Richness and Composition of Niche-Assembled Viral Pathogen Communities

PLoS ONE

Volumn 8, Issue 2, 2013, Pages

  Seabloom, Eric W ^a   Borer, Elizabeth T ^a   Lacroix, Christelle ^a   Mitchell, Charles E ^b   Power, Alison G ^c  

^a UNIVERSITY OF MINNESOTA   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^c Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NITROGEN; PHOSPHORUS;

ARTICLE; CEREAL YELLOW DWARF VIRUS; CONTROLLED STUDY; ECOLOGICAL NICHE; GRASS; HOST PATHOGEN INTERACTION; LATITUDE; LUTEOVIRUS; NONHUMAN; NUTRIENT; NUTRITION; ORGANISM COMMUNITY; PREVALENCE; SPECIES COMPOSITION; SPECIES DIFFERENCE; SPECIES DISTRIBUTION; SPECIES RICHNESS; UNITED STATES; VIRUS ASSEMBLY;

ANIMALS; APHIDS; CALIFORNIA; COINFECTION; HOST-PATHOGEN INTERACTIONS; HUMANS; INSECT VECTORS; OREGON; PLANT DISEASES; PLANT VIRUSES; POACEAE; PREVALENCE; RNA VIRUSES;

EID: 84874464580     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055675     Document Type: Article

References (91)

