Haplotype analysis of molecular markers linked to stem rust resistance genes in Ethiopian improved durum wheat varieties and tetraploid wheat landraces

Genetic Resources and Crop Evolution

Volumn 60, Issue 3, 2013, Pages 853-864

  Haile, Jemanesh K ^a   Hammer, Karl ^b   Badebo, Ayele ^c   Singh, Ravi P ^d   Röder, Marion S ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b UNIVERSITY OF KASSEL   (Germany)

^c ETHIOPIAN INSTITUTE OF AGRICULTURAL RESEARCH   (Ethiopia)

^d INTERNATIONAL MAIZE AND WHEAT IMPROVEMENT CENTER CIMMYT   (Mexico)

Author keywords

Diagnostic molecular markers; Haplotype; Sr gene; Stem rust; Tetraploid wheats

Indexed keywords

DISEASE RESISTANCE; FUNGAL DISEASE; GENETIC ANALYSIS; GENETIC MARKER; GENOTYPE; HIGH YIELDING VARIETY; MOLECULAR ANALYSIS; POLYPLOIDY; REPRODUCTIVE BEHAVIOR; WHEAT;

ETHIOPIA;

PUCCINIA GRAMINIS F. SP. TRITICI; TRITICUM AESTIVUM; TRITICUM TURGIDUM; TRITICUM TURGIDUM SUBSP. DURUM; TRITICUM TURGIDUM SUBSP. POLONICUM;

EID: 84874797184     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-012-9880-0     Document Type: Article

References (61)

