles on nonplanar interfaces Langmuir 24 2008 9302 9307
40. E.P. Lewandowski, and J.A. Bernate K.J. Stebe Oriented assembly of anisotropic particles by capillary interactions Soft Matter 5 2009 886
41. A. Frost, and R. Perera V.M. Unger Structural basis of membrane invagination by F-BAR domains Cell 132 2008 807 817
42. L. Peliti, and J. Prost J. Phys. (Fr.) 50 1989 1557 1571
43. J.R. Frank, and M. Kardar Defects in nematic membranes can buckle into pseudospheres Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 77 2008 041705
44. P.B.S. Kumar, and M. Rao Shape instabilities in the dynamics of a two-component fluid membrane Phys. Rev. Lett. 80 1998 2489 2492
45. P.B. Sunil Kumar, G. Gompper, and R. Lipowsky Budding dynamics of multicomponent membranes Phys. Rev. Lett. 86 2001 3911 3914
46. J.R. Henriksen, and T.L. Andresen J.H. Ipsen Understanding detergent effects on lipid membranes: a model study of lysolipids Biophys. J. 98 2010 2199 2205
47. Gerbeaud, C. 1998. Effect of insertion of membrane proteins and peptides on the mechanical properties and morphological changes of giant vesicles [Effect de l'insertion de protéines et de peptides membranaires sur les propriétés mécaniques et les changements morphologiques de vésicules géantes]. PhD thesis. L'Université Bordeaux I, Bordeaux, France.
48. J. Gouttenoire, and P. Roingeard D. Moradpour Amphipathic α-helix AH2 is a major determinant for the oligomerization of hepatitis C virus nonstructural protein 4B J. Virol. 84 2010 12529 12537
49. J.S. Bonifacino, and J.H. Hurley Retromer Curr. Opin. Cell Biol. 20 2008 427 436
50. S.M. Sweitzer, and J.E. Hinshaw Dynamin undergoes a GTP-dependent conformational change causing vesiculation Cell 93 1998 1021 1029
51. B. Sorre, and A. Callan-Jones A. Roux Nature of curvature coupling of amphiphysin with membranes depends on its bound density Proc. Natl. Acad. Sci. USA 109 2012 173 178
52. T.C. Lubensky, and J. Prost Orientational order and vesicle shape J. Phys. II (Fr.) 2 1992 371 382
53. V. Vitelli, and D.R. Nelson Defect generation and deconfinement on corrugated topographies Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 70 2004 051105
54. N. Ramakrishnan, J.H. Ipsen, and P.B. Sunil Kumar Role of disclinations in determining the morphology of deformable fluid interfaces Soft Matter 8 2012 3058 3061
55. A. Roux, and G. Koster P. Bassereau Membrane curvature controls dynamin polymerization Proc. Natl. Acad. Sci. USA 107 2010 4141 4146
56. D. Danino, K.H. Moon, and J.E. Hinshaw Rapid constriction of lipid bilayers by the mechanochemical enzyme dynamin J. Struct. Biol. 147 2004 259 267
57. P. Zhang, and J.E. Hinshaw Three-dimensional reconstruction of dynamin in the constricted state Nat. Cell Biol. 3 2001 922 926
58. A. Roux, and K. Uyhazi P. De Camilli GTP-dependent twisting of dynamin implicates constriction and tension in membrane fission Nature 441 2006 528 531
59. T. Itoh, and P. De Camilli BAR, F-BAR (EFC), and ENTH/ANTH domains in the regulation of membrane-cytosol interfaces and membrane curvature Biochim. Biophys. Acta 1761 2006 897 912
60. Y. Shibata, and C. Voss G.K. Voeltz The reticulon and DP1/Yop1p proteins form immobile oligomers in the tubular endoplasmic reticulum J. Biol. Chem. 283 2008 18892 18904