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Volumn 17, Issue 2, 2013, Pages 289-299

Anammox bacterial populations in deep marine hypersaline gradient systems

Author keywords

16S rRNA gene library; Anaerobic ammonium oxidation; Anammox activity; Chemocline; Hypersaline basins biodiversity

Indexed keywords

AMMONIA; HYDRAZINE DERIVATIVE; NITROGEN; SEA WATER;

EID: 84874556512     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-013-0516-x     Document Type: Article
Times cited : (45)

References (50)
  • 2
    • 67249101298 scopus 로고    scopus 로고
    • Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin
    • Borin S, Brusetti L, Mapelli F, D'Auria G, Brusa T, Marzorati M et al (2009) Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin. Proc Natl Acad Sci USA 106: 9151-9156.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 9151-9156
    • Borin, S.1    Brusetti, L.2    Mapelli, F.3    D'Auria, G.4    Brusa, T.5    Marzorati, M.6
  • 3
    • 33847752606 scopus 로고    scopus 로고
    • New developments in the marine nitrogen cycle
    • Brandes JA, Devol AH, Deutsch C (2007) New developments in the marine nitrogen cycle. Chem Rev 107: 577-589.
    • (2007) Chem Rev , vol.107 , pp. 577-589
    • Brandes, J.A.1    Devol, A.H.2    Deutsch, C.3
  • 6
    • 0030850570 scopus 로고    scopus 로고
    • Determination of elemental sulphur in environmental samples by gas chromatography-mass spectrometry
    • Chen Y, Joly HA, Belzile N (1997) Determination of elemental sulphur in environmental samples by gas chromatography-mass spectrometry. Chem Geol 137: 195-200.
    • (1997) Chem Geol , vol.137 , pp. 195-200
    • Chen, Y.1    Joly, H.A.2    Belzile, N.3
  • 7
    • 84874560417 scopus 로고    scopus 로고
    • CIESM No. 33. CIESM Workshop Monographs. In: Briand F (ed) Commission Internationale pour l'Exploration de la Mer Mediterranee, Monaco
    • CIESM (2008) The Messinian Salinity Crisis from mega-deposits to microbiology-a consensus report. No. 33. CIESM Workshop Monographs. In: Briand F (ed) Commission Internationale pour l'Exploration de la Mer Mediterranee, Monaco, pp 1-168.
    • (2008) The Messinian Salinity Crisis from mega-deposits to microbiology-a consensus report , pp. 1-168
  • 9
    • 65349094528 scopus 로고    scopus 로고
    • Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary
    • Dale OR, Tobias CR, Song B (2009) Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary. Environ Microbiol 11: 1194-1207.
    • (2009) Environ Microbiol , vol.11 , pp. 1194-1207
    • Dale, O.R.1    Tobias, C.R.2    Song, B.3
  • 12
    • 0000969378 scopus 로고
    • The interface between oxic seawater and the anoxic Bannock Brine; its sharpness and the consequneces for the redox-related cycling of Mn and Ba
    • De Lange GJ, Catalano G, Klinkhammer GP, Luther GW III (1990a) The interface between oxic seawater and the anoxic Bannock Brine; its sharpness and the consequneces for the redox-related cycling of Mn and Ba. Mar Chem 31: 205-217.
    • (1990) Mar Chem , vol.31 , pp. 205-217
    • De Lange, G.J.1    Catalano, G.2    Klinkhammer, G.P.3    Luther, G.W.4
  • 14
    • 66249110685 scopus 로고    scopus 로고
    • Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom)
    • Dong LF, Smith CJ, Papaspyrou S, Stott A, Osborn MA, Nedwell DB (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Appl Environ Microbiol 75: 3171-3179.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 3171-3179
    • Dong, L.F.1    Smith, C.J.2    Papaspyrou, S.3    Stott, A.4    Osborn, M.A.5    Nedwell, D.B.6
  • 16
    • 70449722860 scopus 로고    scopus 로고
    • Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany)
    • Hamersley MR, Woebken D, Boehrer B, Schultze M, Lavik G, Kuypers MMM (2009) Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany). Sys Appl Microbiol 32: 571-582.
    • (2009) Sys Appl Microbiol , vol.32 , pp. 571-582
    • Hamersley, M.R.1    Woebken, D.2    Boehrer, B.3    Schultze, M.4    Lavik, G.5    Kuypers, M.M.M.6
  • 20
    • 33745884710 scopus 로고    scopus 로고
    • Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry
    • Hopmans EC, Kienhuis MVM, Rattray JE, Jaeschke A, Schouten S, Sinninghe Damsté JS (2006) Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry. Rapid Commun Mass Spectrom 20: 2099-2103.
    • (2006) Rapid Commun Mass Spectrom , vol.20 , pp. 2099-2103
    • Hopmans, E.C.1    Kienhuis, M.V.M.2    Rattray, J.E.3    Jaeschke, A.4    Schouten, S.5    Sinninghe Damsté, J.S.6
  • 22
    • 38749153187 scopus 로고    scopus 로고
    • Rates and regulation of anaerobic ammonium oxidation and denitrification in the Black Sea
    • Jensen MM, Kuypers MMM, Lavik G, Thamdrup B (2008) Rates and regulation of anaerobic ammonium oxidation and denitrification in the Black Sea. Limnol Oceanogr 53: 23-36.
    • (2008) Limnol Oceanogr , vol.53 , pp. 23-36
    • Jensen, M.M.1    Kuypers, M.M.M.2    Lavik, G.3    Thamdrup, B.4
  • 26
    • 60449094818 scopus 로고    scopus 로고
