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Volumn 14, Issue , 2013, Pages

A variance component based multi-marker association test using family and unrelated data

Author keywords

Association studies; Family data; Multi marker test; Score test

Indexed keywords

ARTICLE; FAMILY; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; KERNEL METHOD; POPULATION STRUCTURE; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICS;

EID: 84874443422     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-14-17     Document Type: Article
Times cited : (16)

References (29)
  • 1
    • 44349132708 scopus 로고    scopus 로고
    • Common and rare variants in multifactorial susceptibility to common diseases
    • 10.1038/ng.f.136, 2527050, 18509313
    • Bodmer W, Bonilla C. Common and rare variants in multifactorial susceptibility to common diseases. Nat Genet 2008, 40:695-701. 10.1038/ng.f.136, 2527050, 18509313.
    • (2008) Nat Genet , vol.40 , pp. 695-701
    • Bodmer, W.1    Bonilla, C.2
  • 3
    • 76649136928 scopus 로고    scopus 로고
    • An evaluation of statistical approaches to rare variant analysis in genetic association studies
    • 10.1002/gepi.20450, 2962811, 19810025
    • Morris AP, Zeggini E. An evaluation of statistical approaches to rare variant analysis in genetic association studies. Genet Epidemiol 2010, 34:188. 10.1002/gepi.20450, 2962811, 19810025.
    • (2010) Genet Epidemiol , vol.34 , pp. 188
    • Morris, A.P.1    Zeggini, E.2
  • 4
    • 40749128980 scopus 로고    scopus 로고
    • A unified association analysis approach for family and unrelated samples correcting for stratification
    • 10.1016/j.ajhg.2007.10.009, 2427300, 18252216
    • Zhu X, Li S, Cooper RS, Elston RC. A unified association analysis approach for family and unrelated samples correcting for stratification. Am J Hum Genet 2008, 82:352-365. 10.1016/j.ajhg.2007.10.009, 2427300, 18252216.
    • (2008) Am J Hum Genet , vol.82 , pp. 352-365
    • Zhu, X.1    Li, S.2    Cooper, R.S.3    Elston, R.C.4
  • 5
    • 50949095168 scopus 로고    scopus 로고
    • Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data
    • 10.1016/j.ajhg.2008.06.024, 2842185, 18691683
    • Li B, Leal SM. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am J Hum Genet 2008, 83:311-321. 10.1016/j.ajhg.2008.06.024, 2842185, 18691683.
    • (2008) Am J Hum Genet , vol.83 , pp. 311-321
    • Li, B.1    Leal, S.M.2
  • 6
    • 61449168010 scopus 로고    scopus 로고
    • A groupwise association test for rare mutations using a weighted sum statistic
    • 10.1371/journal.pgen.1000384, 2633048, 19214210
    • Madsen BE, Browning SR. A groupwise association test for rare mutations using a weighted sum statistic. PLoS Genet 2009, 5:e1000384. 10.1371/journal.pgen.1000384, 2633048, 19214210.
    • (2009) PLoS Genet , vol.5
    • Madsen, B.E.1    Browning, S.R.2
  • 7
    • 77951028197 scopus 로고    scopus 로고
    • A data-adaptive sum test for disease association with multiple common or rare variants
    • 10.1159/000288704, 2912645, 20413981
    • Han F, Pan W. A data-adaptive sum test for disease association with multiple common or rare variants. Hum Hered 2010, 70:42-54. 10.1159/000288704, 2912645, 20413981.
    • (2010) Hum Hered , vol.70 , pp. 42-54
    • Han, F.1    Pan, W.2
  • 8
    • 78249243049 scopus 로고    scopus 로고
    • Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes
    • 10.1016/j.ajhg.2010.10.012, 2978957, 21070896
    • Zawistowski M, Gopalakrishnan S, Ding J, Li Y, Grimm S, Zöllner S. Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes. Am J Hum Genet 2010, 87:604-617. 10.1016/j.ajhg.2010.10.012, 2978957, 21070896.
    • (2010) Am J Hum Genet , vol.87 , pp. 604-617
    • Zawistowski, M.1    Gopalakrishnan, S.2    Ding, J.3    Li, Y.4    Grimm, S.5    Zöllner, S.6
  • 10
    • 79958077854 scopus 로고    scopus 로고
    • Detecting rare and common variants for complex traits: sibpair and odds ratio weighted sum statistics (SPWSS, ORWSS)
    • 10.1002/gepi.20588, 3114642, 21594893
    • Feng T, Elston RC, Zhu X. Detecting rare and common variants for complex traits: sibpair and odds ratio weighted sum statistics (SPWSS, ORWSS). Genet Epidemiol 2011, 35:398-409. 10.1002/gepi.20588, 3114642, 21594893.
