-
1
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
PMID:11448770
-
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, et al. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 2001; 11:941-50; PMID:11448770; http://dx.doi.org/10.1016/S0960- 9822(01)00270-6.
-
(2001)
Curr Biol
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
Margalit, H.6
-
2
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
PMID:11445539
-
Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 2001; 15:1637-51; PMID:11445539; http://dx.doi.org/10.1101/gad.901001.
-
(2001)
Genes Dev
, vol.15
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
3
-
-
60149089144
-
Regulatory RNAs in bacteria
-
PMID:19239884
-
Waters LS, Storz G. Regulatory RNAs in bacteria. Cell 2009; 136:615-28; PMID:19239884; http://dx.doi.org/10.1016/j.cell.2009.01.043.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
5
-
-
33751202938
-
Small non-coding RNAs and the bacterial outer membrane
-
PMID:17055775
-
Vogel J, Papenfort K. Small non-coding RNAs and the bacterial outer membrane. Curr Opin Microbiol 2006; 9:605-11; PMID:17055775; http://dx.doi. org/10.1016/j.mib.2006.10.006.
-
(2006)
Curr Opin Microbiol
, vol.9
, pp. 605-611
-
-
Vogel, J.1
Papenfort, K.2
-
6
-
-
33748257975
-
Modulating the outer membrane with small RNAs
-
PMID:16951250
-
Guillier M, Gottesman S, Storz G. Modulating the outer membrane with small RNAs. Genes Dev 2006; 20:2338-48; PMID:16951250; http://dx.doi. org/10.1101/gad.1457506.
-
(2006)
Genes Dev
, vol.20
, pp. 2338-2348
-
-
Guillier, M.1
Gottesman, S.2
Storz, G.3
-
7
-
-
84857409524
-
Salmonella biofilms: An overview on occurence, structure, regulation and eradication
-
Steenackers H, Hermans K, Vanderleyden J, De Keersmaecker S. Salmonella biofilms: An overview on occurence, structure, regulation and eradication. Food Res Int 2012; 45:502-31; http://dx.doi. org/10.1016/j.foodres.2011.01.038.
-
(2012)
Food Res Int
, vol.45
, pp. 502-531
-
-
Steenackers, H.1
Hermans, K.2
Vanderleyden, J.3
De Keersmaecker, S.4
-
8
-
-
84862225191
-
Life-style control networks in Escherichia coli: Signaling by the second messenger c-di-GMP
-
PMID:22226726
-
Povolotsky TL, Hengge R. 'Life-style' control networks in Escherichia coli: signaling by the second messenger c-di-GMP. J Biotechnol 2012; 160:10-6; PMID:22226726; http://dx.doi.org/10.1016/j.jbiotec. 2011.12.024.
-
(2012)
J Biotechnol
, vol.160
, pp. 10-16
-
-
Povolotsky, T.L.1
Hengge, R.2
-
9
-
-
77958550234
-
The small regulatory RNA molecule MicA is involved in Salmonella enterica serovar Typhimurium biofilm formation
-
PMID:21044338
-
Kint G, De Coster D, Marchal K, Vanderleyden J, De Keersmaecker SCJ. The small regulatory RNA molecule MicA is involved in Salmonella enterica serovar Typhimurium biofilm formation. BMC Microbiol 2010; 10:276; PMID:21044338; http://dx.doi.org/10.1186/1471-2180-10-276.
-
(2010)
BMC Microbiol
, vol.10
, pp. 276
-
-
Kint, G.1
De Coster, D.2
Marchal, K.3
Vanderleyden, J.4
De Keersmaecker, S.C.J.5
-
10
-
-
84858865125
-
Hfq and Hfqdependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium
-
PMID:22336758
-
Monteiro C, Papenfort K, Hentrich K, Ahmad I, Le Guyon S, Reimann R, et al. Hfq and Hfqdependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium. RNA Biol 2012; 9:489-502; PMID:22336758; http://dx.doi.org/10.4161/rna.19682.
