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Volumn 237, Issue 3, 2013, Pages 823-836

Transcriptome sequencing of the Antarctic vascular plant Deschampsia antarctica Desv. under abiotic stress

Author keywords

Deschampsia antarctica; Extremophile; Hairgrass; Pyrosequencing; Stress response

Indexed keywords

DESCHAMPSIA ANTARCTICA; POACEAE; TRACHEOPHYTA;

EID: 84874294036     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-012-1797-5     Document Type: Article
Times cited : (32)

References (60)
  • 2
    • 17144365873 scopus 로고    scopus 로고
    • Characterization of antifreeze activity in Antarctic plants
    • Bravo LA, Griffith M (2005) Characterization of antifreeze activity in Antarctic plants. J Exp Bot 56: 1189-1196.
    • (2005) J Exp Bot , vol.56 , pp. 1189-1196
    • Bravo, L.A.1    Griffith, M.2
  • 4
    • 28244451860 scopus 로고    scopus 로고
    • Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis
    • Cao S, Ye M, Jiang S (2005) Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis. Plant Cell Rep 24: 683-690.
    • (2005) Plant Cell Rep , vol.24 , pp. 683-690
    • Cao, S.1    Ye, M.2    Jiang, S.3
  • 5
    • 0036137277 scopus 로고    scopus 로고
    • DNA sequence quality trimming and vector removal
    • Chou HH, Holmes MH (2001) DNA sequence quality trimming and vector removal. Bioinformatics 17: 1093-1104.
    • (2001) Bioinformatics , vol.17 , pp. 1093-1104
    • Chou, H.H.1    Holmes, M.H.2
  • 6
    • 70349579550 scopus 로고    scopus 로고
    • Terrestrial Antarctic ecosystems in the changing world: an overview
    • Chwedorzewska KJ (2009) Terrestrial Antarctic ecosystems in the changing world: an overview. Pol Polar Res 30: 263-276.
    • (2009) Pol Polar Res , vol.30 , pp. 263-276
    • Chwedorzewska, K.J.1
  • 7
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 9
    • 0034979962 scopus 로고    scopus 로고
    • The mitochondrial isovaleryl-coenzyme A dehydrogenase of Arabidopsis oxidizes intermediates of leucine and valine catabolism
    • Däschner K, Couée I, Binder S (2001) The mitochondrial isovaleryl-coenzyme A dehydrogenase of Arabidopsis oxidizes intermediates of leucine and valine catabolism. Plant Physiol 126: 601-612.
    • (2001) Plant Physiol , vol.126 , pp. 601-612
    • Däschner, K.1    Couée, I.2    Binder, S.3
  • 10
    • 77954299992 scopus 로고    scopus 로고
    • agriGO: a GO analysis toolkit for the agricultural community
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 38: W64-W70.
    • (2010) Nucleic Acids Res , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 12
    • 0024220161 scopus 로고
    • Photosynthesis and respiration of Colobanthus quitensis and Deschampsia antarctica from the maritime Antarctic
    • Edward JA, Lewis Smith RI (1988) Photosynthesis and respiration of Colobanthus quitensis and Deschampsia antarctica from the maritime Antarctic. BAS Bull 81: 43-63.
    • (1988) BAS Bull , vol.81 , pp. 43-63
    • Edward, J.A.1    Lewis Smith, R.I.2
  • 13
    • 27644568550 scopus 로고    scopus 로고
    • Anatomical features and ultrastructure of Deschampsia antarctica (Poaceae) leaves from different growing habitats
    • Gielwanowska I, Szczuka E, Bednara J, Gorecki R (2005) Anatomical features and ultrastructure of Deschampsia antarctica (Poaceae) leaves from different growing habitats. Ann Bot 96: 1109-1119.