    • (2011) Genet Epidemiol , vol.35 , pp. 398-409
    • Feng, T.1    Elston, R.C.2    Zhu, X.3
  • 11
    • 76649122154 scopus 로고    scopus 로고
    • Detecting rare variants for complex traits using family and unrelated data
    • 10.1002/gepi.20449, 2811752, 19847924
    • Zhu X, Feng T, Li Y, Lu Q, Elston RC. Detecting rare variants for complex traits using family and unrelated data. Genet Epidemiol 2010, 34:171-187. 10.1002/gepi.20449, 2811752, 19847924.
    • (2010) Genet Epidemiol , vol.34 , pp. 171-187
    • Zhu, X.1    Feng, T.2    Li, Y.3    Lu, Q.4    Elston, R.C.5
  • 12
    • 80054728031 scopus 로고    scopus 로고
    • Comparison of statistical tests for disease association with rare variants
    • 10.1002/gepi.20609, 3197766, 21769936
    • Basu S, Pan W. Comparison of statistical tests for disease association with rare variants. Genet Epidemiol 2011, 35:606-619. 10.1002/gepi.20609, 3197766, 21769936.
    • (2011) Genet Epidemiol , vol.35 , pp. 606-619
    • Basu, S.1    Pan, W.2
  • 13
    • 77953121307 scopus 로고    scopus 로고
    • Powerful SNP-Set analysis for case-control genome-wide association studies
    • 10.1016/j.ajhg.2010.05.002, 3032061, 20560208
    • Wu M, Kraft P, Epstein M, Taylor D, Chanock S, Hunter D, Lin X. Powerful SNP-Set analysis for case-control genome-wide association studies. Am J Hum Genet 2010, 86:929-942. 10.1016/j.ajhg.2010.05.002, 3032061, 20560208.
    • (2010) Am J Hum Genet , vol.86 , pp. 929-942
    • Wu, M.1    Kraft, P.2    Epstein, M.3    Taylor, D.4    Chanock, S.5    Hunter, D.6    Lin, X.7
  • 14
    • 80051499915 scopus 로고    scopus 로고
    • Rare variant association testing for sequencing data using the sequence kernel association test
    • 10.1016/j.ajhg.2011.05.029, 3135811, 21737059
    • Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X. Rare variant association testing for sequencing data using the sequence kernel association test. Am J Hum Genet 2011, 89:82-93. 10.1016/j.ajhg.2011.05.029, 3135811, 21737059.
    • (2011) Am J Hum Genet , vol.89 , pp. 82-93
    • Wu, M.C.1    Lee, S.2    Cai, T.3    Li, Y.4    Boehnke, M.5    Lin, X.6
  • 16
    • 78650856517 scopus 로고    scopus 로고
    • GCTA: a tool for genome-wide complex trait analysis
    • 10.1016/j.ajhg.2010.11.011, 3014363, 21167468
    • Yang J, Lee SH, Goddard ME, Visscher PM. GCTA: a tool for genome-wide complex trait analysis. Am J Hum Genet 2011, 88:76-82. 10.1016/j.ajhg.2010.11.011, 3014363, 21167468.
    • (2011) Am J Hum Genet , vol.88 , pp. 76-82
    • Yang, J.1    Lee, S.H.2    Goddard, M.E.3    Visscher, P.M.4
  • 17
    • 35348887757 scopus 로고    scopus 로고
    • Haplotype-based association analysis via variance-components score test
    • 10.1086/521558, 2265651, 17924336
    • Tzeng JY, Zhang D. Haplotype-based association analysis via variance-components score test. Am J Hum Genet 2007, 81:927-938. 10.1086/521558, 2265651, 17924336.
    • (2007) Am J Hum Genet , vol.81 , pp. 927-938
    • Tzeng, J.Y.1    Zhang, D.2
  • 18
    • 68549128324 scopus 로고    scopus 로고
    • Gene trait similarity regression for multimarker based association analysis
    • 10.1111/j.1541-0420.2008.01176.x, 2748404, 19210740
    • Tzeng JY, Zhang D, Chang SM, Thomas DC, Davidian M. Gene trait similarity regression for multimarker based association analysis. Biometrics 2009, 65:822-832. 10.1111/j.1541-0420.2008.01176.x, 2748404, 19210740.
    • (2009) Biometrics , vol.65 , pp. 822-832
    • Tzeng, J.Y.1    Zhang, D.2    Chang, S.M.3    Thomas, D.C.4    Davidian, M.5
  • 19
    • 45149105926 scopus 로고    scopus 로고
    • Efficient control of population structure in model organism association mapping
    • 10.1534/genetics.107.080101, 2278096, 18385116
    • Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E. Efficient control of population structure in model organism association mapping. Genetics 2008, 178:1709-1723. 10.1534/genetics.107.080101, 2278096, 18385116.
    • (2008) Genetics , vol.178 , pp. 1709-1723
    • Kang, H.M.1    Zaitlen, N.A.2    Wade, C.M.3    Kirby, A.4    Heckerman, D.5    Daly, M.J.6    Eskin, E.7
  • 20
    • 0000072057 scopus 로고    scopus 로고
    • Variance component testing in generalised linear models with random effects
