Regression models for group testing data with pool dilution effects

Biostatistics

Volumn 14, Issue 2, 2013, Pages 284-298

  McMahan, Christopher S ^a   Tebbs, Joshua M ^b   Bilder, Christopher R ^c  

^a CLEMSON UNIVERSITY   (United States)

^b UNIVERSITY OF SOUTH CAROLINA   (United States)

^c UNIVERSITY OF NEBRASKA LINCOLN   (United States)

Author keywords

Binary response; Biomarker; Maximum likelihood; Pooled testing; Sensitivity; Specificity

Indexed keywords

BIOLOGICAL MARKER;

ARTICLE; BIOSTATISTICS; HEPATITIS B; HUMAN; INFECTION; IRELAND; MASS SCREENING; METHODOLOGY; PRISONER; REGRESSION ANALYSIS; STATISTICAL MODEL; STATISTICS;

BIOLOGICAL MARKERS; BIOSTATISTICS; HEPATITIS B; HUMANS; INFECTION; IRELAND; LIKELIHOOD FUNCTIONS; LOGISTIC MODELS; MASS SCREENING; MODELS, STATISTICAL; PRISONERS; REGRESSION ANALYSIS;

EID: 84874850776     PISSN: 14654644     EISSN: 14684357     Source Type: Journal    
DOI: 10.1093/biostatistics/kxs045     Document Type: Article

References (31)

