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Volumn 29, Issue 5, 2013, Pages 658-660

CePa: An R package for finding significant pathways weighted by multiple network centralities

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK;

EID: 84874720474     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt008     Document Type: Article
Times cited : (53)

References (10)
  • 1
    • 63449107173 scopus 로고    scopus 로고
    • A general modular framework for gene set enrichment analysis
    • Ackermann, M. and Strimmer, K. (2009) A general modular framework for gene set enrichment analysis. BMC Bioinformatics, 10, 47.
    • (2009) BMC Bioinformatics , vol.10 , pp. 47
    • Ackermann, M.1    Strimmer, K.2
  • 2
    • 34547483895 scopus 로고    scopus 로고
    • Improving gene set analysis of microarray data by SAM-G S
    • Dinu, I. et al. (2007) Improving gene set analysis of microarray data by SAM-G S. BMC Bioinformatics, 8, 242.
    • (2007) BMC Bioinformatics , vol.8 , pp. 242
    • Dinu, I.1
  • 4
    • 35348890683 scopus 로고    scopus 로고
    • On testing the significance of sets of genes
    • Efron, B. and Tibshirani, R. (2007) On testing the significance of sets of genes. Ann. Appl. Stat., 1, 107-129.
    • (2007) Ann. Appl. Stat. , vol.1 , pp. 107-129
    • Efron, B.1    Tibshirani, R.2
  • 5
    • 77952866079 scopus 로고    scopus 로고
    • TopoGSA: Network topological gene set analysis
    • Glaab, E. et al. (2010) TopoGSA: network topological gene set analysis. Bioinformatics, 26, 1271-1272.
    • (2010) Bioinformatics , vol.26 , pp. 1271-1272
    • Glaab, E.1
  • 6
    • 84861804088 scopus 로고    scopus 로고
    • Centrality-based pathway enrichment: A systematic approach for finding significant pathways dominated by key genes
    • Gu, Z. et al. (2012) Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes. BMC Syst. Biol., 6, 56.
    • (2012) BMC Syst. Biol. , vol.6 , pp. 56
    • Gu, Z.1
  • 7
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W. et al. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1
  • 8
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • DOI 10.1093/bioinformatics/bti565
    • Khatri, P. and Draghici, S. (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics, 21, 3587-3595. (Pubitemid 41264092)
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3587-3595
    • Khatri, P.1    Draghici, S.2
  • 9
    • 77956548953 scopus 로고    scopus 로고
    • Cytoscape Web: An interactive web-based network browser
    • Lopes, C. T. et al. (2010) Cytoscape Web: an interactive web-based network browser. Bioinformatics, 26, 2347-2348.
    • (2010) Bioinformatics , vol.26 , pp. 2347-2348
    • Lopes, C.T.1
  • 10
    • 58149186477 scopus 로고    scopus 로고
    • PID: The pathway interaction database
    • Schaefer, C. F. et al. (2009) PID: the pathway interaction database. Nucleic Acids Res., 37, D674-D679.
    • (2009) Nucleic Acids Res. , vol.37
    • Schaefer, C.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.