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Volumn 20, Issue 2, 2013, Pages 232-240

Deglycosylation as a mechanism of inducible antibiotic resistance revealed using a global relational tree for one-component regulators

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOSIDASE; HYDROXYL GROUP; SPACER DNA;

EID: 84874341859     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2012.11.011     Document Type: Article
Times cited : (24)

References (52)
  • 1
    • 84870604440 scopus 로고    scopus 로고
    • Genome context as a predictive tool for identifying regulatory Targets of the TetR family transcriptional regulators
    • S.K. Ahn, L. Cuthbertson, and J.R. Nodwell Genome context as a predictive tool for identifying regulatory Targets of the TetR family transcriptional regulators PLoS One 7 2012 e50562
    • (2012) PLoS One , vol.7 , pp. 50562
    • Ahn, S.K.1    Cuthbertson, L.2    Nodwell, J.R.3
  • 3
    • 0020595444 scopus 로고
    • Overlapping divergent promoters control expression of Tn10 tetracycline resistance
    • K.P. Bertrand, K. Postle, L.V. Wray Jr., and W.S. Reznikoff Overlapping divergent promoters control expression of Tn10 tetracycline resistance Gene 23 1983 149 156
    • (1983) Gene , vol.23 , pp. 149-156
    • Bertrand, K.P.1    Postle, K.2    Wray, Jr.L.V.3    Reznikoff, W.S.4
  • 7
    • 0030911409 scopus 로고    scopus 로고
    • P-Cymene catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA encoding conversion of p-cymene to p-cumate
    • R.W. Eaton p-Cymene catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA encoding conversion of p-cymene to p-cumate J. Bacteriol. 179 1997 3171 3180
    • (1997) J. Bacteriol. , vol.179 , pp. 3171-3180
    • Eaton, R.W.1
  • 8
    • 0031976258 scopus 로고    scopus 로고
    • Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
    • J.A. Eisen Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis Genome Res. 8 1998 163 167
    • (1998) Genome Res. , vol.8 , pp. 163-167
    • Eisen, J.A.1
  • 9
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3.2)
    • J. Felsenstein PHYLIP-phylogeny inference package (version 3.2) Cladistics 5 1989 164 166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 10
    • 79953063344 scopus 로고    scopus 로고
    • Complex binding of the FabR repressor of bacterial unsaturated fatty acid biosynthesis to its cognate promoters
    • Y. Feng, and J.E. Cronan Complex binding of the FabR repressor of bacterial unsaturated fatty acid biosynthesis to its cognate promoters Mol. Microbiol. 80 2011 195 218
    • (2011) Mol. Microbiol. , vol.80 , pp. 195-218
    • Feng, Y.1    Cronan, J.E.2
  • 11
    • 0036731699 scopus 로고    scopus 로고
    • Listening in on bacteria: Acyl-homoserine lactone signalling
    • C. Fuqua, and E.P. Greenberg Listening in on bacteria: acyl-homoserine lactone signalling Nat. Rev. Mol. Cell Biol. 3 2002 685 695
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , pp. 685-695
    • Fuqua, C.1    Greenberg, E.P.2
  • 12
    • 0028030082 scopus 로고
    • Mechanisms underlying expression of Tn10 encoded tetracycline resistance
    • W. Hillen, and C. Berens Mechanisms underlying expression of Tn10 encoded tetracycline resistance Annu. Rev. Microbiol. 48 1994 345 369
    • (1994) Annu. Rev. Microbiol. , vol.48 , pp. 345-369
    • Hillen, W.1    Berens, C.2
  • 13
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • D.H. Huson, and D. Bryant Application of phylogenetic networks in evolutionary studies Mol. Biol. Evol. 23 2006 254 267
