Comparative analysis of barley leaf proteome as affected by drought stress

Planta

Volumn 237, Issue 3, 2013, Pages 771-781

  Ashoub, Ahmed ^a,b,c   Beckhaus, Tobias ^c   Berberich, Thomas ^a   Karas, Michael ^c   Brüggemann, Wolfgang ^a,c  

^a BIODIVERSITY AND CLIMATE RESEARCH CENTRE BIK F   (Germany)

^b Agricultural Research Centre   (Egypt)

^c GOETHE UNIVERSITY   (Germany)

Author keywords

Barley; Difference gel electrophoresis (DIGE); Drought stress; MALDI TOF MS; Performance index; Proteome analysis

Indexed keywords

HORDEUM;

EID: 84874325073     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-012-1798-4     Document Type: Article

References (65)

1. Ahmed IA (2005) Highlights of the barley breeding program in Egypt. In: Grando S, Macpherson HG (eds) Food barley: Importance, uses and local knowledge. Proceeding international workshop on food barley improvement, 14-17 January 2002, Hammamet, Tunisia. ICARDA, Aleppo, Syria, pp 1-6.
2. Anjum SA, Xie X, Wang L, Saleem MF, Man C, Lei W (2011) Morphological, physiological and biochemical responses of plants to drought stress. Afr J Agr Res 6: 2026-2032.
3. Arsene F, Tomoyasu T, Bukau B (2000) The heat shock response of Escherichia coli. Int J Food Microbiol 55: 3-9.
4. Aubry S, Brown NJ, Hibberd JM (2011) The role of proteins in C3 plants prior to their recruitment into the C4 pathway. J Exp Bot 62: 3049-3059.
5. Bailey-Serres J (1999) Selective translation of cytoplasmic mRNAs in plants. Trends Plant Sci 4: 142-148.
6. Boyer JS (1982) Plant productivity and environment. Science 218: 443-448.
7. Bradford MM (1976) Rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
8. Cazalé AC, Clement M, Chiarenza S, Roncato MA et al (2009) Altered expression of cytosolic/nuclear HSC70-1 molecular chaperone affects development and abiotic stress tolerance in Arabidopsis thaliana. J Exp Bot 60: 2653-2664.
9. Chao WS, Gu YQ, Pautot V, Bray EA, Walling LL (1999) Leucine aminopeptidase RNAs, proteins, and activities increase in response to water deficit, salinity, and the wound signals systemin, methyl jasmonate, and abscisic acid. Plant Physiol 120: 979-992.
10. Clèment M, Leonhardt N, Droillard M, Reiter I et al (2011) The cytosolic/nuclear HSC70 and HSP90 molecular chaperones are important for stomatal closure and modulate abscisic acid-dependent physiological responses in Arabidopsis. Plant Physiol 156: 1481-1492.
11. Corvey C, Koetter P, Beckhaus T, Hack J et al (2005) Carbon source-dependent assembly of the Snf1p kinase complex in Candida albicans. J Biol Chem 280: 25323-25330.
12. Fitzgerald TL, Waters DLE, Henry RJ (2009) Betaine aldehyde dehydrogenase in plants. Plant Biol 11: 119-130.
13. Flexas J, Medrano H (2002) Drought-inhibition of photosynthesis in C3 plants: stomatal and non-stomatal limitations revisited. Ann Bot 89: 183-189.
14. Flexas J, Bota J, Galmés J, Medrano H, Ribas-Carbó M (2006a) Keeping a positive carbon balance under adverse conditions: responses of photosynthesis and respiration to water stress. Physiol Plant 127: 343-352.
15. 2 concentration. New Phytol 172: 73-82.
16. Frydman J (2001) Folding of newly translated proteins in vivo: the role of molecular chaperones. Annu Rev Biochem 70: 603-647.
17. Fu ZY, Zhang ZB, Liu ZH, Hu XJ, Xu P (2011) The effects of abiotic stresses on the NADP-dependent malic enzyme in the leaves of the hexaploid wheat. Biol Plant 55: 196-200.
18. Gao F, Zhou YJ, Zhu WP, Li XF et al (2009) Proteomic analysis of cold stress-responsive proteins in Thellungiella rosette leaves. Planta 230: 1033-1046.
19. Gerrard-Wheeler MC, Arias CL, Tronconi MA, Maurino VG et al (2008) Arabidopsis thaliana NADP-malic enzyme isoforms: high degree of identity but clearly distinct properties. Plant Mol Biol 67: 231-242.