1. ALLWRIGHT, S., BRADLEY, F., LONG, J., BARRY, J., THORNTON, L. AND PARRY, J. (2000). Prevalence of antibodies to hepatitis B, hepatitis C, and HIV and risk factors in Irish prisoners: results of a national cross sectional survey. British Medical Journal 321, 78-82..
2. BUSCH, M., CAGLIOTI, S., ROBERTSON, E., MCAULEY, J., TOBLER, L., KAMEL, H., LINNEN, J., SHYAMALA, V., TOMASULO, P. AND KLEINMAN, S. (2005). Screening the blood supply for West Nile Virus RNA by nucleic acid amplification testing. New England Journal of Medicine 353, 460-467..
3. CARDOSO, M., KOERNER, K. AND KUBANEK, B. (1998). Mini-pool screening by nucleic acid testing for hepatitis B virus, hepatitis C virus, and HIV: preliminary results. Transfusion 38, 905-907..
4. CASELLA, G. AND BERGER, R. (2002). Statistical Inference, 2nd edition. Duxbury, MA: Duxbury Press..
5. CHEN, P., TEBBS, J. AND BILDER, C. (2009).Group testing regression models with fixed and random effects. Biometrics 65, 1270-1278..
6. CURRIE, M., MCNIVEN, M., YEE, T., SCHIEMER, U. AND BOWDEN, F. (2004). Pooling of clinical specimens prior to testing for Chlamydia trachomatis by PCR is accurate and cost saving. Journal of Clinical Microbiology 42, 4866-4867..
7. DELAIGLE, A. AND HALL, P. (2012). Nonparametric regression with homogeneous group testing data. Annals of Statistics 40, 131-158..
8. DELAIGLE, A. AND MEISTER, A. (2011). Nonparametric regression analysis for group testing data. Journal of the American Statistical Association 106, 640-650..
9. DORFMAN, R. (1943). The detection of defective members of large populations. Annals of Mathematical Statistics 14, 436-440..
10. FARRINGTON, C. (1992). Estimating prevalence by group testing using generalized linear models. Statistics inMedicine 11, 1591-1597..
11. GASTWIRTH, J. (2000). The efficiency of pooling in the detection of rare mutations. American Journal of Human Genetics 67, 1036-1039..
12. HUANG, X. (2009). An improved test of latent-variable modelmisspecification in structuralmeasurement error models for group testing data. Statistics in Medicine 28, 3316-3327..
13. HUNG, M. AND SWALLOW, W. (1999). Robustness of group testing in the estimation of proportions. Biometrics 55, 231-237..
14. KIM, H., HUDGENS, M., DREYFUSS, J., WESTREICH, D. AND PILCHER, C. (2007). Comparison of group testing algorithms for case identification in the presence of testing error. Biometrics 63, 1152-1163..
15. LEWIS, J., LOCKARY, V. AND KOBIC, S. (2012). Cost savings and increased efficiency using a stratified specimen pooling strategy for Chlamydia trachomatis and Neisseria gonorrhoeae. Sexually Transmitted Diseases 39, 46-48..
16. MALINOVSKY, Y., ALBERT, P. AND SCHISTERMAN, E. (2012). Pooling designs for outcomes under a Gaussian random effects model. Biometrics 68, 45-52..
17. MCMAHAN, C., TEBBS, J. AND BILDER, C. (2012). Informative Dorfman screening. Biometrics 68, 287-296..
18. PILCHER, C., FISCUS, S., NGUYEN, T., FOUST, E., WOLF, L., WILLIAMS, D., ASHBY, R., O'DOWD, J., MCPHERSON, J., STALZER, B., HIGHTOW, L., MILLER, W., and others (2005). Detection of acute infections during HIV testing in North Carolina. New England Journal of Medicine 352, 1873-1883..
19. REMLINGER, K., HUGHES-OLIVER, J., YOUNG, S. AND LAM, R. (2006). Statistical design of pools using optimal coverage and minimal collision. Technometrics 48, 133-143..
20. SCHISTERMAN, E., PERKINS, N., LIU, A. AND BONDELL, H. (2005). Optimal cut-point and its corresponding Youden index to discriminate individuals using pooled blood samples. Epidemiology 16, 73-81..
21. SCHMIDT, M., ROTH, W., MEYER, H., SEIFRIED, E. AND HOURFAR, M. (2005). Nucleic acid test screening of blood donors for orthopoxviruses can potentially prevent dispersion of viral agents in case of bioterrorism. Transfusion 45, 399-403..
22. TU, X., LITVAK, E. AND PAGANO, M. (1994). Screening tests: Can we get more by doing less? Statistics in Medicine 13, 1905-1919..
23. VAN, T., MILLER, J., WARSHAUER, D., REISDORF, E., JERRIGAN, D., HUMES, R. AND SHULT, P. (2012). Pooling nasopharyngeal/throat swab speciments to increase testing capacity for influenza viruses by PCR. Journal of Clinical Microbiology 50, 891-896..
24. VANSTEELANDT, S., GOETGHEBEUR, E., THOMAS, I., MATHYS, E. AND VAN LOOCK, F. (2005). On the viral safety of plasma pools and plasma derivatives. Journal of the Royal Statistical Society: Series A 168, 345-363..
25. VANSTEELANDT, S., GOETGHEBEUR, E. AND VERSTRAETEN, T. (2000). Regression models for disease prevalence with diagnostic tests on pools of serum samples. Biometrics 56, 1126-1133..
26. VEXLER, A., SCHISTERMAN, E. AND LIU, A. (2008). Estimation of ROC curves based on stably distributed biomarkers subject to measurement error and pooling mixtures. Statistics in Medicine 27, 280-296..
27. WANG, Y. (1993). On the number of successes in independent trials. Statistica Sinica 3, 295-312..
28. WANG, X. AND WANG, B. (2011). Deconvolution estimation in measurement error models: the R package decon. Journal of Statistical Software 39, 1-24..
29. WEIN, L. AND ZENIOS, S. (1996). Pooled testing for HIV screening: capturing the dilution effect. Operations Research 44, 543-569..
30. XIE, M. (2001). Regression analysis of group testing samples. Statistics in Medicine 20, 1957-1969..
31. ZENIOS, S. ANDWEIN, L. (1998). Pooled testing for HIV prevalence estimation: exploiting the dilution effect. Statistics in Medicine 17, 1447-1467..