    • Lin X. Variance component testing in generalised linear models with random effects. Biometrika 1997, 84:309.
    • (1997) Biometrika , vol.84 , pp. 309
    • Lin, X.1
  • 21
    • 0141767032 scopus 로고    scopus 로고
    • Hypothesis testing in semiparametric additive mixed models
    • 10.1093/biostatistics/4.1.57, 12925330
    • Zhang D, Lin X. Hypothesis testing in semiparametric additive mixed models. Biostatistics 2003, 4:57-74. 10.1093/biostatistics/4.1.57, 12925330.
    • (2003) Biostatistics , vol.4 , pp. 57-74
    • Zhang, D.1    Lin, X.2
  • 22
    • 58549103276 scopus 로고    scopus 로고
    • A new chi-square approximation to the distribution of non-negative definite quadratic forms in non-central normal variables
    • Liu H, Tang Y, Zhang HH. A new chi-square approximation to the distribution of non-negative definite quadratic forms in non-central normal variables. Comput Stat Data Anal 2009, 53:853-856.
    • (2009) Comput Stat Data Anal , vol.53 , pp. 853-856
    • Liu, H.1    Tang, Y.2    Zhang, H.H.3
  • 23
    • 0001008882 scopus 로고
    • Algorithm AS 155: the distribution of a linear combination of 2 random variables
    • Davies RB. Algorithm AS 155: the distribution of a linear combination of 2 random variables. J R Stat Soc Ser C Appl Stat 1980, 29:323-333.
    • (1980) J R Stat Soc Ser C Appl Stat , vol.29 , pp. 323-333
    • Davies, R.B.1
  • 24
    • 0041337276 scopus 로고
    • Algorithm AS 204: the distribution of a positive linear combination of 2 random variables
    • Farebrother R. Algorithm AS 204: the distribution of a positive linear combination of 2 random variables. J R Stat Soc Ser C Appl Stat 1984, 33:332-339.
    • (1984) J R Stat Soc Ser C Appl Stat , vol.33 , pp. 332-339
    • Farebrother, R.1
  • 25
    • 0001507590 scopus 로고
    • Computing the distribution of quadratic forms in normal variables
    • Imhof J. Computing the distribution of quadratic forms in normal variables. Biometrika 1961, 48:419-426.
    • (1961) Biometrika , vol.48 , pp. 419-426
    • Imhof, J.1
  • 26
    • 73149087027 scopus 로고    scopus 로고
    • Computing the distribution of quadratic forms: further comparisons between the Liu-tang-zhang approximation and exact methods
    • Duchesne P, Lafaye De Micheaux P. Computing the distribution of quadratic forms: further comparisons between the Liu-tang-zhang approximation and exact methods. Comput Stat Data Anal 2010, 54:858-862.
    • (2010) Comput Stat Data Anal , vol.54 , pp. 858-862
    • Duchesne, P.1    Lafaye De Micheaux, P.2
  • 27
    • 40749104728 scopus 로고    scopus 로고
    • A powerful and flexible multilocus association test for quantitative traits
    • 10.1016/j.ajhg.2007.10.010, 2664991, 18252219
    • Kwee L, Liu D, Lin X, Ghosh D, Epstein M. A powerful and flexible multilocus association test for quantitative traits. Am J Hum Genet 2008, 82:386-397. 10.1016/j.ajhg.2007.10.010, 2664991, 18252219.
    • (2008) Am J Hum Genet , vol.82 , pp. 386-397
    • Kwee, L.1    Liu, D.2    Lin, X.3    Ghosh, D.4    Epstein, M.5
  • 28
    • 36749013671 scopus 로고    scopus 로고
    • Semiparametric Regression of Multidimensional Genetic Pathway Data: Least-Squares Kernel Machines and Linear Mixed Models
    • 10.1111/j.1541-0420.2007.00799.x, 2665800, 18078480
    • Liu D, Lin X, Ghosh D. Semiparametric Regression of Multidimensional Genetic Pathway Data: Least-Squares Kernel Machines and Linear Mixed Models. Biometrics 2007, 63:1079-1088. 10.1111/j.1541-0420.2007.00799.x, 2665800, 18078480.
    • (2007) Biometrics , vol.63 , pp. 1079-1088
    • Liu, D.1    Lin, X.2    Ghosh, D.3
  • 29
    • 79953686237 scopus 로고    scopus 로고
    • A rapid generalized least squares model for a genome-wide quantitative trait association analysis in families
    • 10.1159/000324839, 3080778, 21474944
    • Li X, Basu S, Miller MB, Iacono W, McGue M. A rapid generalized least squares model for a genome-wide quantitative trait association analysis in families. Hum Hered 2011, 71:67-82. 10.1159/000324839, 3080778, 21474944.
    • (2011) Hum Hered , vol.71 , pp. 67-82
    • Li, X.1    Basu, S.2    Miller, M.B.3    Iacono, W.4    McGue, M.5


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