-
(2012)
RNA Biol
, vol.9
, pp. 489-502
-
-
Monteiro, C.1
Papenfort, K.2
Hentrich, K.3
Ahmad, I.4
Le Guyon, S.5
Reimann, R.6
-
11
-
-
78049365859
-
Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: Pairing increases translation and protects rpoS mRNA from degradation
-
PMID:20802038
-
McCullen CA, Benhammou JN, Majdalani N, Gottesman S. Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation. J Bacteriol 2010; 192:5559-71; PMID:20802038; http://dx.doi.org/10.1128/JB.00464-10.
-
(2010)
J Bacteriol
, vol.192
, pp. 5559-5571
-
-
McCullen, C.A.1
Benhammou, J.N.2
Majdalani, N.3
Gottesman, S.4
-
12
-
-
77951191945
-
MicA sRNA links the PhoP regulon to cell envelope stress
-
PMID:20345657
-
Coornaert A, Lu A, Mandin P, Springer M, Gottesman S, Guillier M. MicA sRNA links the PhoP regulon to cell envelope stress. Mol Microbiol 2010; 76:467-79; PMID:20345657; http://dx.doi. org/10.1111/j.1365-2958.2010.07115.x.
-
(2010)
Mol Microbiol
, vol.76
, pp. 467-479
-
-
Coornaert, A.1
Lu, A.2
Mandin, P.3
Springer, M.4
Gottesman, S.5
Guillier, M.6
-
13
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
PMID:22538806
-
Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, et al. The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci USA 2012; 109:E1277-86; PMID:22538806; http://dx.doi.org/10.1073/pnas.1201061109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Kröger, C.1
Dillon, S.C.2
Cameron, A.D.3
Papenfort, K.4
Sivasankaran, S.K.5
Hokamp, K.6
-
14
-
-
33751383274
-
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
-
PMID:17427289
-
Papenfort K, Pfeiffer V, Mika F, Lucchini S, Hinton JC, Vogel J. SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol 2006; 62:1674-88; PMID:17427289; http://dx.doi. org/10.1111/j.1365-2958.2006.05524.x.
-
(2006)
Mol Microbiol
, vol.62
, pp. 1674-1688
-
-
Papenfort, K.1
Pfeiffer, V.2
Mika, F.3
Lucchini, S.4
Hinton, J.C.5
Vogel, J.6
-
15
-
-
0035100582
-
Regulation of RpoS by a novel small RNA: The characterization of RprA
-
PMID:11251852
-
Majdalani N, Chen S, Murrow J, St John K, Gottesman S. Regulation of RpoS by a novel small RNA: the characterization of RprA. Mol Microbiol 2001; 39:1382-94; PMID:11251852; http://dx.doi. org/10.1111/j.1365-2958.2001.02329.x.
-
(2001)
Mol Microbiol
, vol.39
, pp. 1382-1394
-
-
Majdalani, N.1
Chen, S.2
Murrow, J.3
St John, K.4
Gottesman, S.5
-
16
-
-
77956879952
-
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA
-
PMID:20683441
-
Mandin P, Gottesman S. Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. EMBO J 2010; 29:3094-107; PMID:20683441; http://dx.doi.org/10.1038/emboj.2010.179.
-
(2010)
EMBO J
, vol.29
, pp. 3094-3107
-
-
Mandin, P.1
Gottesman, S.2
-
17
-
-
0032531904
-
The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein
-
PMID:9774349
-
Zhang A, Altuvia S, Tiwari A, Argaman L, Hengge-Aronis R, Storz G. The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein. EMBO J 1998; 17:6061-8; PMID:9774349; http://dx.doi.org/10.1093/emboj/17.20. 6061.
-
(1998)
EMBO J
, vol.17
, pp. 6061-6068
-
-
Zhang, A.1
Altuvia, S.2
Tiwari, A.3
Argaman, L.4
Hengge-Aronis, R.5
Storz, G.6
-
18
-
-
0032514739
-
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
-
PMID:9770508
-
Majdalani N, Cunning C, Sledjeski D, Elliott T, Gottesman S. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc Natl Acad Sci USA 1998; 95:12462-7; PMID:9770508; http://dx.doi.org/10.1073/pnas.95.21. 12462.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 12462-12467
-
-
Majdalani, N.1
Cunning, C.2
Sledjeski, D.3
Elliott, T.4
Gottesman, S.5
-
19
-
-
84858862917
-
Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli
-
PMID:22250746
-
Jørgensen MG, Nielsen JS, Boysen A, Franch T, Møller-Jensen J, Valentin-Hansen P. Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli. Mol Microbiol 2012; 84:36-50; PMID:22250746; http://dx.doi.org/10.1111/j.1365-2958.2012.07976.x.
