Duganella sacchari sp. nov. and Duganella radicis sp. nov., two novel species isolated from rhizosphere of field-grown sugar cane

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART3, 2013, Pages 1126-1131

  Madhaiyan, M ^a,b   Poonguzhali, S ^a   Saravanan, V S ^c   Hari, K ^d   Lee, K C ^e   Lee, J S ^e  

^a TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^c Pondicherry University   (India)

^d SUGARCANE BREEDING INSTITUTE   (India)

^e Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACITRACIN; CARBENICILLIN; CEFOTAXIME; CEPHALOSPORIN; CHLORAMPHENICOL; CYSTEINE; DNA; DOXYCYCLINE; ERYTHROMYCIN; FATTY ACID; GENOMIC DNA; GENTAMICIN; GLYCINE; KANAMYCIN; LIPID; NALIDIXIC ACID; NOVOBIOCIN; PENICILLIN G; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; POLYMYXIN B; QUINONE DERIVATIVE; RIFAMPICIN; RNA 16S; SPECTINOMYCIN; TETRACYCLINE; TRIMETHOPRIM; UBIQUINONE; VANCOMYCIN;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM ISOLATE; BETAPROTEOBACTERIA; CELL SHAPE; DUGANELLA RADICIS; DUGANELLA SACCHARI; DUGANELLA ZOGLOEOIDES; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GROWTH; PRIORITY JOURNAL; PROTEOBACTERIA; PSEUDODODUGANELLA VIOLACEINIGRA; RHIZOSPHERE; RHIZOSPHERE BACTERIUM; SOIL; SPECIES DIVERSITY; SUGARCANE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXALOBACTERACEAE; PHOSPHATIDYLETHANOLAMINES; PHOSPHATIDYLGLYCEROLS; PHYLOGENY; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SACCHARUM; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; UBIQUINONE;

EID: 84874855834     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.040584-0     Document Type: Article

References (28)

1. Bozzola, J. J. & Russell, L. D. (1998). Electron Microscopy, 2nd edn. Sudbury, MS: Jones & Bartlett.
2. Chanprame, S., Todd, J. J. & Widholm, J. M. (1996). Prevention of pink-pigmented methylotrophic bacteria (Methylobacterium mesophilicum) contamination of plant tissue cultures. Plant Cell Rep 16, 222-225.
3. DeLong, E. F. (1992). Archaea in coastal marine environments. Proc Natl Acad Sci U S A 89, 5685-5689.
4. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
7. Friedman, B. A., Dugan, P. R., Pfister, R. M. & Remsen, C. C. (1968). Fine structure and composition of the zoogloeal matrix surrounding Zoogloea ramigera. J Bacteriol 96, 2144-2153.
8. Garrity, G. M., Bell, J. A. & Lilburn, T. (2005). The Proteobacteria, Part C, alpha, beta, delta and epsilon Proteobacteria. In Bergey's Manual of Systematic Bacteriology, 2nd Edn, Vol. 2, p. 628. Edited by D. J. Brenner, N. R. Krieg, J. T Staley & G. M. Garrity. New York, Springer.
9. Green, P. N. & Bousfield, I. J. (1982). A taxonomic study of some Gram-negative facultatively methylotrophic bacteria. Microbiol 128, 623-638.
10. Hiraishi, A., Shin, Y. K. & Sugiyama, J. (1997). Proposal to reclassify Zoogloea ramigera IAM 12670 (P. R. Dugan 115) as Duganella zoogloeoides gen. nov., sp. nov. Int J Syst Bacteriol 47, 1249-1252.
11. Kämpfer, P., Wellner, S., Lohse, K., Martin, K. & Lodders, N. (2012). Duganella phyllosphaerae sp. nov., isolated from the leaf surface of Trifolium repens and proposal to reclassify Duganella violaceinigra into a novel genus as Pseudoduganella violceinigra gen. nov., comb. nov. Syst Appl Microbiol 35, 19-23.
12. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
13. Laurent, P., Buchon, L., Guespin-Michel, J. F. & Orange, N. (2000). Production of pectate lyases and cellulases by Chryseomonas luteola strain MFCL0 depends on the growth temperature and the nature of the culture medium: evidence for two critical temperatures. Appl Environ Microbiol 66, 1538-1543.
14. Li, W. J., Zhang, Y. Q., Park, D. J., Li, C. T., Xu, L. H., Kim, C. J. & Jiang, C. L. (2004). Duganella violaceinigra sp. nov., a novel mesophilic bacterium isolated from forest soil. Int J Syst Evol Microbiol 54, 1811-1814.
15. Madhaiyan, M., Poonguzhali, S. & Sa, T. M. (2007b). Metal tolerating methylotrophic bacteria reduces nickel and cadmium toxicity and promotes plant growth of tomato (Lycopersicon esculentum L). Chemosphere 69, 220-228.
16. Madhaiyan, M., Kim, B.-Y., Poonguzhali, S., Kwon, S.-W., Song, M.-H., Ryu, J.-H., Go, S.-J., Koo, B.-S. & Sa, T.-M. (2007c). Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice. Int J Syst Evol Microbiol 57, 326-331.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, K. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
19. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Schwyn, B. & Neilands, J. B. (1987). Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160, 47-56.
22. Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
23. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Evol Bacteriol 44, 846-849.
24. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
25. Tan, Z. Y., Wang, E. T., Peng, G. X., Zhu, M. E., Martínez-Romero, E. & Chen, W. X. (1999). Characterization of bacteria isolated from wild legumes in the north-western regions of China. Int J Syst Bacteriol 49, 1457-1469.
26. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
27. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the Ad Hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
28. Whittenbury, R., Phillips, K. C. & Wilkinson, J. F. (1970). Enrichment, isolation and some properties of methane-utilizing bacteria. J Gen Microbiol 61, 205-218.