1. Jones LR, (1924) The Relation of Environment to Disease in Plants. American Journal of Botany 11: 601-609.
2. Colhoun J, (1973) Effects of environmental factors on plant disease. Annual Review of Phytopathology 11: 343-364.
3. Agrios GN (1978) Plant Pathology. Orlando, Floriday, USA: Academic Press.
4. Kniskern JM, Rausher MD, (2006) Environmental variation mediates the deleterious effects of Coleosporium ipomoeae on Ipomoea purpurea. Ecology 87: 675-685.
5. Springer YP, Hardcastle BA, Gilbert GS, (2007) Soil calcium and plant disease in serpentine ecosystems: a test of the pathogen refuge hypothesis. Oecologia 151: 10-21.
6. Al-Naimi FA, Garrett KA, Bockus WW, (2005) Competition, facilitation, and niche differentiation in two foliar pathogens. Oecologia 143: 449-457.
7. Burdon JJ, Chilvers GA, (1982) HOST DENSITY AS A FACTOR IN PLANT-DISEASE ECOLOGY. Annual Review of Phytopathology 20: 143-166.
8. Thrall PH, Godfree R, Burdon JJ, (2003) Influence of spatial structure on pathogen colonization and extinction: a test using an experimental metapopulation. Plant Pathology 52: 350-361.
9. Carlsson-Graner U, Thrall PH, (2006) The impact of host longevity on disease transmission: host-pathogen dynamics and the evolution of resistance. Evolutionary Ecology Research 8: 659-675.
10. Gilbert GS, Webb CO, (2007) Phylogenetic signal in plant pathogen-host range. Proceedings of the National Academy of Sciences of the United States of America 104: 4979-4983.
11. Lyimo IN, Ferguson HM, (2009) Ecological and evolutionary determinants of host species choice in mosquito vectors. Trends in Parasitology 25: 189-196.
12. Dodds P, Thrall P, (2009) Recognition events and host-pathogen co-evolution in gene-for-gene resistance to flax rust. Functional Plant Biology 36: 395-408.
13. Flor H, (1955) Host-parasite interactions in flax- its genetic and other implications. Phytopathology 45: 680-685.
14. Garcia-Arenal F, Fraile A, Malpica JM, (2003) Variation and evolution of plant virus populations. International Microbiology 6: 225-232.
15. Ahlquist P, Noueiry AO, Lee WM, Kushner DB, Dye BT, (2003) Host factors in positive-strand RNA virus genome replication. Journal of Virology 77: 8181-8186.
16. Fereres A, Moreno A, (2009) Behavioural aspects influencing plant virus transmission by homopteran insects. Virus Research 141: 158-168.
17. Minakawa N, Omukunda E, Zhou GF, Githeko A, Yan GY, (2006) Malaria vector productivity in relation to the highland environment in Kenya. American Journal of Tropical Medicine and Hygiene 75: 448-453.
18. Lello J, Boag B, Fenton A, Stevenson IR, Hudson PJ, (2004) Competition and mutualism among the gut helminths of a mammalian host. Nature 428: 840-844.
19. Ezenwa VO, Godsey MS, King RJ, Guptill SC, (2006) Avian diversity and West Nile virus: testing associations between biodiversity and infectious disease risk. Proceedings of the Royal Society B-Biological Sciences 273: 109-117.
20. Keesing F, Holt RD, Ostfeld RS, (2006) Effects of species diversity on disease risk. Ecology Letters 9: 485-498.
21. Pope K, Masuoka P, Rejmankova E, Grieco J, Johnson S, et al. (2005) Mosquito habitats, land use, and malaria risk in Belize from satellite imagery. Ecological Applications 15: 1223-1232.
22. Dobson A, Lafferty KD, Kuris AM, Hechinger RF, Jetz W, (2008) Homage to Linnaeus: How many parasites? How many hosts? Proceedings of the National Academy of Sciences of the United States of America 105: 11482-11489.
23. Lindenfors P, Nunn CL, Jones KE, Cunningham AA, Sechrest W, et al. (2007) Parasite species richness in carnivores: effects of host body mass, latitude, geographical range and population density. Global Ecology and Biogeography 16: 496-509.
24. Strong DR, Levin DA, (1975) Species richness of parasitic fungi of British trees. Proceedings of the National Academy of Sciences of the United States of America 72: 2116-2119.
25. Seabloom EW, Borer ET, Mitchell CE, Power AG, (2010) Viral diversity and prevalence gradients in North American Pacific Coast grasslands. Ecology 91: 721-732.
26. Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, et al. (2010) A Catalog of Reference Genomes from the Human Microbiome. Science 328: 994-999.
27. Khoruts A, Dicksved J, Jansson JK, Sadowsky MJ, (2010) Changes in the Composition of the Human Fecal Microbiome After Bacteriotherapy for Recurrent Clostridium difficile-associated Diarrhea. Journal of Clinical Gastroenterology 44: 354-360.
28. Miller WA, Rasochova L, (1997) Barley yellow dwarf viruses. Annual Review of Phytopathology 35: 167-190.
29. Hood ME, (2003) Dynamics of multiple infection and within-host competition by the anther-smut pathogen. American Naturalist 162: 122-133.
30. Lal RB, Rudolph D, Alpers MP, Sulzer AJ, Shi YP, et al. (1994) Immunologic cross-reactivity between structural proteins of human T-cell lymphotropic virus type I and the blood stage of Plasmodium falciparum. Clinical and Diagnostic Laboratory Immunology 1: 5-10.
31. Kamal SM, Bianchi L, Al Tawil A, Koziel M, Khalifa KE, et al. (2001) Specific cellular immune response and cytokine patterns in patients coinfected with hepatitis C virus and Schistosoma mansoni. Journal of Infectious Diseases 184: 972-982.