-
(2012)
Mol Microbiol
, vol.84
, pp. 36-50
-
-
Jørgensen, M.G.1
Nielsen, J.S.2
Boysen, A.3
Franch, T.4
Møller-Jensen, J.5
Valentin-Hansen, P.6
-
20
-
-
84858866772
-
A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli
-
PMID:22289118
-
Thomason MK, Fontaine F, De Lay N, Storz G. A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. Mol Microbiol 2012; 84:17-35; PMID:22289118; http://dx.doi.org/10.1111/j.1365-2958.2012.07965.x.
-
(2012)
Mol Microbiol
, vol.84
, pp. 17-35
-
-
Thomason, M.K.1
Fontaine, F.2
De Lay, N.3
Storz, G.4
-
21
-
-
84858863122
-
Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli
-
PMID:22356413
-
Mika F, Busse S, Possling A, Berkholz J, Tschowri N, Sommerfeldt N, et al. Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli. Mol Microbiol 2012; 84:51-65; PMID:22356413; http://dx.doi.org/10.1111/j.1365-2958.2012.08002. x.
-
(2012)
Mol Microbiol
, vol.84
, pp. 51-65
-
-
Mika, F.1
Busse, S.2
Possling, A.3
Berkholz, J.4
Tschowri, N.5
Sommerfeldt, N.6
-
22
-
-
77953120292
-
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
-
PMID:20407422
-
Holmqvist E, Reimegård J, Sterk M, Grantcharova N, Römling U, Wagner EG. Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J 2010; 29:1840-50; PMID:20407422; http://dx.doi.org/10.1038/emboj.2010.73.
-
(2010)
EMBO J
, vol.29
, pp. 1840-1850
-
-
Holmqvist, E.1
Reimegård, J.2
Sterk, M.3
Grantcharova, N.4
Römling, U.5
Wagner, E.G.6
-
23
-
-
84868094684
-
A complex network of small non-coding RNAs regulate motility in Escherichia coli
-
PMID:22925049
-
De Lay N, Gottesman S. A complex network of small non-coding RNAs regulate motility in Escherichia coli. Mol Microbiol 2012; 86:524-38; PMID:22925049; http://dx.doi.org/10.1111/j.1365-2958.2012.08209.x.
-
(2012)
Mol Microbiol
, vol.86
, pp. 524-538
-
-
De Lay, N.1
Gottesman, S.2
-
24
-
-
0345714688
-
Comparative analysis of Salmonella enterica serovar Typhimurium biofilm formation on gallstones and on glass
-
PMID:14638807
-
Prouty AM, Gunn JS. Comparative analysis of Salmonella enterica serovar Typhimurium biofilm formation on gallstones and on glass. Infect Immun 2003; 71:7154-8; PMID:14638807; http://dx.doi. org/10.1128/IAI.71.12.7154-7158.2003.
-
(2003)
Infect Immun
, vol.71
, pp. 7154-7158
-
-
Prouty, A.M.1
Gunn, J.S.2
-
25
-
-
77954003190
-
Flagellated but not hyperfimbriated Salmonella enterica serovar Typhimurium attaches to and forms biofilms on cholesterol-coated surfaces
-
PMID:20118264
-
Crawford RW, Reeve KE, Gunn JS. Flagellated but not hyperfimbriated Salmonella enterica serovar Typhimurium attaches to and forms biofilms on cholesterol-coated surfaces. J Bacteriol 2010; 192:2981-90; PMID:20118264; http://dx.doi.org/10.1128/JB.01620-09.