    • (2005) Ann Bot , vol.96 , pp. 1109-1119
    • Gielwanowska, I.1    Szczuka, E.2    Bednara, J.3    Gorecki, R.4
  • 14
    • 78049474352 scopus 로고    scopus 로고
    • Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants
    • Gill SS, Tuteja N (2010) Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants. Plant Physiol Biochem 48: 909-930.
    • (2010) Plant Physiol Biochem , vol.48 , pp. 909-930
    • Gill, S.S.1    Tuteja, N.2
  • 15
    • 0037934476 scopus 로고    scopus 로고
    • Abiotic stresses affecting water balance induce phosphoenolpyruvate carboxylase expression in roots of wheat seedlings
    • González MC, Sánchez R, Cejudo FJ (2003) Abiotic stresses affecting water balance induce phosphoenolpyruvate carboxylase expression in roots of wheat seedlings. Planta 216: 985-992.
    • (2003) Planta , vol.216 , pp. 985-992
    • González, M.C.1    Sánchez, R.2    Cejudo, F.J.3
  • 16
    • 77449094136 scopus 로고    scopus 로고
    • Identification and molecular characterization of a Brachypodium distachyon GIGANTEA gene: functional conservation in monocot and dicot plants
    • Hong S-Y, Lee S, Seo P, Yang M-S, Park C-M (2010) Identification and molecular characterization of a Brachypodium distachyon GIGANTEA gene: functional conservation in monocot and dicot plants. Plant Mol Biol 72: 485-497.
    • (2010) Plant Mol Biol , vol.72 , pp. 485-497
    • Hong, S.-Y.1    Lee, S.2    Seo, P.3    Yang, M.-S.4    Park, C.-M.5
  • 17
    • 53549124095 scopus 로고    scopus 로고
    • Trehalose biosynthesis in response to abiotic stresses
    • Iordachescu M, Imai R (2008) Trehalose biosynthesis in response to abiotic stresses. J Integr Plant Biol 50: 1223-1229.
    • (2008) J Integr Plant Biol , vol.50 , pp. 1223-1229
    • Iordachescu, M.1    Imai, R.2
  • 20
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 21
    • 0036909761 scopus 로고    scopus 로고
    • Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
    • Kreps J, Wu Y, Chang H, Zhu T, Wang X, Harper J (2002) Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol 130: 2129-2141.
    • (2002) Plant Physiol , vol.130 , pp. 2129-2141
    • Kreps, J.1    Wu, Y.2    Chang, H.3    Zhu, T.4    Wang, X.5    Harper, J.6
  • 23
    • 44949255004 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of Antarctic hairgrass Deschampsia antarctica from King George Island, Antarctica
    • Lee H, Cho HH, Kim I-C, Yim JH, Lee HK, Lee YK (2008) Expressed sequence tag analysis of Antarctic hairgrass Deschampsia antarctica from King George Island, Antarctica. Mol Cells 25: 258-264.
    • (2008) Mol Cells , vol.25 , pp. 258-264
    • Lee, H.1    Cho, H.H.2    Kim, I.-C.3    Yim, J.H.4    Lee, H.K.5    Lee, Y.K.6
  • 24
    • 77958450090 scopus 로고    scopus 로고
    • Reference genes validation for qPCR normalization in Deschampsia antarctica during abiotic stresses
    • Lee H, Kim JH, Park M, Kim I-C, Yim JH, Lee HK (2010) Reference genes validation for qPCR normalization in Deschampsia antarctica during abiotic stresses. Antarct Sci 22: 477-484.
    • (2010) Antarct Sci , vol.22 , pp. 477-484
    • Lee, H.1    Kim, J.H.2    Park, M.3    Kim, I.-C.4    Yim, J.H.5    Lee, H.K.6
  • 25
    • 0028591525 scopus 로고
    • Vascular plants as bioindicators of regional warming in Antarctica
    • Lewis Smith RI (1994) Vascular plants as bioindicators of regional warming in Antarctica. Oecologia 99: 322-328.