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 15
    • 41549144323 scopus 로고    scopus 로고
    • The DNA-binding domain as a functional indicator: The case of the AraC/XylS family of transcription factors
    • J.A. Ibarra, E. Pérez-Rueda, L. Segovia, and J.L. Puente The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors Genetica 133 2008 65 76
    • (2008) Genetica , vol.133 , pp. 65-76
    • Ibarra, J.A.1    Pérez-Rueda, E.2    Segovia, L.3    Puente, J.L.4
  • 16
    • 79959855802 scopus 로고    scopus 로고
    • A finely tuned regulatory circuit of the nicotinic acid degradation pathway in Pseudomonas putida
    • J.I. Jiménez, J.F. Juárez, J.L. García, and E. Díaz A finely tuned regulatory circuit of the nicotinic acid degradation pathway in Pseudomonas putida Environ. Microbiol. 13 2011 1718 1732
    • (2011) Environ. Microbiol. , vol.13 , pp. 1718-1732
    • Jiménez, J.I.1    Juárez, J.F.2    García, J.L.3    Díaz, E.4
  • 20
    • 49749126041 scopus 로고    scopus 로고
    • Sweet antibiotics - The role of glycosidic residues in antibiotic and antitumor activity and their randomization
    • V. Kren, and T. Rezanka Sweet antibiotics - the role of glycosidic residues in antibiotic and antitumor activity and their randomization FEMS Microbiol. Rev. 32 2008 858 889
    • (2008) FEMS Microbiol. Rev. , vol.32 , pp. 858-889
    • Kren, V.1    Rezanka, T.2
  • 21
    • 66949169541 scopus 로고    scopus 로고
    • Coupling of the biosynthesis and export of the DNA gyrase inhibitor simocyclinone in Streptomyces antibioticus
    • T.B. Le, H.P. Fiedler, C.D. den Hengst, S.K. Ahn, A. Maxwell, and M.J. Buttner Coupling of the biosynthesis and export of the DNA gyrase inhibitor simocyclinone in Streptomyces antibioticus Mol. Microbiol. 72 2009 1462 1474
    • (2009) Mol. Microbiol. , vol.72 , pp. 1462-1474
    • Le, T.B.1    Fiedler, H.P.2    Den Hengst, C.D.3    Ahn, S.K.4    Maxwell, A.5    Buttner, M.J.6
  • 22
    • 79955767563 scopus 로고    scopus 로고
    • Crystal structures of the transcriptional repressor RolR reveals a novel recognition mechanism between inducer and regulator
    • D.F. Li, N. Zhang, Y.J. Hou, Y. Huang, Y. Hu, Y. Zhang, S.J. Liu, and D.C. Wang Crystal structures of the transcriptional repressor RolR reveals a novel recognition mechanism between inducer and regulator PLoS ONE 6 2011 e19529
    • (2011) PLoS ONE , vol.6 , pp. 19529
    • Li, D.F.1    Zhang, N.2    Hou, Y.J.3    Huang, Y.4    Hu, Y.5    Zhang, Y.6    Liu, S.J.7    Wang, D.C.8
  • 24
    • 34247145507 scopus 로고    scopus 로고
    • Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation
    • H. Matsuoka, K. Hirooka, and Y. Fujita Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation J. Biol. Chem. 282 2007 5180 5194
    • (2007) J. Biol. Chem. , vol.282 , pp. 5180-5194
    • Matsuoka, H.1    Hirooka, K.2    Fujita, Y.3
  • 25
    • 78149445856 scopus 로고    scopus 로고
    • The genomic enzymology of antibiotic resistance
    • M. Morar, and G.D. Wright The genomic enzymology of antibiotic resistance Annu. Rev. Genet. 44 2010 25 51
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 25-51
    • Morar, M.1    Wright, G.D.2
  • 26
    • 0020415474 scopus 로고
    • Tetrocarcins, new antitumor antibiotics. 3. Antitumor activity of tetrocarcin A
    • M. Morimoto, M. Fukui, S. Ohkubo, T. Tamaoki, and F. Tomita Tetrocarcins, new antitumor antibiotics. 3. Antitumor activity of tetrocarcin A J. Antibiot. 35 1982 1033 1037