-
(2010)
J Bacteriol
, vol.192
, pp. 2981-2990
-
-
Crawford, R.W.1
Reeve, K.E.2
Gunn, J.S.3
-
26
-
-
84858860817
-
A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
-
PMID:22180532
-
Fröhlich KS, Papenfort K, Berger AA, Vogel J. A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res 2012; 40:3623-40; PMID:22180532; http://dx.doi. org/10.1093/nar/ gkr1156.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3623-3640
-
-
Fröhlich, K.S.1
Papenfort, K.2
Berger, A.A.3
Vogel, J.4
-
27
-
-
2142806122
-
Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coli
-
PMID:2668953
-
Forst S, Delgado J, Inouye M. Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coli. Proc Natl Acad Sci USA 1989; 86:6052-6; PMID:2668953; http://dx.doi.org/10.1073/pnas. 86.16.6052.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 6052-6056
-
-
Forst, S.1
Delgado, J.2
Inouye, M.3
-
28
-
-
33645066654
-
Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs
-
PMID:16359331
-
Guillier M, Gottesman S. Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs. Mol Microbiol 2006; 59:231-47; PMID:16359331; http://dx.doi.org/10.1111/j.1365-2958.2005.04929.x.
-
(2006)
Mol Microbiol
, vol.59
, pp. 231-247
-
-
Guillier, M.1
Gottesman, S.2
-
29
-
-
33646072467
-
The Cpx system of Escherichia coli, a strategic signaling pathway for confronting adverse conditions and for settling biofilm communities?
-
PMID:16487683
-
Dorel C, Lejeune P, Rodrigue A. The Cpx system of Escherichia coli, a strategic signaling pathway for confronting adverse conditions and for settling biofilm communities? Res Microbiol 2006; 157:306-14; PMID:16487683; http://dx.doi.org/10.1016/j. resmic.2005.12.003.
-
(2006)
Res Microbiol
, vol.157
, pp. 306-314
-
-
Dorel, C.1
Lejeune, P.2
Rodrigue, A.3
-
30
-
-
25144451503
-
The Rcs phosphorelay: A complex signal transduction system
-
PMID:16153174
-
Majdalani N, Gottesman S. The Rcs phosphorelay: a complex signal transduction system. Annu Rev Microbiol 2005; 59:379-405; PMID:16153174; http://dx.doi.org/10.1146/annurev.micro.59.050405.101230.
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 379-405
-
-
Majdalani, N.1
Gottesman, S.2
-
31
-
-
47149096184
-
A genome-wide approach to identify the genes involved in biofilm formation in E. coli
-
PMID:18180259
-
Niba ET, Naka Y, Nagase M, Mori H, Kitakawa M. A genome-wide approach to identify the genes involved in biofilm formation in E. coli. DNA Res 2007; 14:237-46; PMID:18180259; http://dx.doi. org/10.1093/dnares/dsm024.
-
(2007)
DNA Res
, vol.14
, pp. 237-246
-
-
Niba, E.T.1
Naka, Y.2
Nagase, M.3
Mori, H.4
Kitakawa, M.5
-
32
-
-
70349684496
-
OmpA influences Escherichia coli biofilm formation by repressing cellulose production through the CpxRA two-component system
-
PMID:19601955
-
Ma Q, Wood TK. OmpA influences Escherichia coli biofilm formation by repressing cellulose production through the CpxRA two-component system. Environ Microbiol 2009; 11:2735-46; PMID:19601955; http://dx.doi.org/10.1111/j.1462- 2920.2009.02000.x.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2735-2746
-
-
Ma, Q.1
Wood, T.K.2
-
33
-
-
30944444979
-
Hha, YbaJ, and OmpA regulate Escherichia coli K12 biofilm formation and conjugation plasmids abolish motility
-
PMID:16317765
-
Barrios AFG, Zuo RJ, Ren DC, Wood TK. Hha, YbaJ, and OmpA regulate Escherichia coli K12 biofilm formation and conjugation plasmids abolish motility. Biotechnol Bioeng 2006; 93:188-200; PMID:16317765; http://dx.doi.org/10.1002/bit.20681.
-
(2006)
Biotechnol Bioeng
, vol.93
, pp. 188-200
-
-
Barrios, A.F.G.1
Zuo, R.J.2
Ren, D.C.3
Wood, T.K.4
-
34
-
-
0029589618
-
Mutational activation of the Cpx signal transduction pathway of Escherichia coli suppresses the toxicity conferred by certain envelope-associated stresses
-
PMID:8748033
-
Cosma CL, Danese PN, Carlson JH, Silhavy TJ, Snyder WB. Mutational activation of the Cpx signal transduction pathway of Escherichia coli suppresses the toxicity conferred by certain envelope-associated stresses. Mol Microbiol 1995; 18:491-505; PMID:8748033; http://dx.doi. org/10.1111/j.1365-2958.1995.mmi- 18030491.x.
