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Volumn 7, Issue 2, 2013, Pages 591-597

Identification of a novel gene fusion RNF213-SLC26A11 in chronic myeloid leukemia by RNA-Seq

Author keywords

BCR ABL; Chronic myeloid leukemia; Gene fusion; Reverse transcription polymerase chain reaction; RNA sequencing

Indexed keywords

ABELSON KINASE; BCR ABL PROTEIN; BREAKPOINT CLUSTER REGION PROTEIN; HYBRID PROTEIN; RING FINGER PROTEIN; RNF213 SLC26A11 FUSION PROTEIN; SULFATE; UNCLASSIFIED DRUG;

EID: 84873875257     PISSN: 17912997     EISSN: 17913004     Source Type: Journal    
DOI: 10.3892/mmr.2012.1183     Document Type: Article
Times cited : (18)

References (31)
  • 1
    • 33846551857 scopus 로고    scopus 로고
    • Chronic myeloid leukaemia in the 21st century
    • Frazer R, Irvine AE and McMullin MF: Chronic myeloid leukaemia in the 21st century. Ulster Med J 76: 8-17, 2007.
    • (2007) Ulster Med J , vol.76 , pp. 8-17
    • Frazer, R.1    Irvine, A.E.2    McMullin, M.F.3
  • 3
    • 0000286732 scopus 로고
    • A minute chromosome in human chronic granulocytic leukemia
    • Nowefl PC and Hungerford DA: A minute chromosome in human chronic granulocytic leukemia. Science 142: 1497, 1960.
    • (1960) Science , vol.142 , pp. 1497
    • Nowefl, P.C.1    Hungerford, D.A.2
  • 4
    • 0015694748 scopus 로고
    • Letter: A new consistent chromosomal abnormality in chronic myelogenous leukaemia identified by quinacrine fluorescence and Giemsa staining
    • Rowley JD: Letter: A new consistent chromosomal abnormality in chronic myelogenous leukaemia identified by quinacrine fluorescence and Giemsa staining. Nature 243: 290-293, 1973.
    • (1973) Nature , vol.243 , pp. 290-293
    • Rowley, J.D.1
  • 5
    • 0025614040 scopus 로고
    • The location of the Philadelphia chromosomal breakpoint site and prognosis in chronic granulocytic leukemia
    • Tefferi A, Bren GD, Wagner KV, Schaid DJ, Ash RC and Thibodeau SN: The location of the Philadelphia chromosomal breakpoint site and prognosis in chronic granulocytic leukemia. Leukemia 4: 839-842, 1990.
    • (1990) Leukemia , vol.4 , pp. 839-842
    • Tefferi, A.1    Bren, G.D.2    Wagner, K.V.3    Schaid, D.J.4    Ash, R.C.5    Thibodeau, S.N.6
  • 6
    • 0025348013 scopus 로고
    • Tyrosine kinase activity and transformation potency of BCR-ABL oncogene products
    • Lugo TG, Pendergast AM, Muller AJ and Witte ON: Tyrosine kinase activity and transformation potency of BCR-ABL oncogene products. Science 247: 1079-1082, 1990.
    • (1990) Science , vol.247 , pp. 1079-1082
    • Lugo, T.G.1    Pendergast, A.M.2    Muller, A.J.3    Witte, O.N.4
  • 7
    • 0021802841 scopus 로고
    • Fused transcript of abl and bcr genes in chronic myelogenous leukaemia
    • Shtivelman E, Lifshitz B, Gale RP and Canaani E: Fused transcript of abl and bcr genes in chronic myelogenous leukaemia. Nature 315: 550-554, 1985.
    • (1985) Nature , vol.315 , pp. 550-554
    • Shtivelman, E.1    Lifshitz, B.2    Gale, R.P.3    Canaani, E.4
  • 8
    • 33947581390 scopus 로고    scopus 로고
    • The impact of translocations and gene fusions on cancer causation
    • Mitelman F, Johansson B and Mertens F: The impact of translocations and gene fusions on cancer causation. Nat Rev Cancer 7: 233-245, 2007.
    • (2007) Nat Rev Cancer , vol.7 , pp. 233-245
    • Mitelman, F.1    Johansson, B.2    Mertens, F.3
  • 9
    • 80054915820 scopus 로고    scopus 로고
    • Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines
    • Ha KC, Lalonde E, Li L, et al: Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines. BMC Med Genomics 4: 75, 2011.
    • (2011) BMC Med Genomics , vol.4 , pp. 75
    • Ha, K.C.1    Lalonde, E.2    Li, L.3
  • 10
    • 62049085786 scopus 로고    scopus 로고
    • Transcriptome sequencing to detect gene fusions in cancer
    • Maher CA, Kumar-Sinha C, Cao X, et al: Transcriptome sequencing to detect gene fusions in cancer. Nature 458: 97-101, 2009.
    • (2009) Nature , vol.458 , pp. 97-101
    • Maher, C.A.1    Kumar-Sinha, C.2    Cao, X.3
  • 11
    • 67349146589 scopus 로고    scopus 로고
    • MRNA-Seq whole-transcriptome analysis of a single cell
    • Tang F, Barbacioru C, Wang Y, et al: mRNA-Seq whole-transcriptome analysis of a single cell. Nat Methods 6: 377-382, 2009.
    • (2009) Nat Methods , vol.6 , pp. 377-382
    • Tang, F.1    Barbacioru, C.2    Wang, Y.3
  • 13
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Wang Z, Gerstein M and Snyder M: RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63, 2009.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 14