    • (1994) Oecologia , vol.99 , pp. 322-328
    • Lewis Smith, R.I.1
  • 26
    • 1342265924 scopus 로고    scopus 로고
    • A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction
    • Lister R, Chew O, Lee MN, Heazlewood JL, Clifton R, Parker KL, Millar AH, Whelan J (2004) A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. Plant Physiol 134: 777-789.
    • (2004) Plant Physiol , vol.134 , pp. 777-789
    • Lister, R.1    Chew, O.2    Lee, M.N.3    Heazlewood, J.L.4    Clifton, R.5    Parker, K.L.6    Millar, A.H.7    Whelan, J.8
  • 28
    • 0001470138 scopus 로고
    • The osmotic potential of polyethylene glycol 6000
    • Michael BE, Kaufmann MR (1973) The osmotic potential of polyethylene glycol 6000. Plant Physiol 51: 914-916.
    • (1973) Plant Physiol , vol.51 , pp. 914-916
    • Michael, B.E.1    Kaufmann, M.R.2
  • 29
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30: 194-200.
    • (2002) Nat Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 30
    • 0032693585 scopus 로고    scopus 로고
    • Antisense suppression of proline degradation improves tolerance to freezing and salinity in Arabidopsis thaliana
    • Nanjo T, Kobayashi M, Yoshiba Y, Kakubari Y, Yamaguchi-Shinozaki K, Shinozaki K (1999) Antisense suppression of proline degradation improves tolerance to freezing and salinity in Arabidopsis thaliana. FEBS Lett 461: 205-210.
    • (1999) FEBS Lett , vol.461 , pp. 205-210
    • Nanjo, T.1    Kobayashi, M.2    Yoshiba, Y.3    Kakubari, Y.4    Yamaguchi-Shinozaki, K.5    Shinozaki, K.6
  • 32
    • 79955530030 scopus 로고    scopus 로고
    • The remarkable diversity of plant PEPC (phosphoenolpyruvate carboxylase): recent insights into the physiological functions and post-translational controls of non-photosynthetic PEPCs
    • O'Leary B, Park J, Plaxton WC (2011) The remarkable diversity of plant PEPC (phosphoenolpyruvate carboxylase): recent insights into the physiological functions and post-translational controls of non-photosynthetic PEPCs. Biochem J 436: 15-34.
    • (2011) Biochem J , vol.436 , pp. 15-34
    • O'Leary, B.1    Park, J.2    Plaxton, W.C.3
  • 34
    • 77951894310 scopus 로고    scopus 로고
    • Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
    • Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA (2010) Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics 11: 180.
    • (2010) BMC Genomics , vol.11 , pp. 180
    • Parchman, T.L.1    Geist, K.S.2    Grahnen, J.A.3    Benkman, C.W.4    Buerkle, C.A.5
  • 35
    • 15844400066 scopus 로고    scopus 로고
    • Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers
    • Peng JH, Lapitan NL (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomics 5: 80-96.
    • (2005) Funct Integr Genomics , vol.5 , pp. 80-96
    • Peng, J.H.1    Lapitan, N.L.2
  • 36
    • 33749349155 scopus 로고    scopus 로고
    • Robustness of activity of Calvin cycle enzymes after high light and low temperature conditions in Antarctic vascular plants
    • Pérez-Torres E, Bascuñán L, Sierra A, Bravo L, Corcuera L (2006) Robustness of activity of Calvin cycle enzymes after high light and low temperature conditions in Antarctic vascular plants. Polar Biol 29: 909-916.
    • (2006) Polar Biol , vol.29 , pp. 909-916
    • Pérez-Torres, E.1    Bascuñán, L.2    Sierra, A.3    Bravo, L.4    Corcuera, L.5
  • 38
    • 78650978688 scopus 로고    scopus 로고
    • Increasing photosynthetic carbon assimilation in C3 plants to improve crop yield: current and future strategies
    • Raines CA (2011) Increasing photosynthetic carbon assimilation in C3 plants to improve crop yield: current and future strategies. Plant Physiol 155: 36-42.