-
(1995)
Mol Microbiol
, vol.18
, pp. 491-505
-
-
Cosma, C.L.1
Danese, P.N.2
Carlson, J.H.3
Silhavy, T.J.4
Snyder, W.B.5
-
35
-
-
84855363564
-
Regulation of biofilm components in Salmonella enterica serovar Typhimurium by lytic transglycosylases involved in cell wall turnover
-
PMID:21965572
-
Monteiro C, Fang X, Ahmad I, Gomelsky M, Römling U. Regulation of biofilm components in Salmonella enterica serovar Typhimurium by lytic transglycosylases involved in cell wall turnover. J Bacteriol 2011; 193:6443-51; PMID:21965572; http://dx.doi.org/10.1128/JB.00425-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 6443-6451
-
-
Monteiro, C.1
Fang, X.2
Ahmad, I.3
Gomelsky, M.4
Römling, U.5
-
36
-
-
84862786361
-
Outer membrane defect and stronger biofilm formation caused by inactivation of a gene encoding for heptosyltransferase i in Cronobacter sakazakii ATCC BAA-894
-
PMID:22353600
-
Wang L, Hu X, Tao G, Wang X. Outer membrane defect and stronger biofilm formation caused by inactivation of a gene encoding for heptosyltransferase I in Cronobacter sakazakii ATCC BAA-894. J Appl Microbiol 2012; 112:985-97; PMID:22353600; http://dx.doi.org/10.1111/j.1365-2672.2012.05263.x.
-
(2012)
J Appl Microbiol
, vol.112
, pp. 985-997
-
-
Wang, L.1
Hu, X.2
Tao, G.3
Wang, X.4
-
37
-
-
74549123301
-
The transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms
-
PMID:20003355
-
Hamilton S, Bongaerts RJ, Mulholland F, Cochrane B, Porter J, Lucchini S, et al. The transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms. BMC Genomics 2009; 10:599; PMID:20003355; http://dx.doi.org/10.1186/1471-2164-10-599.
-
(2009)
BMC Genomics
, vol.10
, pp. 599
-
-
Hamilton, S.1
Bongaerts, R.J.2
Mulholland, F.3
Cochrane, B.4
Porter, J.5
Lucchini, S.6
-
38
-
-
77955595291
-
A global metabolic shift is linked to Salmonella multicellular development
-
PMID:20676398
-
White AP, Weljie AM, Apel D, Zhang P, Shaykhutdinov R, Vogel HJ, et al. A global metabolic shift is linked to Salmonella multicellular development. PLoS One 2010; 5:e11814; PMID:20676398; http://dx.doi.org/10.1371/journal.pone. 0011814.
-
(2010)
PLoS One
, vol.5
-
-
White, A.P.1
Weljie, A.M.2
Apel, D.3
Zhang, P.4
Shaykhutdinov, R.5
Vogel, H.J.6
-
39
-
-
58149302653
-
AroA and aroD mutations influence biofilm formation in Salmonella Enteritidis
-
PMID:19054077
-
Malcova M, Karasova D, Rychlik I. aroA and aroD mutations influence biofilm formation in Salmonella Enteritidis. FEMS Microbiol Lett 2009; 291:44-9; PMID:19054077; http://dx.doi.org/10.1111/j.1574-6968.2008.01433.x.
-
(2009)
FEMS Microbiol Lett
, vol.291
, pp. 44-49
-
-
Malcova, M.1
Karasova, D.2
Rychlik, I.3
-
40
-
-
0036270804
-
Genetic analysis of Salmonella enteritidis biofilm formation: Critical role of cellulose
-
PMID:11929533
-
Solano C, García B, Valle J, Berasain C, Ghigo JM, Gamazo C, et al. Genetic analysis of Salmonella enteritidis biofilm formation: critical role of cellulose. Mol Microbiol 2002; 43:793-808; PMID:11929533; http://dx.doi.org/10.1046/j.1365-2958.2002.02802.x.