    • Anammox in tidal marsh sediments: the role of salinity, nitrogen loading, and marsh vegetation
    • Koop-Jackobsen K, Giblin AE (2009) Anammox in tidal marsh sediments: the role of salinity, nitrogen loading, and marsh vegetation. Estuaries Coasts 32: 238-245.
    • (2009) Estuaries Coasts , vol.32 , pp. 238-245
    • Koop-Jackobsen, K.1    Giblin, A.E.2
  • 28
    • 18144367022 scopus 로고    scopus 로고
    • Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation
    • Kuypers MMM, Lavik G, Woebken D, Schmid M, Fuchs BM, Amann R et al (2005) Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. Proc Natl Acad Sci USA 102: 6478-6483.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 6478-6483
    • Kuypers, M.M.M.1    Lavik, G.2    Woebken, D.3    Schmid, M.4    Fuchs, B.M.5    Amann, R.6
  • 30
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 31
    • 0025591795 scopus 로고
    • Reduced sulphur in the hypersaline anoxic basins of the Mediterranean Sea
    • Luther GW III, Catalano G, De Lange GJ, Woittiez JRW (1990) Reduced sulphur in the hypersaline anoxic basins of the Mediterranean Sea. Mar Chem 31: 137-152.
    • (1990) Mar Chem , vol.31 , pp. 137-152
    • Luther, G.W.1    Catalano, G.2    De Lange, G.J.3    Woittiez, J.R.W.4
  • 33
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB et al (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 34
    • 10744230197 scopus 로고    scopus 로고
    • Candidatus "Scalindua brodae", sp. nov., Candidatus "Scalindua wagneri", sp. nov., two new species of anaerobic ammonium oxidizing bacteria
    • Schmid M, Walsh K, Webb R, Rijpstra WI, van de Pas-Schoonen K, Verbruggen MJ et al (2003) Candidatus "Scalindua brodae", sp. nov., Candidatus "Scalindua wagneri", sp. nov., two new species of anaerobic ammonium oxidizing bacteria. Syst Appl Microbiol 26: 529-538.
    • (2003) Syst Appl Microbiol , vol.26 , pp. 529-538
    • Schmid, M.1    Walsh, K.2    Webb, R.3    Rijpstra, W.I.4    van de Pas-Schoonen, K.5    Verbruggen, M.J.6
  • 38
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton DR, Furlong MA, Rathbun SL, Whitman WB (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-4376.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 39
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 40
    • 0036197004 scopus 로고    scopus 로고
    • 2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments
    • 2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments. Appl Environ Microbiol 68: 1312-1318.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1312-1318
    • Thamdrup, B.1    Dalsgaard, T.2
  • 42
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res 24: 4876-4882.
    • (1997) Nucleic Acid Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 36148976101 scopus 로고    scopus 로고
    • Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study
    • Wakeham SG, Amann R, Freeman KH, Hopmans EC, Jørgensen BB, Putnam IF et al (2007) Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study. Org Geochem 38: 2070-2097.
    • (2007) Org Geochem , vol.38 , pp. 2070-2097
    • Wakeham, S.G.1    Amann, R.2    Freeman, K.H.3    Hopmans, E.C.4    Jørgensen, B.B.5    Putnam, I.F.6
  • 46
    • 55649098796 scopus 로고    scopus 로고
    • Organic carbon, and not copper, controls denitrification in oxygen minimum zones of the ocean
    • Ward BB, Tuit CB, Jayakumar A, Rich JJ, Moffett J, Vaqvi SWA (2008) Organic carbon, and not copper, controls denitrification in oxygen minimum zones of the ocean. Deep-Sea Res. I 55: 1672-1683.
    • (2008) Deep-Sea Res. I , vol.55 , pp. 1672-1683
    • Ward, B.B.1    Tuit, C.B.2    Jayakumar, A.3    Rich, J.J.4    Moffett, J.5    Vaqvi, S.W.A.6
  • 47
    • 52949102049 scopus 로고    scopus 로고
    • A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones
    • Woebken D, Lam P, Kuypers MMM, Naqvi SWA, Kartal B, Strous M et al (2008) A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ Microbiol 10: 3106-3119.
    • (2008) Environ Microbiol , vol.10 , pp. 3106-3119
    • Woebken, D.1    Lam, P.2    Kuypers, M.M.M.3    Naqvi, S.W.A.4    Kartal, B.5    Strous, M.6
  • 48
    • 36849028081 scopus 로고    scopus 로고
    • Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea
    • Yakimov MM, La Cono V, Denaro R, D'Auria G, Decembrini F, Timmis KN et al (2007) Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea. ISME J 0: 1-13.
    • (2007) ISME J , vol.0 , pp. 1-13
    • Yakimov, M.M.1    La Cono, V.2    Denaro, R.3    D'Auria, G.4    Decembrini, F.5    Timmis, K.N.6
  • 49
    • 34547684285 scopus 로고    scopus 로고
    • Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China)
    • Zhang Y, Ruan XH, Op den Camp HJMO et al (2007) Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China). Environ Microbiol 9: 2375-2382.
    • (2007) Environ Microbiol , vol.9 , pp. 2375-2382
    • Zhang, Y.1    Ruan, X.H.2    Op Den Camp, H.J.M.O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.