    • (2011) Plant Physiol , vol.155 , pp. 36-42
    • Raines, C.A.1
  • 39
    • 0344146583 scopus 로고    scopus 로고
    • Response of phosphoenolpyruvate carboxylase from maize leaves to moderate water deficit
    • Rodriguez-Penagos M, Munoz-Clares R (1999) Response of phosphoenolpyruvate carboxylase from maize leaves to moderate water deficit. J Plant Physiol 155: 631-638.
    • (1999) J Plant Physiol , vol.155 , pp. 631-638
    • Rodriguez-Penagos, M.1    Munoz-Clares, R.2
  • 40
    • 53649100100 scopus 로고    scopus 로고
    • The development and impact of 454 sequencing
    • Rothberg JM, Leamon JH (2008) The development and impact of 454 sequencing. Nat Biotechnol 26: 1117-1124.
    • (2008) Nat Biotechnol , vol.26 , pp. 1117-1124
    • Rothberg, J.M.1    Leamon, J.H.2
  • 41
    • 1942533656 scopus 로고    scopus 로고
    • Relationship between the heat tolerance of photosynthesis and the thermal stability of rubisco activase in plants from contrasting thermal environments
    • Salvucci ME, Crafts-Brandner SJ (2004) Relationship between the heat tolerance of photosynthesis and the thermal stability of rubisco activase in plants from contrasting thermal environments. Plant Physiol 134: 1460-1470.
    • (2004) Plant Physiol , vol.134 , pp. 1460-1470
    • Salvucci, M.E.1    Crafts-Brandner, S.J.2
  • 42
    • 33645243627 scopus 로고    scopus 로고
    • Arabidopsis phosphoenolpyruvate carboxylase genes encode immunologically unrelated polypeptides and are differentially expressed in response to drought and salt stress
    • Sánchez R, Flores A, Cejudo FJ (2006) Arabidopsis phosphoenolpyruvate carboxylase genes encode immunologically unrelated polypeptides and are differentially expressed in response to drought and salt stress. Planta 223: 901-909.
    • (2006) Planta , vol.223 , pp. 901-909
    • Sánchez, R.1    Flores, A.2    Cejudo, F.J.3
  • 44
    • 0141725442 scopus 로고    scopus 로고
    • Regulatory network of gene expression in the drought and cold stress responses
    • Shinozaki K, Yamaguchi-Shinozaki K, Seki M (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol 6: 410-417.
    • (2003) Curr Opin Plant Biol , vol.6 , pp. 410-417
    • Shinozaki, K.1    Yamaguchi-Shinozaki, K.2    Seki, M.3
  • 45
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey JD (2002) A direct approach to false discovery rates. J R Stat Soc B 64: 479-498.
    • (2002) J R Stat Soc B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 46
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106: 411-422.
    • (2003) Theor Appl Genet , vol.106 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 47
    • 70450260721 scopus 로고    scopus 로고
    • Alternative oxidase: a target and regulator of stress responses
    • van Aken O, Giraud E, Clifton R, Whelan J (2009) Alternative oxidase: a target and regulator of stress responses. Physiol Plant 137: 354-361.
    • (2009) Physiol Plant , vol.137 , pp. 354-361
    • van Aken, O.1    Giraud, E.2    Clifton, R.3    Whelan, J.4
  • 49
    • 79957694634 scopus 로고    scopus 로고
    • Proline metabolism and its implications for plant-environment interaction
    • Verslues PE, Sharma S (2010) Proline metabolism and its implications for plant-environment interaction. Arabidopsis Book 8: e0140.
