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Volumn 29, Issue 5, 2013, Pages 551-560

Bellman's GAP - A language and compiler for dynamic programming in sequence analysis

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER LANGUAGE; METHODOLOGY; RNA FOLDING; SEQUENCE ANALYSIS;

EID: 84874719339     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt022     Document Type: Article
Times cited : (19)

References (20)
  • 1
    • 65449132018 scopus 로고    scopus 로고
    • Alignment of minisatellite maps based on run-length encoding scheme
    • Abouelhoda, M. I. et al. (2009) Alignment of minisatellite maps based on run-length encoding scheme. J. Bioinform. Comput. Biol., 7, 287-308.
    • (2009) J. Bioinform. Comput. Biol. , vol.7 , pp. 287-308
    • Abouelhoda, M.I.1
  • 2
    • 0003516147 scopus 로고    scopus 로고
    • Cambridge University Press, Cambridge, MA
    • Durbin, R. et al. (1998) Biological Sequence Analysis. Cambridge University Press, Cambridge, M A.
    • (1998) Biological Sequence Analysis
    • Durbin, R.1
  • 4
    • 33751009251 scopus 로고    scopus 로고
    • Challenges in the compilation of a domain specific language for dynamic programming
    • Haddad, H. (ed.). ACM, New York
    • Giegerich, R. and Steffen, P. (2006) Challenges in the compilation of a domain specific language for dynamic programming. In: Haddad, H. (ed.) Proceedings of the 2006 ACM Symposium on Applied Computing. ACM, New York.
    • (2006) Proceedings of the 2006 ACM Symposium on Applied Computing
    • Giegerich, R.1    Steffen, P.2
  • 5
    • 2442604484 scopus 로고    scopus 로고
    • A discipline of dynamic programming over sequence data
    • Giegerich, R. et al. (2004) A discipline of dynamic programming over sequence data. Sci. Comput. Program., 51, 215-263.
    • (2004) Sci. Comput. Program. , vol.51 , pp. 215-263
    • Giegerich, R.1
  • 6
    • 84869801123 scopus 로고    scopus 로고
    • Abstract folding space analysis based on helices
    • Huang, J. et al. (2012) Abstract folding space analysis based on helices. RNA, 18, 2135-2147.
    • (2012) RNA , vol.18 , pp. 2135-2147
    • Huang, J.1
  • 7
    • 80155214025 scopus 로고    scopus 로고
    • Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
    • Janssen, S. et al. (2011) Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics, 12, 429.
    • (2011) BMC Bioinformatics , vol.12 , pp. 429
    • Janssen, S.1
  • 10
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S. B. and Wunsch, C. D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 11
    • 0002213113 scopus 로고
    • Algorithms for loop matchings
    • Nussinov, R. et al. (1978) Algorithms for loop matchings. SIAM J. Appl. Math., 35, 68-82.
    • (1978) SIAM J. Appl. Math. , vol.35 , pp. 68-82
    • Nussinov, R.1
  • 12
    • 79251565226 scopus 로고    scopus 로고
    • Removing noise from pyrosequenced amplicons
    • Quince, C. et al. (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics, 12, 38.
    • (2011) BMC Bioinformatics , vol.12 , pp. 38
    • Quince, C.1
  • 13
    • 77956304094 scopus 로고    scopus 로고
    • Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
    • Reeder, J. and Knight, R. (2010) Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat. Methods, 7, 668-669.
    • (2010) Nat. Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 14
    • 34547840236 scopus 로고    scopus 로고
    • Locomotif: From graphical motif description to RNA motif search
    • Reeder, J. et al. (2007) Locomotif: from graphical motif description to RNA motif search. Bioinformatics, 23, i392.
    • (2007) Bioinformatics , vol.23
    • Reeder, J.1
  • 15
    • 84055193377 scopus 로고    scopus 로고
    • Conservation and occurrence of trans-encoded srnas in the rhizobiales
    • Reinkensmeier, J. et al. (2011) Conservation and occurrence of trans-encoded srnas in the rhizobiales. Genes, 2, 925-956.
    • (2011) Genes , vol.2 , pp. 925-956
    • Reinkensmeier, J.1
  • 16
    • 84856001353 scopus 로고    scopus 로고
    • A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more
    • Rivas, E. et al. (2012) A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more. RNA, 18, 193-212.
    • (2012) RNA , vol.18 , pp. 193-212
    • Rivas, E.1
  • 19
    • 32544440797 scopus 로고    scopus 로고
    • RNAshapes: An integrated RNA analysis package based on abstract shapes
    • DOI 10.1093/bioinformatics/btk010
    • Steffen, P. et al. (2006) RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics, 22, 500-503. (Pubitemid 43231429)
    • (2006) Bioinformatics , vol.22 , Issue.4 , pp. 500-503
    • Steffen, P.1    Voss, B.2    Rehmsmeier, M.3    Reeder, J.4    Giegerich, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.