20. Guo P, Baum M, Grando S, Ceccarelli S et al (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. J Exp Bot 60: 3531-3544.
21. Jedmowski C, Ashoub A, Brüggemann W (2012) Reactions of Egyptian landraces of Hordeum vulgare and Sorghum bicolor to drought stress, evaluated by the OJIP fluorescence transient analysis. Acta Physiol Plant. doi: 10. 1007/s11738-012-1077-9.
22. Kotchoni SO, Bartels D (2003) Water stress induces the up-regulation of a specific set of genes in plants: aldehyde dehydrogenase as an example. Bulg J Plant Physiol, Special Issue 2003: 37-51.
23. Krause GH, Weis E (1991) Chlorophyll fluorescence and photosynthesis: the basics. Annu Rev Plant Physiol Plant Mol Biol 42: 313-349.
24. Krishna P, Gloor G (2001) The Hsp90 family of proteins in Arabidopsis thaliana. Cell Stress Chaperones 6: 238-246.
25. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
26. 2 fixation and carboxylation capacity. Photosynth Res 49: 57-69.
27. Larkindale J, Vierling E (2008) Core genome responses involved in acclimation to high temperature. Plant Physiol 146: 748-761.
28. Lobell DB, Schlenker W, Costa-Roberts J (2011) Climate trends and global crop production since 1980. Science 333: 616-620.
29. Mahajan S, Tuteja N (2005) Cold, salinity and drought stresses: an overview. Arch Biochem Biophys 444: 139-158.
30. Mèchin V, DamervalC Zivy M (2006) Total protein extraction with TCA-acetone methods. Mol Biol 355: 1-8.
31. Merewitz EB, Gianfagna T, Huang B (2011) Protein accumulation in leaves and roots associated with improved drought tolerance in creeping bentgrass expressing an ipt gene for cytokinin synthesis. J Exp Bot 62: 5311-5333.
32. Mewes HW, Albermann K, Bähr M, Frishman D et al (1997) Overview of the yeast genome. Nature 387(Suppl. 6632): 7-65.
33. Milioni D, Hatzopoulos P (1997) Genomic organization of Hsp90 gene family in Arabidopsis. Plant Mol Biol 35: 955-961.
34. Moeder W, del Pozo O, Navarre D, Martin GB, Klessig DF (2007) Aconitase plays a role in regulating resistance to oxidative stress and cell death in Arabidopsis and Nicotiana benthamiana. Plant Mol Biol 63: 273-287.
35. Narita Y, Taguchi H, Nakamura T, Ueda A et al (2004) Characterization of the salt-inducible methionine synthase from barley leaves. Plant Sci 167: 1009-1016.
36. Ndimba BK, Chivasa S, Simon WJ, Slabas AR (2005) Identification of Arabidopsis salt and osmotic stress responsive proteins using two dimensional difference gel electrophoresis and mass spectrometry. Proteomics 5: 4185-4196.
37. Noël LD, Cagna G, Stuttmann J, Wirthmuller L et al (2007) Interaction between SGT1 and cytosolic/nuclear HSC70 chaperones regulates Arabidopsis immune responses. Plant Cell 19: 4061-4076.
38. Oukarroum A, Strasser RJ (2004) Phenotyping of dark and light adapted barley plants by the fast chlorophyll a fluorescence rise OJIP. S Afr J Bot 70: 277-283.
39. Oukarroum A, El Madidi S, Schansker G, Strasser RJ (2007) Probing the responses of barley cultivars (Hordeum vulgare L.) by chlorophyll a fluorescence OLKJIP under drought stress and re-watering. Environ Exp Bot 60: 438-446.
40. Parry MAJ, Andralojc PJ, Khan S, Lea PJ, Keys AJ (2002) Rubisco activity: effects of drought stress. Ann Bot 89: 833-839.
41. Pracharoenwattana I, Cornah JE, Smith SM (2007) Arabidopsis peroxisomal malate dehydrogenase functions in beta-oxidation but not in the glyoxylate cycle. Plant J 50: 381-390.
42. Qin F, Shinozaki K, Yamaguchi-Shinozaki K (2011) Achievements and challenges in understanding plant abiotic stress responses and tolerance. Plant Cell Physiol 52: 1569-1582.
43. Rosenfeld J, Capdevielle J, Guileemot JC, Ferrara P (1992) In-gel digestion of proteins for internal sequence analysis after one or two-dimensional gel electrophoresis. Anal Biochem 203: 173-179.