    • (1982) J. Antibiot. , vol.35 , pp. 1033-1037
    • Morimoto, M.1    Fukui, M.2    Ohkubo, S.3    Tamaoki, T.4    Tomita, F.5
  • 27
    • 0033815868 scopus 로고    scopus 로고
    • Regulation of transcription of the mph(A) gene for macrolide 2′-phosphotransferase i in Escherichia coli: Characterization of the regulatory gene mphR(A)
    • N. Noguchi, K. Takada, J. Katayama, A. Emura, and M. Sasatsu Regulation of transcription of the mph(A) gene for macrolide 2′-phosphotransferase I in Escherichia coli: characterization of the regulatory gene mphR(A) J. Bacteriol. 182 2000 5052 5058
    • (2000) J. Bacteriol. , vol.182 , pp. 5052-5058
    • Noguchi, N.1    Takada, K.2    Katayama, J.3    Emura, A.4    Sasatsu, M.5
  • 28
    • 0029032670 scopus 로고
    • Virginiae butanolide binding protein from Streptomyces virginiae. Evidence that VbrA is not the virginiae butanolide binding protein and reidentification of the true binding protein
    • S. Okamoto, K. Nakamura, T. Nihira, and Y. Yamada Virginiae butanolide binding protein from Streptomyces virginiae. Evidence that VbrA is not the virginiae butanolide binding protein and reidentification of the true binding protein J. Biol. Chem. 270 1995 12319 12326
    • (1995) J. Biol. Chem. , vol.270 , pp. 12319-12326
    • Okamoto, S.1    Nakamura, K.2    Nihira, T.3    Yamada, Y.4
  • 29
    • 0028834241 scopus 로고
    • Cloning and characterization of the A-factor receptor gene from Streptomyces griseus
    • H. Onaka, N. Ando, T. Nihira, Y. Yamada, T. Beppu, and S. Horinouchi Cloning and characterization of the A-factor receptor gene from Streptomyces griseus J. Bacteriol. 177 1995 6083 6092
    • (1995) J. Bacteriol. , vol.177 , pp. 6083-6092
    • Onaka, H.1    Ando, N.2    Nihira, T.3    Yamada, Y.4    Beppu, T.5    Horinouchi, S.6
  • 30
    • 0034087676 scopus 로고    scopus 로고
    • Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system
    • P. Orth, D. Schnappinger, W. Hillen, W. Saenger, and W. Hinrichs Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system Nat. Struct. Biol. 7 2000 215 219
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 215-219
    • Orth, P.1    Schnappinger, D.2    Hillen, W.3    Saenger, W.4    Hinrichs, W.5
  • 33
    • 79952155643 scopus 로고    scopus 로고
    • MarR homologs with urate-binding signature
    • I.C. Perera, and A. Grove MarR homologs with urate-binding signature Protein Sci. 20 2011 621 629
    • (2011) Protein Sci. , vol.20 , pp. 621-629
    • Perera, I.C.1    Grove, A.2
  • 34
    • 0033923529 scopus 로고    scopus 로고
    • Cloning of genes participating in aerobic biodegradation of p-cumate from Rhodopseudomonas palustris
    • L.G. Puskás, M. Inui, Z. Kele, and H. Yukawa Cloning of genes participating in aerobic biodegradation of p-cumate from Rhodopseudomonas palustris DNA Seq. 11 2000 9 20
    • (2000) DNA Seq. , vol.11 , pp. 9-20
    • Puskás, L.G.1    Inui, M.2    Kele, Z.3    Yukawa, H.4
  • 36
    • 27244455921 scopus 로고    scopus 로고
    • Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces
    • A. Rodríguez-García, P. Combes, R. Pérez-Redondo, M.C. Smith, and M.C. Smith Natural and synthetic tetracycline-inducible promoters for use in the antibiotic-producing bacteria Streptomyces Nucleic Acids Res. 33 2005 e87
    • (2005) Nucleic Acids Res. , vol.33 , pp. 87
    • Rodríguez-García, A.1    Combes, P.2    Pérez-Redondo, R.3    Smith, M.C.4    Smith, M.C.5
  • 37
    • 80052322974 scopus 로고    scopus 로고
