메뉴 건너뛰기




Volumn 12, Issue 3, 2013, Pages 1419-1427

Hybrid feature detection and information accumulation using high-resolution LC-MS metabolomics data

Author keywords

bioinformatics; mass spectrometry; metabolomics

Indexed keywords

ALGORITHM; ARTICLE; FILTRATION; HYBRID; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLITE; METABOLOMICS; PRIORITY JOURNAL;

EID: 84874614277     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr301053d     Document Type: Article
Times cited : (74)

References (31)
  • 1
  • 3
    • 42449122308 scopus 로고    scopus 로고
    • Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes
    • Dunn, W. B. Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes Phys. Biol. 2008, 5 (1) 11001
    • (2008) Phys. Biol. , vol.5 , Issue.1 , pp. 11001
    • Dunn, W.B.1
  • 4
    • 33846981150 scopus 로고    scopus 로고
    • A metabolomics perspective of human brain tumours
    • Griffin, J. L.; Kauppinen, R. A. A metabolomics perspective of human brain tumours FEBS J. 2007, 274 (5) 1132-9
    • (2007) FEBS J. , vol.274 , Issue.5 , pp. 1132-1139
    • Griffin, J.L.1    Kauppinen, R.A.2
  • 5
    • 84987618255 scopus 로고    scopus 로고
    • Analyzing LC/MS metabolic profiling data in the context of existing metabolic networks
    • Yu, T.; Bai, Y. Analyzing LC/MS metabolic profiling data in the context of existing metabolic networks Curr. Metabolomics 2013, 1, 84-91
    • (2013) Curr. Metabolomics , vol.1 , pp. 84-91
    • Yu, T.1    Bai, Y.2
  • 6
    • 25444526868 scopus 로고    scopus 로고
    • Processing methods for differential analysis of LC/MS profile data
    • Katajamaa, M.; Oresic, M. Processing methods for differential analysis of LC/MS profile data BMC Bioinf. 2005, 6, 179
    • (2005) BMC Bioinf. , vol.6 , pp. 179
    • Katajamaa, M.1    Oresic, M.2
  • 7
    • 34347405493 scopus 로고    scopus 로고
    • Data processing for mass spectrometry-based metabolomics
    • Katajamaa, M.; Oresic, M. Data processing for mass spectrometry-based metabolomics J. Chromatogr., A 2007, 1158 (1-2) 318-28
    • (2007) J. Chromatogr., A , vol.1158 , Issue.1-2 , pp. 318-328
    • Katajamaa, M.1    Oresic, M.2
  • 8
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • Smith, C. A.; Want, E. J.; O'Maille, G.; Abagyan, R.; Siuzdak, G. XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification Anal. Chem. 2006, 78 (3) 779-87
    • (2006) Anal. Chem. , vol.78 , Issue.3 , pp. 779-787
    • Smith, C.A.1    Want, E.J.2    O'Maille, G.3    Abagyan, R.4    Siuzdak, G.5
  • 9
    • 67650733222 scopus 로고    scopus 로고
    • ApLCMS - Adaptive processing of high-resolution LC/MS data
    • Yu, T.; Park, Y.; Johnson, J. M.; Jones, D. P. apLCMS-adaptive processing of high-resolution LC/MS data Bioinformatics 2009, 25 (15) 1930-6
    • (2009) Bioinformatics , vol.25 , Issue.15 , pp. 1930-1936
    • Yu, T.1    Park, Y.2    Johnson, J.M.3    Jones, D.P.4
  • 11
    • 10744233766 scopus 로고    scopus 로고
    • Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
    • Wang, W.; Zhou, H.; Lin, H.; Roy, S.; Shaler, T. A.; Hill, L. R.; Norton, S.; Kumar, P.; Anderle, M.; Becker, C. H. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards Anal. Chem. 2003, 75 (18) 4818-26
    • (2003) Anal. Chem. , vol.75 , Issue.18 , pp. 4818-4826