1. Admassu B (2010) Genetic and virulence diversity of Puccinia graminis f. sp. tritici populations in Ethiopia and stem rust resistance genes in wheat. Ph. D. thesis, Giessen University, Cuvillier Verlag Göttingen, Germany.
2. Admassu B, Embet F, Zerihun K (2004) Physiological races and virulence diversity of Puccinia graminis f. sp. tritici on wheat in Ethiopia. In: 12th regional wheat workshop for Eastern, Central, and Southern Africa, Nakuru, Kenya, 22-26 November 2004, pp 145-150.
3. Admassu B, Lind V, Friedt W, Ordon F (2009) Virulence analysis of Puccinia graminis f. sp. tritici populations in Ethiopia with special consideration of Ug99. Plant Pathol 58: 362-369.
4. Admassu B, Perovic D, Friedt W, Ordon F (2011) Genetic mapping of the stem rust (Puccinia graminis f. sp. tritici Eriks. & E. Henn) resistance gene Sr13 in wheat (Triticum aestivum L.). Theor Appl Genet 122: 643-648.
5. Babiker E, Ibrahim A, Yen Y, Stein J (2009) Identification of a microsatellite marker associated with stem rust resistance gene Sr35 in wheat. Aust J Crop Sci 3: 195-200.
6. Badebo A (2002) Breeding bread wheat with multiple disease resistance and high yield for the Ethiopian highlands: Broadening the genetic basis of yellow rust and tan spot resistance. Ph. D. thesis, Georg-August University, Gottingen, Germany.
7. Badebo A, Stubbs RW, van Ginkel M, Getinet G (1990) Identification of resistance genes to Puccinia striiformis in seedlings of Ethiopian and CIMMYT bread wheat varieties and lines. Neth J Plant Pathol 96: 199-210.
8. Bechere E, Kebede H, Belay G (2000) Durum wheat in Ethiopia: An old crop in an ancient land. Institute of Biodiversity Conservation and Research (IBCR), Addis Ababa, Ethiopia, p 68.
9. Beteselassie N, Fininsa C, Badebo A (2007) Sources of resistance to stem rust (Puccinia graminis f. sp. tritici) in Ethiopian tetraploid wheat accessions. Genet Resour Crop Evol 54: 337-343.
10. CIMMYT (2000)1998/1999 World wheat facts and trends. Global wheat research in a changing world, challenges and achievements. CIMMYT, Mexico.
11. CSA (2009) Central Statistical Agency, 2009/2010, agricultural sample survey, report on area and production of crops. Statistical bulletin 446, vol IV. Addis Ababa, Ethiopia, p 14.
12. Das BK, Saini A, Bhagwat SG, Jawali N (2006) Development of SCAR markers for identification of stem rust resistance gene Sr31 in the homozygous or heterozygous condition in bread wheat. Plant Breed 125: 544-549.
13. Dawit W (2008) Analysis of pathogen virulence and cultivar resistance to yellow rust, Puccinia striiformis f. sp. tritici, in Ethiopia. Ph. D. thesis, Martin-Luther-Universität Halle-Wittenberg, Germany.
14. Doyle JJ, Doyle JL (1990) A rapid total DNA preparation procedure for fresh plant tissue. Focus 12: 13-15.
15. FAOSTAT (2003) Crop protection compendium CD. CAB International, UK.
16. Forster BP, Ellis RP, Thomas WTB, Newton AC, Tuberosa RTD, El-Enein RA, Bahri MH, Ben Salem M (2000) The development and application of molecular markers for abiotic stress tolerance in barley. J Exp Biol 51: 19-27.
17. Gerechter-Amitai ZK, Wahl I, Vardi A, Zohary D (1971) Transfer of stem rust seedling resistance from wild diploid einkorn to tetraploid durum wheat by means of a triploid hybrid bridge. Euphytica 2: 281-285.
18. Haile JK, Nachit MM, Hammer K, Badebo A, Röder MS (2012a) QTL mapping of resistance to race Ug99 of Puccinia graminis f. sp. tritici in durum wheat (Triticum durum Desf.). Mol Breed. doi: 10. 1007/s11032-012-9734-7.
19. Haile JK, Hammer K, Badebo A, Nachit MM, Röder MS (2012b) Genetic diversity assessment of Ethiopian tetraploid wheat landraces and improved durum wheat varieties using microsatellites and markers linked with stem rust resistance. Genet Resour Crop Evol. doi: 10. 1007/s10722-012-9855-1.
20. Hare RA, McIntosh RA (1979) Genetics and cytogenetics studies of durable adult-plant resistance in 'Hope' and related cultivars to wheat rusts. Z Pflanzenzüchtung 83: 350-367.