-
(2002)
Mol Microbiol
, vol.43
, pp. 793-808
-
-
Solano, C.1
García, B.2
Valle, J.3
Berasain, C.4
Ghigo, J.M.5
Gamazo, C.6
-
41
-
-
79251559383
-
The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli
-
PMID:21292161
-
Beisel CL, Storz G. The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli. Mol Cell 2011; 41:286-97; PMID:21292161; http://dx.doi.org/10.1016/j. molcel.2010.12.027.
-
(2011)
Mol Cell
, vol.41
, pp. 286-297
-
-
Beisel, C.L.1
Storz, G.2
-
42
-
-
79956005312
-
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes
-
PMID:21245045
-
Rice JB, Vanderpool CK. The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Res 2011; 39:3806-19; PMID:21245045; http://dx.doi. org/10.1093/nar/gkq1219.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3806-3819
-
-
Rice, J.B.1
Vanderpool, C.K.2
-
43
-
-
80051929071
-
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
-
PMID:21696468
-
Sharma CM, Papenfort K, Pernitzsch SR, Mollenkopf HJ, Hinton JC, Vogel J. Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol 2011; 81:1144-65; PMID:21696468; http://dx.doi.org/10.1111/j.1365-2958.2011.07751.x.
-
(2011)
Mol Microbiol
, vol.81
, pp. 1144-1165
-
-
Sharma, C.M.1
Papenfort, K.2
Pernitzsch, S.R.3
Mollenkopf, H.J.4
Hinton, J.C.5
Vogel, J.6
-
44
-
-
69749123311
-
Caught at its own game: Regulatory small RNA inactivated by an inducible transcript mimicking its target
-
PMID:19638370
-
Figueroa-Bossi N, Valentini M, Malleret L, Fiorini F, Bossi L. Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. Genes Dev 2009; 23:2004-15; PMID:19638370; http://dx.doi.org/10.1101/gad.541609.
-
(2009)
Genes Dev
, vol.23
, pp. 2004-2015
-
-
Figueroa-Bossi, N.1
Valentini, M.2
Malleret, L.3
Fiorini, F.4
Bossi, L.5
-
45
-
-
65349138237
-
A conserved small RNA promotes silencing of the outer membrane protein YbfM
-
PMID:19400782
-
Rasmussen AA, Johansen J, Nielsen JS, Overgaard M, Kallipolitis B, Valentin-Hansen P. A conserved small RNA promotes silencing of the outer membrane protein YbfM. Mol Microbiol 2009; 72:566-77; PMID:19400782; http://dx.doi.org/10.1111/j.1365-2958.2009.06688.x.
-
(2009)
Mol Microbiol
, vol.72
, pp. 566-577
-
-
Rasmussen, A.A.1
Johansen, J.2
Nielsen, J.S.3
Overgaard, M.4
Kallipolitis, B.5
Valentin-Hansen, P.6
-
46
-
-
58649085492
-
The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior
-
PMID:18978044
-
De Lay N, Gottesman S. The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior. J Bacteriol 2009; 191:461-76; PMID:18978044; http://dx.doi. org/10.1128/JB.01157-08.
-
(2009)
J Bacteriol
, vol.191
, pp. 461-476
-
-
De Lay, N.1
Gottesman, S.2
-
47
-
-
52049089226
-
Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP-CRP-and sigma(E)-Dependent CyaR-ompX Regulatory Case
-
Johansen J, Eriksen M, Kallipolitis B, Valentin-Hansen P. Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP-CRP-and sigma(E)-Dependent CyaR-ompX Regulatory Case. J Mol Microbiol 2008; 383:1-9.
-
(2008)
J Mol Microbiol
, vol.383
, pp. 1-9
-
-
Johansen, J.1
Eriksen, M.2
Kallipolitis, B.3
Valentin-Hansen, P.4
-
48
-
-
42549165769
-
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis
-
PMID:18399940
-
Papenfort K, Pfeiffer V, Lucchini S, Sonawane A, Hinton JC, Vogel J. Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis. Mol Microbiol 2008; 68:890-906; PMID:18399940; http://dx.doi.org/10.1111/j.1365-2958.2008.06189.x.