    • Wang, W.1    Zhou, H.2    Lin, H.3    Roy, S.4    Shaler, T.A.5    Hill, L.R.6    Norton, S.7    Kumar, P.8    Anderle, M.9    Becker, C.H.10
  • 12
    • 34347408015 scopus 로고    scopus 로고
    • Chemometric analysis of complex hyphenated data. Improvements of the component detection algorithm
    • Windig, W.; Smith, W. F. Chemometric analysis of complex hyphenated data. Improvements of the component detection algorithm J. Chromatogr., A 2007, 1158 (1-2) 251-7
    • (2007) J. Chromatogr., A , vol.1158 , Issue.1-2 , pp. 251-257
    • Windig, W.1    Smith, W.F.2
  • 13
    • 0141593748 scopus 로고    scopus 로고
    • Screening of biomarkers in rat urine using LC/electrospray ionization-MS and two-way data analysis
    • Idborg-Bjorkman, H.; Edlund, P. O.; Kvalheim, O. M.; Schuppe-Koistinen, I.; Jacobsson, S. P. Screening of biomarkers in rat urine using LC/electrospray ionization-MS and two-way data analysis Anal. Chem. 2003, 75 (18) 4784-92
    • (2003) Anal. Chem. , vol.75 , Issue.18 , pp. 4784-4792
    • Idborg-Bjorkman, H.1    Edlund, P.O.2    Kvalheim, O.M.3    Schuppe-Koistinen, I.4    Jacobsson, S.P.5
  • 14
    • 33644867564 scopus 로고    scopus 로고
    • MZmine: Toolbox for processing and visualization of mass spectrometry based molecular profile data
    • Katajamaa, M.; Miettinen, J.; Oresic, M. MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data Bioinformatics 2006, 22 (5) 634-6
    • (2006) Bioinformatics , vol.22 , Issue.5 , pp. 634-636
    • Katajamaa, M.1    Miettinen, J.2    Oresic, M.3
  • 15
    • 0345168159 scopus 로고    scopus 로고
    • Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics
    • Tolstikov, V. V.; Lommen, A.; Nakanishi, K.; Tanaka, N.; Fiehn, O. Monolithic silica-based capillary reversed-phase liquid chromatography/ electrospray mass spectrometry for plant metabolomics Anal. Chem. 2003, 75 (23) 6737-40
    • (2003) Anal. Chem. , vol.75 , Issue.23 , pp. 6737-6740
    • Tolstikov, V.V.1    Lommen, A.2    Nakanishi, K.3    Tanaka, N.4    Fiehn, O.5
  • 17
    • 0036008574 scopus 로고    scopus 로고
    • New algorithms for processing and peak detection in liquid chromatography/mass spectrometry data
    • Hastings, C. A.; Norton, S. M.; Roy, S. New algorithms for processing and peak detection in liquid chromatography/mass spectrometry data Rapid Commun. Mass Spectrom. 2002, 16 (5) 462-7
    • (2002) Rapid Commun. Mass Spectrom. , vol.16 , Issue.5 , pp. 462-467
    • Hastings, C.A.1    Norton, S.M.2    Roy, S.3
  • 18
    • 42649135838 scopus 로고    scopus 로고
    • Feature detection and alignment of hyphenated chromatographic-mass spectrometric data. Extraction of pure ion chromatograms using Kalman tracking
    • Aberg, K. M.; Torgrip, R. J.; Kolmert, J.; Schuppe-Koistinen, I.; Lindberg, J. Feature detection and alignment of hyphenated chromatographic-mass spectrometric data. Extraction of pure ion chromatograms using Kalman tracking J. Chromatogr., A 2008, 1192 (1) 139-46
    • (2008) J. Chromatogr., A , vol.1192 , Issue.1 , pp. 139-146
    • Aberg, K.M.1    Torgrip, R.J.2    Kolmert, J.3    Schuppe-Koistinen, I.4    Lindberg, J.5
  • 20
    • 78649496840 scopus 로고    scopus 로고
    • Quantification and deconvolution of asymmetric LC-MS peaks using the bi-Gaussian mixture model and statistical model selection