21. Hayden MJ, Kuchel H, Chalmers KJ (2004) Sequence tagged microsatellites for the Xgwm533 locus provide new diagnostic markers to select for the presence of stem rust resistance genes Sr2 in bread wheat (Triticum aestivum L.). Theor Appl Genet 109: 1641-1647.
22. Hiebert CW, Fetch TG Jr, Zegeye T (2010) Genetics and mapping of stem rust resistance to Ug99 in the wheat cultivar Webster. Theor Appl Genet 121: 65-69.
23. Huang XQ, Hsam SLK, Zeller FJ (1997) Chromosomal locations of genes for resistance to powdery mildew in common wheat (Triticum aestivum L. em. Thell.). 4. Gene pm24 in Chinese landrace Chiyacao. Theor Appl Genet 95: 950-953.
24. Huerta-Espino J (1992) Analysis of wheat leaf and stem rust virulence on a worldwide basis. Ph. D. thesis, University of Minnesota, USA.
25. Jin Y, Singh RP, Ward RW, Wanyera R, Kinyua MG, Njau P, Fetch T Jr, Pretorius ZA, Yahyaoui A (2007) Characterization of seedling infection types and adult plant infection responses of monogenic Sr gene lines to race TTKS of Puccinia graminis f. sp. tritici. Plant Dis 91: 1096-1099.
26. Kerber ER, Dyck PL (1973) Inheritance of stem rust resistance transferred from diploid wheat (Triticum monococcum) to tetraploid and hexaploid wheat and chromosome location of the gene involved. Can J Genet Cytol 15: 397-409.
27. Khan R, Bariana H, Dholakia B, Naik S, Lagu M, Rathjen A, Bhavani S, Gupta V (2005) Molecular mapping of stem and leaf rust resistance in wheat. Theor Appl Genet 111: 846-850.
28. Klindworth D, Miller J, Jin Y, Xu SS (2007) Chromosomal locations of genes for stem rust resistance in monogenic lines derived from tetraploid wheat accession STS464. Crop Sci 47: 1441-1450.
29. Lakew B, Semeane Y, Alemayehu F, Genre H, Grando S, van Leur JAG, Ceccarelli S (1997) Exploiting the diversity of barley landraces in Ethiopia. Genet Resour Crop Evol 44: 109-116.
30. Leppik EE (1970) Gene centers of plants as a source of disease resistance. Annu Rev Phytopathol 8: 323-344.
31. Liu S, Yu L-X, Singh RP, Jin Y, Sorrells ME, Anderson JA (2010) Diagnostic and co-dominant PCR markers for wheat stem rust resistance genes Sr25 and Sr26. Theor Appl Genet 120: 691-697.
32. Mago R, Bariana HS, Dundas IS, Spielmeyer W, Lawrence GJ, Pryor AJ, Ellis JG (2005) Development of broadly useful PCR-markers for the wheat stem rust resistance genes Sr24 and Sr26. Theor Appl Genet 111: 496-504.
33. Mago R, Brown-Guedira G, Dreisigacker S, Breen J, Jin Y, Singh R, Appels R, Lagudah ES, Ellis J, Spielmeyer W (2011) An accurate DNA marker assay for stem rust resistance gene Sr2 in wheat. Theor Appl Genet 122: 735-744.
34. Masresha A (1996) Wheat rust races identified in virulence surveys in Ethiopia. In: Tanner DG, Payne TS, Abdalla OS (eds) The ninth wheat regional workshop for Eastern Central and Southern Africa. CIMMYT, Addis Ababa, Ethiopia.
35. McIntosh RA (1988) The role of specific genes in breeding for durable stem rust resistance in wheat and triticale. In: Simmonds NW, Rajaram S (eds) Breeding strategies for resistance to the rusts of wheat. CIMMYT, Mexico.
36. McIntosh RA, Dyck PL, The TT, Cusick J, Milne DL (1984) Cytogentical studies in wheat XIII: Sr35-a third gene from Triticum monococcum for resistance to Puccinia graministritici. Z Pflanzenzüchtung 92: 1-14.
37. McIntosh RA, Wellings CR, Park RF (1995) Wheat rusts: an atlas of resistance genes. CSIRO, Canberra.
38. McIntosh RA, Yamazaki Y, Devos KM, Dubcovsky J, Rogers WJ, Appels R (2003) Catalogue of gene symbols for wheat. In: Pogna NE, Romano M, Pogna A, Galterio G (eds) Proceedings of the 10th International Wheat Genetics Symposium, Paestum, Italy.
39. Mujeeb-Kati A, Rajarm S (2000) Transferring alien genes from related species and genera for wheat improvement. In: Citrus BC, Rajarm S, MacPherson Gomez H (eds) Bread wheat improvement and production. FAO, Rome.
40. Olivera PD, Rouse M, Badebo A, Abeyo B, Woldeab G, Wanyera W, Jin Y (2011) Races of Puccinia graminis f. sp. tritici in Ethiopia and Kenya. In: McIntosh RA (ed) Proceedings of the Borlaug Global Rust Initiative 2011 technical workshop, June 13-16, St. Paul, MN, USA, p 157.