32. Kamal SM, Rasenack JW, Bianchi L, Al Tawil A, Khalifa KES, et al. (2001) Acute hepatitis C without and with schistosomiasis: Correlation with hepatitis C-specific CD4(+) T-cell and cytokine response. Gastroenterology 121: 646-656.
33. Tirado SMC, Yoon KJ, (2003) Antibody-dependent enhancement of virus infection and disease. Viral Immunology 16: 69-86.
34. Power AG, (1996) Competition between viruses in a complex plant-pathogen. Ecology 77: 1004-1010.
35. Dove ADM, Cribb TH, (2006) Species accumulation curves and their applications in parasite ecology. Trends in Parasitology 22: 568-574.
36. Chase JM, (2007) Drought mediates the importance of stochastic community assembly. Proceedings of the National Academy of Sciences of the United States of America 104: 17430-17434.
37. Harpole WS, Tilman D, (2006) Non-neutral patterns of species abundance in grassland communities. Ecology Letters 9: 15-23.
38. Harvell CD, Mitchell CE, Ward JR, Altizer S, Dobson AP, et al. (2002) Ecology- Climate warming and disease risks for terrestrial and marine biota. Science 296: 2158-2162.
39. Laneri K, Bhadra A, Ionides EL, Bouma M, Dhiman RC, et al. (2010) Forcing Versus Feedback: Epidemic Malaria and Monsoon Rains in Northwest India. Plos Computational Biology 6.
40. Borer ET, Seabloom EW, Mitchell CE, Power AG, (2010) Local context drives infection of grasses by vector-borne generalist viruses. Ecology Letters 13: 810-818.
41. LoGiudice K, Ostfeld RS, Schmidt KA, Keesing F, (2003) The ecology of infectious disease: Effects of host diversity and community composition on Lyme disease risk. Proceedings of the National Academy of Sciences of the United States of America 100: 567-571.
42. Cumming GS, Guegan JF, (2006) Food webs and disease: Is pathogen diversity limited by vector diversity? Ecohealth 3: 163-170.
43. Dobson A, Cattadori I, Holt RD, Ostfeld RS, Keesing F, et al. (2006) Sacred Cows and Sympathetic Squirrels: The Importance of Biological Diversity to Human Health. Plos Medicine 3: 714-718.
44. Poulin R, (1995) PHYLOGENY, ECOLOGY, AND THE RICHNESS OF PARASITE COMMUNITIES IN VERTEBRATES. Ecological Monographs 65: 283-302.
45. Hall GS, Peters JS, Little DP, Power AG, (2010) Plant community diversity influences vector behaviour and Barley yellow dwarf virus population structure. Plant Pathology 59: 1152-1158.
46. Borer ET, Antonovics J, Kinkel LL, Hudson PJ, Daszak P, et al. (2011) Bridging taxonomic and disciplinary divides in infectious disease. Ecohealth.
47. Power AG, Mitchell CE, (2004) Pathogen spillover in disease epidemics. American Naturalist 164: S79-S89.
48. Mitchell CE, Tilman D, Groth JV, (2002) Effects of grassland plant species diversity, abundance, and composition on foliar fungal disease. Ecology 83: 1713-1726.
49. Irwin ME, Thresh JM, (1990) Epidemiology of Barley Yellow Dwarf- a study in ecological complexity. Annual Review of Phytopathology 28: 393-424.
50. D'Arcy C (1995) Symptomology and host range of Barley Yellow Dwarf. In: D'Arcy CJ, Burnett PA, editors. Barley Yellow Dwarf: 40 Years of Progress. St. Paul, Minnesota: The American Phytopathological Society. pp. 9-28.
51. Borer ET, Hosseini PR, Seabloom EW, Dobson AP, (2007) Pathogen-induced reversal of native dominance in a grassland community. Proceedings of the National Academy of Sciences of the United States of America 104: 5473-5478.
52. Malmstrom CM, Hughes CC, Newton LA, Stoner CJ, (2005) Virus infection in remnant native bunchgrasses from invaded California grasslands. New Phytologist 168: 217-230.
53. Malmstrom CM, McCullough AJ, Johnson HA, Newton LA, Borer ET, (2005) Invasive annual grasses indirectly increase virus incidence in California native perennial bunchgrasses. Oecologia 145: 153-164.
54. Halbert S, Voegtlin D (1995) Biology and taxonomy of vectors of barley yellow dwarf viruses. In: D'Arcy CJ, Burnett PA, editors. Barley Yellow Dwarf: 40 Years of Progress. St. Paul, Minnesota: The American Phytopathological Society. pp. 217-258.
55. Rochow WF, (1970) Barley Yellow Dwarf Virus: Phenotypic Mixing and Vector Specificity. Science 167: 875-878.
56. Seabloom EW, Hosseini PR, Power AG, Borer ET, (2009) Diversity and Composition of Viral Communities: Coinfection of Barley and Cereal Yellow Dwarf Viruses in California Grasslands. The American Naturalist 173: E79-E98.
57. Seabloom EW, Williams JW, Slayback D, Stoms DM, Viers JH, et al. (2006) Human impacts, plant invasion, and imperiled, plant species in California. Ecological Applications 16: 1338-1350.
58. Borer ET, Adams VT, Engler GA, Adams AL, Schumann CB, et al. (2009) Aphid fecundity and grassland invasion: invader life history is the key. Ecological Applications 19: 1187-1196.
59. R Development Core Team (2010) R: A language and environment for statistical computing R Foundation for Statistical Computing, Vienna, Austria.
60. Anderson MJ, (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecology 26: 32-46.
61. Legendre P, Anderson MJ, (1999) Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments. Ecological Monographs 69: 1-24.
62. McArdle BH, Anderson MJ, (2001) Fitting multivariate models to community data: A comment on distance-based redundancy analysis. Ecology 82: 290-297.
63. Crawley MJ (2007) The R Book. West Sussex, England: John Wiley & Sons Ltd. 942 p.
