Mathematical modeling of photosynthetic electron transport chain considering spatial heterogeneity of the thylakoid membrane

Mathematical Biology and Bioinformatics

Volumn 7, Issue 2, 2012, Pages 508-528

  Makarov, S S ^a   Grachev, E A ^a   Antal, T K ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84874663356     PISSN: None     EISSN: 19946538     Source Type: Journal    
DOI: 10.17537/2012.7.508     Document Type: Article

References (39)

1. Govindje E. Sixty-three years since Kautsky: Chlorophyll a Fluorescence. Australian Journal of Plant Physiology. 1995. V. 22. P. 131-160.
2. Strasser R.J., Srivastava A., Govindjee. Polyphasic chlorophyll a fluorescence transient in plants and cyanobacteria. Photochemistry and Photobiology. 1995. V. 61. P. 32-42.
3. Lazar D. Chlorophyll a fluorescence rise induced by high light illumination of dark-adapted plant tissue studied by means of a model of photosystem II and considering photosystem II heterogeneity. Journal of Theoretical Biology. 2003. V. 220. P. 469-503.
4. Vernotte C., Etienne A.L., Briantais J.M. Quenching of the system II chlorophyll fluorescence by the plastoquinone pool. Biochimica et Biophysica Acta. 1979. V. 545. P. 519-527.
5. Stirbet A., Govindjee, Strasser B.J., Strasser R. Chlorophyll a fluorescence induction in higher plants: modelling and numerical simulation. Journal of Theoretical Biology. 1998. V. 193. P. 131-151.
6. Riznichenko G.Yu., Lebedeva G.V., Demin O.V., Rubin A.B. Kinetic mechanisms of biological regulation in photosynthetic organisms. Journal of Biological Physics. 1999. V. 25. P. 177-192.
7. Lebedeva G.V., Belyaeva N.E., Demin O.V., Riznichenko G.Yu., Rubin A.B. Kinetic model of primary photosynthetic processes in chloroplasts description of the fast phase of chlorophyll fluorescence induction under different light intensities. Biophysics. 2002. V. 47. P. 968-980.
8. Zhu X.-G., Govindjee, Baker N.R., DeSturler E., Ort D.R., Long S.P. Chlorophyll a fluorescence induction kinetics in leaves predicted from a model describing each discrete step of excitation energy and electron transfer associated with Photosystem II. Planta. 2005. V. 223. P. 114-133.
9. Jablonsky J., Lazar D. Evidence for intermediate S-States as initial phase in the process of oxygen-evolving complex oxidation. Biophysical Journal. 2008. V. 94. P. 2725-2736.
10. Riznichenko G.Yu., Belyaeva N.E., Kovalenko I.B., Rubin A.B. Mathematical and computer modeling of primary photosynthetic processes. Biophysics. 2009. V. 54. P. 10-22.
11. Belyaeva N.E., Schmitt B.-J., Paschenko V.Z., Riznichenko G.Yu., Rubin A.B., Renger G. PS II model based analysis of transient fluorescence yield measured on whole leaves of Arabidopsis thaliana after excitation with light flashes of different energies. BioSystems. 2011. V. 103. P. 188-195.
12. Schansker G., Toth S.Z., Strasser R.J. Methylviologen and dibromothymoquinone treatments of pea leaves reveal the role of photosystem I in the Chl a fluorescence rise OJIP. Biochimica et Biophysica Acta. 2005. V. 1706. P. 250-261.
13. Antal T., Rubin A. In vivo analysis of chlorophyll a fluorescence induction. Photosynthesis Research. 2008. V. 96. No. 3. P. 217-226.
14. Schansker G., Tóth S.Z., Strasser R.J. Dark recovery of the Chl a fluorescence transient (OJIP) after light adaptation: The qT-component of non-photochemical quenching is related to an activated photosystem I acceptor side. Biochimica et Biophysica Acta. 2006. V. 1757. P. 787-797.
15. Talts E., Oja V., Rämma H., Rasulov B., Anijalg A., Laisk A. Dark inactivation of ferredoxin-NADP reductase and cyclic electron flow under far-red light in sunflower leaves. Photosynthesis Research. 2007. V. 94. P. 109-120.
16. Schansker G., Srivastava A., Govindjee, Strasser R.J. Characterization of the 820-nm transmission signal paralleling the chlorophyll a fluorescence rise (OJIP) in pea leaves. Functional Plant Biology. 2003. V. 30. P. 785-796.
17. Staehelin L.A. Chloroplast structure: from chlorophyll granules to supra-molecular architecture of thylakoid membranes. Photosynthesis Research. 2003. V. 76. P. 185-196.
18. Albertsson P.A. A quantitative model of the domain structure of the photosynthetic membrane. TRIENDS in Plant Science. 2001. V. 6. No. 8. P. 349-355.