44. Saeedipour S (2011) Activities of sucrose-metabolizing enzymes in grains of two wheat (Triticum aestivum L.) cultivars subjected to water stress during grain filling. J Plant Breeding Crop Sci 3: 106-113.
45. Shao HB, Chu LY, Jaleel CA, Manivannan P et al (2009) Understanding water deficit stress-induced changes in the basic metabolism of higher plants-biotechnologically and sustainably improving agriculture and the ecoenvironment in arid regions of the globe. Crit Rev Biotechnol 29: 131-151.
46. Shevchenko A, Wilm M, Vorm O, Mann M (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 68: 850-858.
47. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58: 221-227.
48. Shirasu K (2009) The HSP90-SGT1 chaperone complex for NLR immune sensors. Annu Rev Plant Biol 60: 139-164.
49. Smart RE, Bingham GE (1974) Rapid estimates of relative water content. Plant Physiol 53: 258-260.
50. Song H, Zhao R, Fan P, Wang X et al (2009) Overexpression of AtHsp90. 2, AtHsp90. 5 and AtHsp90. 7 in Arabidopsis thaliana enhances plant sensitivity to salt and drought stresses. Planta 229: 955-964.
51. Strasser BJ, Strasser RJ (1995) Measuring fast fluorescence transients to address environmental questions: The JIP-test. In: Mathis P (ed) Photosynthesis: from light to biosphere, vol 5. Kluwer Academic Publishers, The Netherlands, pp 977-980.
52. Strasser RJ, Srivastava A, Tsimilli-Michael M (1999) Screening the vitality and photosynthetic activity of plants by fluorescent transient. In: Behl RK, Punia MS, Lather BPS (eds) Crop improvement for food security. SSARM, India, pp 72-115.
53. Swami AK, Alam SI, Sengupta N, Sarin R (2011) Differential proteomic analysis of salt stress response in Sorghum bicolor leaves. Environ Exp Bot 71: 321-328.
54. Talamè V, Ozturk NZ, Bohnert HJ, Tuberosa R (2007) Barley transcript profiles under dehydration shock and drought stress treatments: a comparative analysis. J Exp Bot 58: 229-240.
55. Taylor L, Nunes-Nesi A, Parsley K, Leiss A et al (2010) Cytosolic pyruvate, orthophosphate dikinase functions in nitrogen remobilisation during leaf senescence and limits individual seed growth and nitrogen content. Plant J 62: 641-652.
56. Tezara W, Mitchell VJ, Driscoll SD, Lawlor DW (1999) Water stress inhibits plant photosynthesis by decreasing coupling factor and ATP. Nature 401: 914-917.
57. Ting JP, Willingham SB, Bergstralh DT (2008) NLRs at the intersection of cell death and immunity. Nat Rev Immunol 8: 372-379.
58. Tommasini T, Svensson JT, Rodriguez EM, Wahid A et al (2008) Dehydrin gene expression provides an indicator of low temperature and drought stress: transcriptome-based analysis of barley (Hordeum vulgare L.). Funct Integr Genomics 8: 387-405.
59. Tuteja N (2007) Abscisic acid and abiotic stress signaling. Plant Signal Behav 2: 135-138.
60. Ueda A, Kathiresan A, Inada M, Narita Y et al (2004) Osmotic stress in barley regulates expression of a different set of genes than salt stress does. J Exp Bot 55: 2213-2218.
61. 2 assimilation. Environ Exp Bot 61: 124-136.
62. Wang W, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9: 244-252.
63. Xu C, Huang B (2010) Differential proteomic responses to water stress induced by PEG in two creeping bentgrass cultivars differing in stress tolerance. J Plant Physiol 167: 1477-1485.
64. Yan S, Tang Z, Su W, Sun W (2005) Proteomic analysis of salt stress-responsive proteins in rice root. Proteomics 5: 235-244.
65. Yoshimura K, Masuda A, Kuwano M, Yokota A, Akashi K (2008) Programmed proteome response for drought avoidance/tolerance in the root of a C3 xerophyte (wild watermelon) under water deficits. Plant Cell Physiol 49: 226-241.