41. Olson EL, Brown-Guedira G, Marshall D, Stack E, Bowden RL, Jin Y, Rouse M, Pumphrey MO (2010) Development of wheat lines having a small introgressed segment carrying stem rust resistance gene Sr22. Crop Sci 50: 1823-1830.
42. Peterson RF, Champbell AB, Hannah AE (1948) A diagrammatic scale for estimating rust intensity of leaves and stem of cereals. Can J Res (C) 26: 496-500.
43. Pretorius ZA, Singh RP, Wagoire WW, Payne TS (2000) Detection of virulence to wheat stem rust resistance gene Sr31 in Puccinia graminis f. sp. tritici in Uganda. Phytopathology 84: 203.
44. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149: 2007-2023.
45. Roelfs AP, Singh RP, Saari EE (1992) Rust diseases of wheat: concepts and methods of diseases management. CIMMYT, Mexico City.
46. Saal B, Wricke G (1999) Development of simple sequence repeat markers in rye (Seale cereale L.). Genome 42: 964-972.
47. Simons K, Abate Z, Chao S, Zhang W, Rouse M, Jin Y, Elias E, Dubcovsky J (2011) Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum ssp. durum L.). Theor Appl Genet 122: 649-658.
48. Singh RP, Hodson DP, Jin Y, Huerta-Espino J, Kinyua MG, Wanyera R, Njau P, Ward RW (2006) Current status, likely migration and strategies to mitigate the threat to wheat production from race Ug99 (TTKS) of stem rust pathogen. Perspect Agric Vet Sci Nutr Nat Resour 1: 1-13.
49. Singh RP, Hodson DP, Huerta-Espino J, Jin Y, Njau P, Wanyera R, Ward WR (2008) Will stem rust destroy the world's wheat crop? Adv Agron 98: 271-309.
50. Singh RP, Huerta-Espino J, Bhavani S, Singh D, Singh PK, Herrera-Foessel SA, Njau P, Wanyera R, Jin Y (2009) Breeding for minor gene-based resistance to stem rust of wheat. In: Proceedings of the Borlaug Global Rust Initiative, C. D. Obregon, Mexico.
51. Spielmeyer W, Sharp PJ, Lagudah ES (2003) Identification and validation of markers linked to broad-spectrum stem rust resistance gene Sr2 in wheat (Triticum aestivum L.). Crop Sci 43: 333-336.
52. Sunderlund SD, Roelfs AP (1980) Greenhouse evaluation of the adult plant resistance of Sr2 to wheat stem rust. Phytopathology 70: 634-637.
53. Teklu Y, Hammer K (2009) Diversity of Ethiopian wheat germplasm: breeding opportunities for improving grain yield potentials and quality traits. Plant Genet Resour 7: 1-8.
54. Temam H (1984) Distribution and prevalence of physiologic races of Puccinia graminis f. sp. tritici in some parts of Ethiopia and reaction of wheat cultivars to these races. M. Sc. thesis, Addis Ababa University, Ethiopia.
55. Tsilo TJ, Jin Y, James A, Anderson JA (2008) Diagnostic microsatellite markers for the detection of stem rust resistance gene Sr36 in diverse genetic backgrounds of wheat. Crop Sci 48: 253-261.
56. Vanzetti LS, Campos P, Demichelis M, Lombardo LA, Aurelia PR, Vaschetto LM, Bainotti CT, Helguera M (2011) Identification of leaf rust resistance genes in selected Argentinean bread wheat cultivars by gene postulation and molecular markers. Electron J Biotechnol 14(3). http://dx. doi. org/10. 2225/vol14-issue3-fulltext-14.
57. Vavilov NI (1929) Wheats of Ethiopia. Bull Appl Bot Genet Plant Breed 20: 324-356.
58. Wu S, Pumphrey M, Bai G (2009) Molecular mapping of stem rust-resistance gene Sr40 in wheat. Crop Sci 49: 1682-1686.
59. Yu LX, Liu S, Anderson JA, Singh RP, Jin Y, Dubcovsky J, Guidera GB, Bhavani S, Morgounov A, He Z, Huerta-Espino J, Sorrells ME (2010) Haplotype diversity of stem rust resistance loci in uncharacterized wheat lines. Mol Breed 26: 667-680.
60. Yu LX, Lorenz A, Rutkoski J, Singh RP, Bhavani S, Huerta-Espino J, Sorrells ME (2011) Association mapping and gene-gene interaction for stem rust resistance in CIMMYT spring wheat germplasm. Theor Appl Genet 123: 1257-1268.
61. Zhang W, Olson E, Saintenac C, Rouse M, Abate Z, Jin Y, Akhunov E, Pumphrey M, Dubcovsky J (2010) Genetic maps of stem rust resistance gene Sr35 in diploid and hexaploid wheat. Crop Sci 50: 2464-2474.