    • Phenylacetyl coenzyme A is an effector molecule of the TetR family transcriptional repressor PaaR from Thermus thermophilus HB8
    • K. Sakamoto, Y. Agari, S. Kuramitsu, and A. Shinkai Phenylacetyl coenzyme A is an effector molecule of the TetR family transcriptional repressor PaaR from Thermus thermophilus HB8 J. Bacteriol. 193 2011 4388 4395
    • (2011) J. Bacteriol. , vol.193 , pp. 4388-4395
    • Sakamoto, K.1    Agari, Y.2    Kuramitsu, S.3    Shinkai, A.4
  • 38
    • 0347695993 scopus 로고    scopus 로고
    • Characterization of HdnoR, the transcriptional repressor of the 6-hydroxy-D-nicotine oxidase gene of Arthrobacter nicotinovorans pAO1, and its DNA-binding activity in response to L- and D-nicotine Derivatives
    • C. Sandu, C.B. Chiribau, and R. Brandsch Characterization of HdnoR, the transcriptional repressor of the 6-hydroxy-D-nicotine oxidase gene of Arthrobacter nicotinovorans pAO1, and its DNA-binding activity in response to L- and D-nicotine Derivatives J. Biol. Chem. 278 2003 51307 51315
    • (2003) J. Biol. Chem. , vol.278 , pp. 51307-51315
    • Sandu, C.1    Chiribau, C.B.2    Brandsch, R.3
  • 39
    • 47249152834 scopus 로고    scopus 로고
    • The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions
    • T. Shimada, A. Ishihama, S.J. Busby, and D.C. Grainger The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions Nucleic Acids Res. 36 2008 3950 3955
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3950-3955
    • Shimada, T.1    Ishihama, A.2    Busby, S.J.3    Grainger, D.C.4
  • 40
    • 0029959768 scopus 로고    scopus 로고
    • Purification and characterization of an extracellular peptide factor that affects two different developmental pathways in Bacillus subtilis
    • J.M. Solomon, B.A. Lazazzera, and A.D. Grossman Purification and characterization of an extracellular peptide factor that affects two different developmental pathways in Bacillus subtilis Genes Dev. 10 1996 2014 2024
    • (1996) Genes Dev. , vol.10 , pp. 2014-2024
    • Solomon, J.M.1    Lazazzera, B.A.2    Grossman, A.D.3
  • 41
    • 79251577109 scopus 로고    scopus 로고
    • Unusual regulation of a leaderless operon involved in the catabolism of dimethylsulfoniopropionate in Rhodobacter sphaeroides
    • M.J. Sullivan, A.R. Curson, N. Shearer, J.D. Todd, R.T. Green, and A.W. Johnston Unusual regulation of a leaderless operon involved in the catabolism of dimethylsulfoniopropionate in Rhodobacter sphaeroides PLoS ONE 6 2011 e15972
    • (2011) PLoS ONE , vol.6 , pp. 15972
    • Sullivan, M.J.1    Curson, A.R.2    Shearer, N.3    Todd, J.D.4    Green, R.T.5    Johnston, A.W.6
  • 43
    • 33744552662 scopus 로고    scopus 로고
    • Gamma-butyrolactones: Streptomyces signalling molecules regulating antibiotic production and differentiation
    • E. Takano Gamma-butyrolactones: Streptomyces signalling molecules regulating antibiotic production and differentiation Curr. Opin. Microbiol. 9 2006 287 294
    • (2006) Curr. Opin. Microbiol. , vol.9 , pp. 287-294
    • Takano, E.1
  • 44
    • 20244388405 scopus 로고    scopus 로고
    • A bacterial hormone (the SCB1) directly controls the expression of a pathway-specific regulatory gene in the cryptic type i polyketide biosynthetic gene cluster of Streptomyces coelicolor
    • E. Takano, H. Kinoshita, V. Mersinias, G. Bucca, G. Hotchkiss, T. Nihira, C.P. Smith, M. Bibb, W. Wohlleben, and K. Chater A bacterial hormone (the SCB1) directly controls the expression of a pathway-specific regulatory gene in the cryptic type I polyketide biosynthetic gene cluster of Streptomyces coelicolor Mol. Microbiol. 56 2005 465 479