64. Gaidet N, Caron A, Cappelle J, Cumming GS, Balanca G, et al. (2012) Understanding the ecological drivers of avian influenza virus infection in wildfowl: a continental-scale study across Africa. Proceedings of the Royal Society B-Biological Sciences 279: 1131-1141.
65. Yoshida-Takashima Y, Nunoura T, Kazama H, Noguchi T, Inoue K, et al. (2012) Spatial Distribution of Viruses Associated with Planktonic and Attached Microbial Communities in Hydrothermal Environments. Applied and Environmental Microbiology 78: 1311-1320.
66. Sacristan S, Garcia-Arenal F, (2008) The evolution of virulence and pathogenicity in plant pathogen populations. Molecular Plant Pathology 9: 369-384.
67. Zhang ZY, Lin ZS, Xin ZY, (2009) Research progress in BYDV resistance genes derived from wheat and its wild relatives. Journal of Genetics and Genomics 36: 567-573.
68. Kosova K, Chrpova J, Sip V, (2008) Recent advances in breeding of cereals for resistance to barley yellow dwarf virus- A review. Czech Journal of Genetics and Plant Breeding 44: 1-10.
69. Scholz M, Ruge-Wehling B, Habekuss A, Schrader O, Pendinen G, et al. (2009) Ryd4 (Hb): a novel resistance gene introgressed from Hordeum bulbosum into barley and conferring complete and dominant resistance to the barley yellow dwarf virus. Theoretical and Applied Genetics 119: 837-849.
70. Tompkins DM, White AR, Boots M, (2003) Ecological replacement of native red squirrels by invasive greys driven by disease. Ecology Letters 6: 189-196.
71. Borer ET, Mitchell CE, Power AG, Seabloom EW, (2009) Consumers indirectly increase infection risk in grassland food webs. Proceedings of the National Academy of Sciences of the United States of America 106: 503-506.
72. Tilman D, Fargione J, Wolff B, D'Antonio C, Dobson A, et al. (2001) Forecasting agriculturally driven global environmental change. Science 292: 281-284.
73. Vitousek PM, Aber JD, Howarth RW, Likens GE, Matson PA, et al. (1997) Human alteration of the global nitrogen cycle: Sources and consequences. Ecological Applications 7: 737-750.
74. Vitousek PM, Mooney HA, Lubchenco J, Melillo JM, (1997) Human domination of Earth's ecosystems. Science 277: 494-499.
75. Rockstrom J, Steffen W, Noone K, Persson A, Chapin FS, et al. (2009) A safe operating space for humanity. Nature 461: 472-475.
76. Clasen JL, Elser JJ, (2007) The effect of host Chlorella NC64A carbon: phosphorus ratio on the production of Paramecium bursaria Chlorella Virus-1. Freshwater Biology 52: 112-122.
77. Beck MA, Levander OA, (2000) Host nutritional status and its effect on a viral pathogen. Journal of Infectious Diseases 182: S93-S96.
78. Smith VH, Jones TP, Smith MS, (2005) Host nutrition and infectious disease: an ecological view. Frontiers in Ecology and the Environment 3: 268-274.
79. Hillebrand H, Gruner DS, Borer ET, Bracken MES, Cleland EE, et al. (2007) Consumer versus resource control of producer diversity depends on ecosystem type and producer community structure. Proceedings of the National Academy of Sciences of the United States of America 104: 10904-10909.
80. Harpole WS, Tilman D, (2007) Grassland species loss resulting from reduced niche dimension. Nature 446: 791-793.
81. Cronin JP, Welsh ME, Dekkers MG, Abercrombie ST, Mitchell CE, (2010) Host physiological phenotype explains pathogen reservoir potential. Ecology Letters 13: 1221-1232.
82. Allan BF, Langerhans RB, Ryberg WA, Landesman WJ, Griffin NW, et al. (2009) Ecological correlates of risk and incidence of West Nile virus in the United States. Oecologia 158: 699-708.
83. Rizzo DM, Garbelotto M, (2003) Sudden oak death: endangering California and Oregon forest ecosystems. Frontiers in Ecology and the Environment 1: 197-204.
84. Seabloom EW, Borer ET, Jolles A, Mitchell CE, (2009) Direct and indirect effects of viral pathogens and the environment on invasive grass fecundity in Pacific Coast grasslands. Journal of Ecology 97: 1264-1273.
85. Wen F, Lister RM, Fattouh FA, (1991) Cross-protection among strains of barley yellow dwarf virus. Journal of General Virology 72: 791-799.
86. Bentwich Z, Kalinkovich A, Weisman Z, Borkow G, Beyers N, et al. (1999) Can eradication of helminthic infections change the face of AIDS and tuberculosis? Immunology Today 20: 485-487.
87. Jolles AE, Ezenwa VO, Etienne RS, Turner WC, Olff H, (2008) Interactions between macroparasites and microparasites drive infection patterns in free-ranging African buffalo. Ecology 89: 2239-2250.
88. Taylor LH, Latham SM, Woolhouse MEJ, (2001) Risk factors for human disease emergence. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 356: 983-989.
89. Power AG, Flecker AS (2003) Virus specificity in disease systems: are species redundant? In: Kareiva P, Levin SA, editors. The Importance of Species: Perspectives on Expendability and Triage. Princeton, NJ: Princeton University Press. pp. 330-346.
90. Service MW (1991) AGRICULTURAL-DEVELOPMENT AND ARTHROPOD-BORNE DISEASES- A REVIEW. Revista De Saude Publica 25: 165-178.
91. Sota T, Mogi M, (1989) EFFECTIVENESS OF ZOOPROPHYLAXIS IN MALARIA CONTROL- A THEORETICAL INQUIRY, WITH A MODEL FOR MOSQUITO POPULATIONS WITH 2 BLOODMEAL HOSTS. Medical and Veterinary Entomology 3: 337-345.