Towards automatic detection of experimental methods from biomedical literature

3rd International Symposium on Semantic Mining in Biomedicine, SMBM 2008 - Proceedings

Volumn , Issue , 2008, Pages 61-68

  Kappeler, Thomas ^a   Clematide, Simon ^a   Kaljurand, Kaarel ^a   Schneider, Gerold ^a   Rinaldi, Fabio ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC DETECTION; BIOMEDICAL LITERATURE; CURATION; DATA SET; EXPERIMENTAL METHODS; GOLD STANDARDS; PROTEIN INTERACTION; SCIENTIFIC PAPERS;

SEMANTICS;

EID: 84874227823     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (6)

1. H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, A Ceol, S Moore, S Orchard, U Sarkans, C von Mering, B Roechert, S Poux, E Jung, H Mersch, P Kersey, M Lappe, Y Li, R Zeng, D Rana, M Nikolski, H Husi, C Brun, K Shanker, C Grant SG, Sander, P Bork, W Zhu, A Pandey, A Brazma, B Jacq, M Vidal, D Sherman, P Legrain, G Cesareni, I Xenarios, D Eisenberg, B Steipe, C Hogue, and Apweiler R. 2004. The hupo psi's molecular interaction format - a community standard for the representation of protein interaction data. Nat. Biotechnol, 22:177-183.
2. S. Kerrien, Y. Alam-Faruque, B. Aranda, I. Bancarz, A. Bridge, C. Derow, E. Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, L. Montecchi-Palazzi, S. Orchard, J. Risse, K. Robbe, B. Roechert, D. Thorneycroft, Y. Zhang, R. Apweiler, and H. Hermjakob. 2006. IntAct - Open Source Resource for Molecular Interaction Data. Nucleic Acids Research.
3. Martin Krallinger, Florian Leitner, Carlos Rodriguez-Penagos, and Alfonso Valencia. 2008. Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biology. (to appear).
4. Florian Leitner, Martin Krallinger, Carlos Rodriguez-Penagos, Jörg Hakenberg, Conrad Plake, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hsi-Chuan Hung, William W. Lau, Calvin A. Johnson, Rune Saetre, Kazuhiro Yoshida, Yan Hua Chen, Sun Kim, Soo-Yong Shin, Byoung-Tak Zhang, William A. Baumgartner, Lawrence Hunter, Barry Haddow, Michael Matthews, Xinglong Wang, Patrick Ruch, Frédéric Ehrler, Arzucan Özgür, Günes Erkan, Dragomir R. Radev, Michael Krauthammer, ThaiBinh Luong, Robert Hoffmann, Chris Sander, and Alfonso Valencia. 2008. Introducing metaservices for biomedical information extraction. Genome Biology.
5. Fabio Rinaldi, Thomas Kappeler, Kaarel Kaljurand, Gerold Schneider, Manfred Klenner, Simon Clematide, Michael Hess, Jean-Marc von Allmen, Pierre Parisot, Martin Romacker, and Therese Vachon. 2008. OntoGene in BioCreative II. Genome Biology, 9, Suppl 2:S13.
6. A. Zanzoni, L. Montecchi-Palazzi, M. Quondam, G. Ausiello, M. Helmer-Citterich, and G. Cesareni. 2002. MINT: a Molecular INTeraction database. FEBS Letters, 513(1):135-140.