Structural and Docking Studies of a Nucleoside Diphosphate Kinase 1 (CsNDPK1) from Tea [Camellia sinensis (L.) O. Kuntze]

Applied Biochemistry and Biotechnology

Volumn 168, Issue 7, 2012, Pages 1907-1916

  Prabu, Gajjeraman ^a,b   Thirugnanasambantham, Krishnaraj ^a   Mandal, Abul Kalam Azad ^a,c  

^a UPASI Tea Research Foundation   (India)

^b Department of Biotechnology   (India)

^c VIT UNIVERSITY   (India)

Author keywords

Camellia sinensis; Cytosolic; Docking; Modeling; Nucleoside diphosphate kinase

Indexed keywords

CAMELLIA SINENSIS; CATALYTIC SITES; CYTOSOLIC; DOCKING STUDIES; FULL-LENGTH CDNA; HOMOLOGY MODELING; HOUSEKEEPING GENE; INTRACELLULAR COMMUNICATION; ISOFORMS; NUCLEOSIDE-DIPHOSPHATE KINASE; OPEN READING FRAME; PROTEIN-PROTEIN INTERACTIONS; RELIABLE MODELS; STRUCTURE-BASED; TEA LEAVES; TRIPHOSPHATE;

BINDING SITES; CLONING; DOCKING; ENZYMES; MODELS; PHYSIOLOGICAL MODELS; PHYSIOLOGY; PLANTS (BOTANY); PROTEINS;

BIOMOLECULES;

NUCLEOSIDE DIPHOSPHATE KINASE; NUCLEOSIDE DIPHOSPHATE KINASE 1; UNCLASSIFIED DRUG;

ARTICLE; ENZYME STRUCTURE; MOLECULAR DOCKING; MOLECULAR MODEL; MOLECULAR WEIGHT; NONHUMAN; OPEN READING FRAME; TEA;

AMINO ACID SEQUENCE; BASE SEQUENCE; CAMELLIA SINENSIS; CATALYTIC DOMAIN; CLONING, MOLECULAR; MOLECULAR DOCKING SIMULATION; MOLECULAR SEQUENCE DATA; NUCLEOSIDE-DIPHOSPHATE KINASE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

CAMELLIA SINENSIS;

EID: 84874466864     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-012-9906-2     Document Type: Article

References (17)

1. Cipollini, G.; Berti, A.; Fiore, L.; Rainaldi, G.; Basolo, F.; Merlo, G.; Bevilacqua, G.; & Caligo, M. A. (1997). International Journal Cancer, 73, 297-302.
2. Johansson, M.; Hammargren, J.; Uppsall, E.; Mackenzie, A.; & Knorpp, C. (2008). Plant Science, 174, 192-199. (Pubitemid 350298626)
3. Dorion, S.; Matton, D. P.; & Rivoal, J. (2006). Planta, 224, 108-124. (Pubitemid 43800706)
4. Hasunuma, K.; Yabe, N.; Yoshida, Y.; Ogura, Y.; & Hamada, T. (2003). Journal of Bioenergetics and Biomembranes, 35, 57-65. (Pubitemid 36667581)
5. Janin, J.; Dumas, C.; Morera, S.; Xu, Y.; Meyer, P.; Chiadmi, M.; & Cherfils, J. (2000). Journal of Bioenergetics and Biomembranes, 32, 215-225.
6. Larsen, K. (2001). Journal of Plant Physiology, 158, 267-272.
7. Nomura, T.; Yatsunami, K.; Honda, A.; Sugimoto, Y.; Fukui, T.; Zhang, J.; Yamamoto, J.; & Ichikawa, A. (1992). Archives of Biochemistry and Biophysics, 297, 42-45.
8. Pan, L.; Kawai, M.; Yano, A.; & Uchimiya, H. (2000). Plant Physiology, 122, 447-452.
9. Chunlei, M. A.; & Liang, C. (2007). Frontiers of Agriculture in China, 1, 449-455. (Pubitemid 350209217)
10. Prabu, G. R.; Thirugnanasambantham, K.; Mandal, A. K. A.; & Saravanan, A. (2012). Biologia Plantarum, 56(1), 140-144.
11. Kyte, J.; & Doolittle, R. (1982). Journal of Molecular Biology, 157, 105-132.
12. Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; & Kumar, S. (2011). Molecular Biology and Evolution, 28, 2731-2739.
13. Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.; & Thornton, J. M. (1993). Journal of Applied Crystallography, 26, 283-291.
14. Eisenberg, D.; Luthy, R.; & Bowie, J. U. (1997). Methods in Enzymology, 277, 396-404. (Pubitemid 27390932)
15. Wiederstein, M.; & Sippl, M. J. (2007). Nucleic Acids Research, 35, W407-W410.
16. Kamps, M. P.; & Sefton, B. M. (1986). Molecular and Cellular Biology, 6, 751-757.
17. Thirugnanasambantham, K.; Prabu, G. R.; Senthilkumar, P.; Suresh Ramraj, S. C.; & Mandal, A. K. A. (2011). Plant Physiology and Biochemistry, 49, 565-571.