-
(2008)
Mol Microbiol
, vol.68
, pp. 890-906
-
-
Papenfort, K.1
Pfeiffer, V.2
Lucchini, S.3
Sonawane, A.4
Hinton, J.C.5
Vogel, J.6
-
49
-
-
36148969305
-
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
-
PMID:17971080
-
Pfeiffer V, Sittka A, Tomer R, Tedin K, Brinkmann V, Vogel J. A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol 2007; 66:1174-91; PMID:17971080; http://dx.doi.org/10.1111/j.1365-2958.2007.05991.x.
-
(2007)
Mol Microbiol
, vol.66
, pp. 1174-1191
-
-
Pfeiffer, V.1
Sittka, A.2
Tomer, R.3
Tedin, K.4
Brinkmann, V.5
Vogel, J.6
-
50
-
-
30744444985
-
Novel mechanism of Escherichia coli porin regulation
-
PMID:16385048
-
Castillo-Keller M, Vuong P, Misra R. Novel mechanism of Escherichia coli porin regulation. J Bacteriol 2006; 188:576-86; PMID:16385048; http://dx.doi. org/10.1128/JB.188.2.576-586.2006.
-
(2006)
J Bacteriol
, vol.188
, pp. 576-586
-
-
Castillo-Keller, M.1
Vuong, P.2
Misra, R.3
-
51
-
-
34447542213
-
A small RNA downregulates LamB maltoporin in Salmonella
-
PMID:17608792
-
Bossi L, Figueroa-Bossi N. A small RNA downregulates LamB maltoporin in Salmonella. Mol Microbiol 2007; 65:799-810; PMID:17608792; http://dx.doi. org/10.1111/j.1365-2958.2007.05829.x.
-
(2007)
Mol Microbiol
, vol.65
, pp. 799-810
-
-
Bossi, L.1
Figueroa-Bossi, N.2
-
52
-
-
28244471582
-
Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control
-
PMID:16313626
-
Rasmussen AA, Eriksen M, Gilany K, Udesen C, Franch T, Petersen C, et al. Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. Mol Microbiol 2005; 58:1421-9; PMID:16313626; http://dx.doi. org/10.1111/j.1365-2958.2005.04911.x.
-
(2005)
Mol Microbiol
, vol.58
, pp. 1421-1429
-
-
Rasmussen, A.A.1
Eriksen, M.2
Gilany, K.3
Udesen, C.4
Franch, T.5
Petersen, C.6
-
53
-
-
25844458478
-
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA
-
PMID:16204185
-
Udekwu KI, Darfeuille F, Vogel J, Reimegård J, Holmqvist E, Wagner EG. Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev 2005; 19:2355-66; PMID:16204185; http://dx.doi.org/10.1101/gad.354405.
-
(2005)
Genes Dev
, vol.19
, pp. 2355-2366
-
-
Udekwu, K.I.1
Darfeuille, F.2
Vogel, J.3
Reimegård, J.4
Holmqvist, E.5
Wagner, E.G.6
-
54
-
-
79961239912
-
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
-
PMID:21768388
-
Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA. Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci USA 2011; 108:12875-80; PMID:21768388; http://dx.doi.org/10.1073/pnas.1109379108.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 12875-12880
-
-
Gogol, E.B.1
Rhodius, V.A.2
Papenfort, K.3
Vogel, J.4
Gross, C.A.5
-
55
-
-
78149460196
-
Transcriptional and post-transcriptional regulation of the Escherichia coli luxS mRNA; Involvement of the sRNA MicA
-
PMID:20976191
-
Udekwu KI. Transcriptional and post-transcriptional regulation of the Escherichia coli luxS mRNA; involvement of the sRNA MicA. PLoS One 2010; 5:e13449; PMID:20976191; http://dx.doi. org/10.1371/journal.pone.0013449.
-
(2010)
PLoS One
, vol.5
-
-
Udekwu, K.I.1
-
56
-
-
4944236203
-
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli
-
PMID:15466019
-
Chen S, Zhang A, Blyn LB, Storz G. MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli. J Bacteriol 2004; 186:6689-97; PMID:15466019; http://dx.doi.org/10.1128/JB.186.20.6689-6697.2004.