    • (2005) Mol. Microbiol. , vol.56 , pp. 465-479
    • Takano, E.1    Kinoshita, H.2    Mersinias, V.3    Bucca, G.4    Hotchkiss, G.5    Nihira, T.6    Smith, C.P.7    Bibb, M.8    Wohlleben, W.9    Chater, K.10
  • 45
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 12944325784 scopus 로고    scopus 로고
    • One-component systems dominate signal transduction in prokaryotes
    • L.E. Ulrich, E.V. Koonin, and I.B. Zhulin One-component systems dominate signal transduction in prokaryotes Trends Microbiol. 13 2005 52 56
    • (2005) Trends Microbiol. , vol.13 , pp. 52-56
    • Ulrich, L.E.1    Koonin, E.V.2    Zhulin, I.B.3
  • 48
    • 0019799763 scopus 로고
    • Kijanimicin (Sch 25663), a novel antibiotic produced by Actinomadura kijaniata SCC 1256. Fermentation, isolation, characterization and biological properties
    • J.A. Waitz, A.C. Horan, M. Kalyanpur, B.K. Lee, D. Loebenberg, J.A. Marquez, G. Miller, and M.G. Patel Kijanimicin (Sch 25663), a novel antibiotic produced by Actinomadura kijaniata SCC 1256. Fermentation, isolation, characterization and biological properties J. Antibiot. 34 1981 1101 1106
    • (1981) J. Antibiot. , vol.34 , pp. 1101-1106
    • Waitz, J.A.1    Horan, A.C.2    Kalyanpur, M.3    Lee, B.K.4    Loebenberg, D.5    Marquez, J.A.6    Miller, G.7    Patel, M.G.8
  • 49
    • 84868368528 scopus 로고    scopus 로고
    • A two-step mechanism for the activation of actinorhodin export and resistance in Streptomyces coelicolor
    • e00191-12
    • Y. Xu, A. Willems, C. Au-Yeung, K. Tahlan, and J.R. Nodwell A two-step mechanism for the activation of actinorhodin export and resistance in Streptomyces coelicolor MBio. 3 2012 e00191-12
    • (2012) MBio. , vol.3
    • Xu, Y.1    Willems, A.2    Au-Yeung, C.3    Tahlan, K.4    Nodwell, J.R.5
  • 50
    • 77954384737 scopus 로고    scopus 로고
    • A comprehensive analysis of structural and sequence conservation in the TetR family transcriptional regulators
    • Z. Yu, S.E. Reichheld, A. Savchenko, J. Parkinson, and A.R. Davidson A comprehensive analysis of structural and sequence conservation in the TetR family transcriptional regulators J. Mol. Biol. 400 2010 847 864
    • (2010) J. Mol. Biol. , vol.400 , pp. 847-864
    • Yu, Z.1    Reichheld, S.E.2    Savchenko, A.3    Parkinson, J.4    Davidson, A.R.5
  • 51
    • 36749055680 scopus 로고    scopus 로고
    • Elucidation of the kijanimicin gene cluster: Insights into the biosynthesis of spirotetronate antibiotics and nitrosugars
    • H. Zhang, J.A. White-Phillip, C.E. Melançon 3rd, H.J. Kwon, W.L. Yu, and H.W. Liu Elucidation of the kijanimicin gene cluster: insights into the biosynthesis of spirotetronate antibiotics and nitrosugars J. Am. Chem. Soc. 129 2007 14670 14683
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 14670-14683
    • Zhang, H.1    White-Phillip, J.A.2    Melançon III, C.E.3    Kwon, H.J.4    Yu, W.L.5    Liu, H.W.6
  • 52
    • 35448940589 scopus 로고    scopus 로고
    • A Pseudomonas aeruginosa transcription factor that senses fatty acid structure
    • Y.M. Zhang, K. Zhu, M.W. Frank, and C.O. Rock A Pseudomonas aeruginosa transcription factor that senses fatty acid structure Mol. Microbiol. 66 2007 622 632
    • (2007) Mol. Microbiol. , vol.66 , pp. 622-632
    • Zhang, Y.M.1    Zhu, K.2    Frank, M.W.3    Rock, C.O.4


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