    • Yu, T.; Peng, H. Quantification and deconvolution of asymmetric LC-MS peaks using the bi-Gaussian mixture model and statistical model selection BMC Bioinf. 2010, 11, 559
    • (2010) BMC Bioinf. , vol.11 , pp. 559
    • Yu, T.1    Peng, H.2
  • 21
    • 79959463553 scopus 로고    scopus 로고
    • AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS
    • Takahashi, H.; Morimoto, T.; Ogasawara, N.; Kanaya, S. AMDORAP: non-targeted metabolic profiling based on high-resolution LC-MS BMC Bioinf. 2011, 12, 259
    • (2011) BMC Bioinf. , vol.12 , pp. 259
    • Takahashi, H.1    Morimoto, T.2    Ogasawara, N.3    Kanaya, S.4
  • 22
    • 84862663723 scopus 로고    scopus 로고
    • An ultra-fast metabolite prediction algorithm
    • Yang, Z. R.; Grant, M. An ultra-fast metabolite prediction algorithm PloS One 2012, 7 (6) e39158
    • (2012) PloS One , vol.7 , Issue.6
    • Yang, Z.R.1    Grant, M.2
  • 23
    • 79954519624 scopus 로고    scopus 로고
    • Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets
    • Brown, M.; Wedge, D. C.; Goodacre, R.; Kell, D. B.; Baker, P. N.; Kenny, L. C.; Mamas, M. A.; Neyses, L.; Dunn, W. B. Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets Bioinformatics 2011, 27 (8) 1108-12
    • (2011) Bioinformatics , vol.27 , Issue.8 , pp. 1108-1112
    • Brown, M.1    Wedge, D.C.2    Goodacre, R.3    Kell, D.B.4    Baker, P.N.5    Kenny, L.C.6    Mamas, M.A.7    Neyses, L.8    Dunn, W.B.9
  • 24
    • 84855402302 scopus 로고    scopus 로고
    • CAMERA: An integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets
    • Kuhl, C.; Tautenhahn, R.; Bottcher, C.; Larson, T. R.; Neumann, S. CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets Anal. Chem. 2012, 84 (1) 283-9
    • (2012) Anal. Chem. , vol.84 , Issue.1 , pp. 283-389
    • Kuhl, C.1    Tautenhahn, R.2    Bottcher, C.3    Larson, T.R.4    Neumann, S.5
  • 25
    • 85008390292 scopus 로고    scopus 로고
    • Ion annotation-assisted analysis of LC-MS based metabolomic experiment
    • Varghese, R. S.; Zhou, B.; Nezami Ranjbar, M. R.; Zhao, Y.; Ressom, H. W. Ion annotation-assisted analysis of LC-MS based metabolomic experiment Proteome Sci. 2012, 10 (Suppl 1) S8
    • (2012) Proteome Sci. , vol.10 , Issue.SUPPL 1 , pp. 8
    • Varghese, R.S.1    Zhou, B.2    Nezami Ranjbar, M.R.3    Zhao, Y.4    Ressom, H.W.5
  • 28
    • 84864223921 scopus 로고    scopus 로고
    • Nutritional metabolomics: Progress in addressing complexity in diet and health
    • Jones, D. P.; Park, Y.; Ziegler, T. R. Nutritional metabolomics: progress in addressing complexity in diet and health Annu. Rev. Nutr. 2012, 32, 183-202
    • (2012) Annu. Rev. Nutr. , vol.32 , pp. 183-202
    • Jones, D.P.1    Park, Y.2    Ziegler, T.R.3
  • 30
    • 77958042220 scopus 로고    scopus 로고
    • A practical approach to detect unique metabolic patterns for personalized medicine
    • Johnson, J. M.; Yu, T.; Strobel, F. H.; Jones, D. P. A practical approach to detect unique metabolic patterns for personalized medicine Analyst 2010, 135 (11) 2864-70
    • (2010) Analyst , vol.135 , Issue.11 , pp. 2864-2870
    • Johnson, J.M.1    Yu, T.2    Strobel, F.H.3    Jones, D.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.