    • (2010) Arabidopsis Book , vol.8
    • Verslues, P.E.1    Sharma, S.2
  • 50
    • 0030925049 scopus 로고    scopus 로고
    • Regulatory phosphorylation of C4 PEP carboxylase
    • Vidal J, Chollet R (1997) Regulatory phosphorylation of C4 PEP carboxylase. Trends Plant Sci 2: 230-237.
    • (1997) Trends Plant Sci , vol.2 , pp. 230-237
    • Vidal, J.1    Chollet, R.2
  • 51
    • 34248184632 scopus 로고    scopus 로고
    • Rapid divergence of codon usage patterns within the rice genome
    • Wang H-C, Hickey D (2007) Rapid divergence of codon usage patterns within the rice genome. BMC Evol Biol 7: S6.
    • (2007) BMC Evol Biol , vol.7
    • Wang, H.-C.1    Hickey, D.2
  • 52
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 53
    • 0028518754 scopus 로고
    • Characterization and differential expression of dhn/lea/rab-like genes during cold acclimation and drought stress in Arabidopsis thaliana
    • Welin BV, Olson A, Nylander M, Palva ET (1994) Characterization and differential expression of dhn/lea/rab-like genes during cold acclimation and drought stress in Arabidopsis thaliana. Plant Mol Biol 26: 131-144.
    • (1994) Plant Mol Biol , vol.26 , pp. 131-144
    • Welin, B.V.1    Olson, A.2    Nylander, M.3    Palva, E.T.4
  • 54
    • 67449141880 scopus 로고    scopus 로고
    • RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing
    • Wilhelm BT, Landry J-R (2009) RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing. Methods 48: 249-257.
    • (2009) Methods , vol.48 , pp. 249-257
    • Wilhelm, B.T.1    Landry, J.-R.2
  • 56
    • 0033766676 scopus 로고    scopus 로고
    • Photosynthetic and respiratory acclimation and growth response of Antarctic vascular plants to contrasting temperature regimes
    • Xiong FS, Mueller EC, Day TA (2000) Photosynthetic and respiratory acclimation and growth response of Antarctic vascular plants to contrasting temperature regimes. Am J Bot 87: 700-710.
    • (2000) Am J Bot , vol.87 , pp. 700-710
    • Xiong, F.S.1    Mueller, E.C.2    Day, T.A.3
  • 57
    • 0036273511 scopus 로고    scopus 로고
    • Cell signaling during cold, drought, and salt stress
    • Xiong L, Schumaker KS, Zhu J-K (2002) Cell signaling during cold, drought, and salt stress. Plant Cell 14: S165-S183.
    • (2002) Plant Cell , vol.14
    • Xiong, L.1    Schumaker, K.S.2    Zhu, J.-K.3
  • 58
    • 65349140727 scopus 로고    scopus 로고
    • Proteome changes induced by aluminium stress in tomato roots
    • Zhou S, Sauvé R, Thannhauser TW (2009) Proteome changes induced by aluminium stress in tomato roots. J Exp Bot 60: 1849-1857.
    • (2009) J Exp Bot , vol.60 , pp. 1849-1857
    • Zhou, S.1    Sauvé, R.2    Thannhauser, T.W.3
  • 59
    • 0036999615 scopus 로고    scopus 로고
    • Salt and drought stress signal transduction in plants
    • Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53: 247-273.
    • (2002) Annu Rev Plant Biol , vol.53 , pp. 247-273
    • Zhu, J.K.1
  • 60
    • 0030431321 scopus 로고    scopus 로고
    • Non-structural carbohydrates in Deschampsia antarctica Desv. from South Shetland Islands, maritime Antarctic
    • Zuñiga GE, Alberdi M, Corcuera LJ (1996) Non-structural carbohydrates in Deschampsia antarctica Desv. from South Shetland Islands, maritime Antarctic. Environ Exp Bot 36: 393-399.
    • (1996) Environ Exp Bot , vol.36 , pp. 393-399
    • Zuñiga, G.E.1    Alberdi, M.2    Corcuera, L.J.3


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