19. Vershubskii A.V., Kuvykin I.V., Priklonskii V.I., Tikhonov A.N. Functional and topological aspects of pH-dependent regulation of electron and proton transport in chloroplasts in silico. BioSystems. 2011. V. 103. P. 164-179.
20. Shahak Y. Activation and deactivation of H+-ATPase in intact chloroplasts. Plant Physiology. 1982. V. 70. P. 87-91.
21. Cramer W.A., Zhang H., Yan J., Kurisu G. and Smith J.L. Trans-membrane traffic in the cytochrome b6f complex. Annual Review of Biochem. 2006. V. 75. P. 769-790.
22. Joliot P., Joliot A. Quantification of cyclic and linear flows in plants. Proceedings of the National Academy of Sciences of the United States of America. 2005. V. 102. P. 4913-4918.
23. Aoki M., Katoh S. Size of the Plastoquinone Pool Functioning in Photosynthetic and Respiratory Electron Transport of Synechococcus sp. Plant & Cell Physiology. 1983. V. 24. No. 8. P. 1379-1386.
24. Bohme H. Quantitative determination of ferredoxin. Ferredoxin-NADP-reductase and plastocyanin in spinach chloroplasts. European Journal of Biochemistry. 1978. V. 83. P. 137-141.
25. Mitchell R., Spillmann A., Haehnel W. Plastoquinol diffusion in linear photosynthetic electron transport. Biophysical Journal. 1990. V. 58. P. 1011-1024.
26. Sanderson D.G., Anderson L.B., Gross E.L. Determination of the redox potential and diffusion coefficient of the protein plastocyanin using optically transparent filar electrodes. Biochimica et Biophysica Acta. 1986. V. 852. P. 269-278.
27. Takano M., Takahashi M.-A., Asada K. Reduction of photosystem I reaction center, P-700, by plastocyanin in stroma thylakoids from spinach: lateral diffusion of plastocyanin. Archives of Biochemistry and Biophysics. 1982. V. 218. P. 369-375.
28. Nobel P.S. Physicochemical and environmental plant physiology. 2nd edition. San Diego: Academic Press, 2009. 540 p.
29. Hope A.B. Electron transfers amongst cytochrome f, plastocyanin and photosystem I: kinetics and mechanisms. Biochimica et Biophysica. 2002. V. 1456. P. 5-26.
30. Kovalenko I.B., Abaturova A.M., Riznichenko G.Yu., Rubin A.B. Computer simulation of interaction of photosystem 1 with plastocyanin and ferredoxin. BioSystems. 2011. V. 103. P. 180-187.
31. Kovalenko I.B., Diakonova A.M., Abaturova A.M., Riznichenko G.Yu., Rubin A.B. Direct computer simulation of ferredoxin and FNR complex formation in ssolution. Phys. Biol. 2010. V. 7. No. 2. P. 026001.
32. Trissl H.W., Lavergne J. Fluorescence induction from photosystem II - analytical equations for the yields of photochemistry and fluorescence derived from analysis of a model including exciton-radical pair equilibrium and restricted energytransfer between photosynthetic units. Australian Journal of Plant Physiology. 1995. V. 22. P. 183-193.
33. Lavergne J., Trissl H.W. Theory of fluorescence induction in photosystem II - derivation of analytical expressions in a model including exciton-radical-pair equilibrium and restricted energy transfer between photosynthetic units. Biophysical Journal. 1995. V. 68. P. 2474-2492.
34. Hoagland D.R., Arnon D.I. The water-culture method for growing plants without soil. California Agricultural Experiment Station Circular. 1950. V. 347. P. 1-32.
35. Antal T., Mattila H., Hakala-Yatkin M., Tyystjarvi T., Tyystjarvi E. Acclimation of photosynthesis to nitrogen deficiency in Phaseolus vulgaris. Planta. 2010. V. 232. No. 4. P. 887-898.
36. Rich P.R., Madwick S.A., Moss D.A. The interactions of duroquinol, DBMIB and NQNO with the chloroplast cytochrome bf complex. Biochimica et Biophysica Acta. 1991. V. 1058. P. 312.
37. Allen J.F. Induction of a Mehler reaction in chloroplast preparations by methyl viologen and by ferredoxin: effects on photosynthesis by intact chloroplasts. Plant Science Letters. 1978. V. 12. P. 161-167.
38. Bukhov N., Egorova E., Krendeleva T., Rubin A., Wiese C., Heber U. Relaxation of variable chlorophyll fluorescence after illumination of dark-adapted barley leaves as influenced by the redox states of electron carriers. Photosynthesis Research. 2001. V. 70. P. 155-166.
39. Rochaix J.-D. Reprint of: Regulation of photosynthetic electron transport. Biochimica et Biophysica Acta. 2011. V. 1807. P. 878-886.