-
(2004)
J Bacteriol
, vol.186
, pp. 6689-6697
-
-
Chen, S.1
Zhang, A.2
Blyn, L.B.3
Storz, G.4
-
57
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
PMID:19620966
-
Pfeiffer V, Papenfort K, Lucchini S, Hinton JC, Vogel J. Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol 2009; 16:840-6; PMID:19620966; http://dx.doi.org/10.1038/nsmb.1631.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.4
Vogel, J.5
-
58
-
-
0028928471
-
Secondary structures of Escherichia coli antisense micF RNA, the 5'-end of the target ompF mRNA, and the RNA/RNA duplex
-
PMID:7534474
-
Schmidt M, Zheng P, Delihas N. Secondary structures of Escherichia coli antisense micF RNA, the 5'-end of the target ompF mRNA, and the RNA/RNA duplex. Biochemistry 1995; 34:3621-31; PMID:7534474; http://dx.doi.org/10.1021/ bi00011a017.
-
(1995)
Biochemistry
, vol.34
, pp. 3621-3631
-
-
Schmidt, M.1
Zheng, P.2
Delihas, N.3
-
59
-
-
84859988230
-
Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA
-
PMID:22458297
-
Corcoran CP, Podkaminski D, Papenfort K, Urban JH, Hinton JC, Vogel J. Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA. Mol Microbiol 2012; 84:428-45; PMID:22458297; http://dx.doi. org/10.1111/j.1365-2958.2012.08031.x.
-
(2012)
Mol Microbiol
, vol.84
, pp. 428-445
-
-
Corcoran, C.P.1
Podkaminski, D.2
Papenfort, K.3
Urban, J.H.4
Hinton, J.C.5
Vogel, J.6
-
60
-
-
84859996025
-
A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp
-
PMID:22324810
-
Holmqvist E, Unoson C, Reimegård J, Wagner EG. A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp. Mol Microbiol 2012; 84:414-27; PMID:22324810; http://dx.doi.org/10.1111/j.1365-2958. 2012.07994.x.
-
(2012)
Mol Microbiol
, vol.84
, pp. 414-427
-
-
Holmqvist, E.1
Unoson, C.2
Reimegård, J.3
Wagner, E.G.4
-
61
-
-
57149118846
-
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
-
PMID:18953042
-
Guillier M, Gottesman S. The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. Nucleic Acids Res 2008; 36:6781-94; PMID:18953042; http://dx.doi.org/10.1093/nar/gkn742.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6781-6794
-
-
Guillier, M.1
Gottesman, S.2
-
62
-
-
33744950278
-
Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coli
-
PMID:16513633
-
Douchin V, Bohn C, Bouloc P. Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in Escherichia coli. J Biol Chem 2006; 281:12253-9; PMID:16513633; http://dx.doi.org/10.1074/jbc. M600819200.
-
(2006)
J Biol Chem
, vol.281
, pp. 12253-12259
-
-
Douchin, V.1
Bohn, C.2
Bouloc, P.3
-
63
-
-
78649346987
-
Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica
-
PMID:20979336
-
Balbontín R, Fiorini F, Figueroa-Bossi N, Casadesús J, Bossi L. Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica. Mol Microbiol 2010; 78:380-94; PMID:20979336; http://dx.doi.org/10.1111/j.1365-2958.2010.07342.x.
-
(2010)
Mol Microbiol
, vol.78
, pp. 380-394
-
-
Balbontín, R.1
Fiorini, F.2
Figueroa-Bossi, N.3
Casadesús, J.4
Bossi, L.5
-
64
-
-
33750297745
-
Conserved small non-coding RNAs that belong to the sigma(E) regulon: Role in down-regulation of outer membrane proteins
-
Johansen J, Rasmussen AA, Overgaard M, Valentin-Hansen P. Conserved small non-coding RNAs that belong to the sigma(E) regulon: Role in down-regulation of outer membrane proteins. J Mol Microbiol 2006; 364:1-8.
-
(2006)
J Mol Microbiol
, vol.364
, pp. 1-8
-
-
Johansen, J.1
Rasmussen, A.A.2
Overgaard, M.3
Valentin-Hansen, P.4
-
65
-
-
57149111586
-
Small RNA binding to 5' mRNA coding region inhibits translational initiation
-
PMID:19111662
-
Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J. Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell 2008; 32:827-37; PMID:19111662; http://dx.doi. org/10.1016/j.molcel.2008.10.027.
-
(2008)
Mol Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
|