    • 65449136284 scopus 로고    scopus 로고
    • Top Hat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L and Salzberg SL: Top Hat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 16
    • 64549119707 scopus 로고    scopus 로고
    • Statistical inferences for isoform expression in RNA-Seq
    • Jiang H and Wong WH: Statistical inferences for isoform expression in RNA-Seq. Bioinformatics 25: 1026-1032, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 1026-1032
    • Jiang, H.1    Wong, W.H.2
  • 18
    • 79957829805 scopus 로고    scopus 로고
    • DeFuse: An algorithm for gene fusion discovery in tumor RNA-Seq data
    • McPherson A, Hormozdiari F, Zayed A, et al: deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. PLoS Comput Biol 7: e1001138, 2011.
    • (2011) PLoS Comput Biol , vol.7
    • McPherson, A.1    Hormozdiari, F.2    Zayed, A.3
  • 19
    • 80051507403 scopus 로고    scopus 로고
    • Top Hat-Fusion: An algorithm for discovery of novel fusion transcripts
    • Kim D and Salzberg SL: Top Hat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biol 12: R72, 2011.
    • (2011) Genome Biol , vol.12
    • Kim, D.1    Salzberg, S.L.2
  • 20
    • 79952816655 scopus 로고    scopus 로고
    • MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers
    • Steidl C, Shah SP, Woolcock BW, et al: MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers. Nature 471: 377-381, 2011.
    • (2011) Nature , vol.471 , pp. 377-381
    • Steidl, C.1    Shah, S.P.2    Woolcock, B.W.3
  • 21
    • 78751650428 scopus 로고    scopus 로고
    • Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
    • Nacu S, Yuan W, Kan Z, et al: Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples. BMC Med Genomics 4: 11, 2011.
    • (2011) BMC Med Genomics , vol.4 , pp. 11
    • Nacu, S.1    Yuan, W.2    Kan, Z.3
  • 22
    • 0027519167 scopus 로고
    • The ABL-BCR fusion gene is expressed in chronic myeloid leukemia
    • Melo JV, Gordon DE, Cross NC and Goldman JM: The ABL-BCR fusion gene is expressed in chronic myeloid leukemia. Blood 81: 158-165, 1993.
    • (1993) Blood , vol.81 , pp. 158-165
    • Melo, J.V.1    Gordon, D.E.2    Cross, N.C.3    Goldman, J.M.4
  • 23
    • 61849163272 scopus 로고    scopus 로고
    • Molecular biology of BCR-ABL1-positive chronic myeloid leukemia
    • Quintas-Cardama A and Cortes J: Molecular biology of BCR-ABL1-positive chronic myeloid leukemia. Blood 113: 1619-1630, 2009.
    • (2009) Blood , vol.113 , pp. 1619-1630
    • Quintas-Cardama, A.1    Cortes, J.2
  • 24
    • 0034670036 scopus 로고    scopus 로고
    • The molecular biology of chronic myeloid leukemia
    • Deininger MW, Goldman JM and Melo JV: The molecular biology of chronic myeloid leukemia. Blood 96: 3343-3356, 2000.
    • (2000) Blood , vol.96 , pp. 3343-3356
    • Deininger, M.W.1    Goldman, J.M.2    Melo, J.V.3
  • 25
    • 70349575806 scopus 로고    scopus 로고
    • Chronic myeloid leukemia (CML) with P190 BCR-ABL: Analysis of characteristics, outcomes and prognostic significance
    • Verma D, Kantarjian HM, Jones D, et al: Chronic myeloid leukemia (CML) with P190 BCR-ABL: analysis of characteristics, outcomes and prognostic significance. Blood 114: 2232-2235, 2009.
    • (2009) Blood , vol.114 , pp. 2232-2235
    • Verma, D.1    Kantarjian, H.M.2    Jones, D.3
  • 26
    • 60649100664 scopus 로고    scopus 로고
    • A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis
    • Skotheim RI, Thomassen GO, Eken M, et al: A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Mol Cancer 8: 5, 2009.
    • (2009) Mol Cancer , vol.8 , pp. 5
    • Skotheim, R.I.1    Thomassen, G.O.2    Eken, M.3
  • 27
    • 46449095106 scopus 로고    scopus 로고
    • Mapping translocation breakpoints by next-generation sequencing
    • Chen W, Kalscheuer V, Tzschach A, et al: Mapping translocation breakpoints by next-generation sequencing. Genome Res 18: 1143-1149, 2008.
    • (2008) Genome Res , vol.18 , pp. 1143-1149
    • Chen, W.1    Kalscheuer, V.2    Tzschach, A.3
  • 28
    • 44349191457 scopus 로고    scopus 로고
    • Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
    • Campbell PJ, Stephens PJ, Pleasance ED, et al: Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. Nat Genet 40: 722-729, 2008.
    • (2008) Nat Genet , vol.40 , pp. 722-729
    • Campbell, P.J.1    Stephens, P.J.2    Pleasance, E.D.3
  • 29
    • 0024206188 scopus 로고
    • Absence of alternative splicing in BCR-ABL mRNA in chronic myeloid leukemia cell lines
    • Hermans A, Selleri L, Gow J and Grosveld GC: Absence of alternative splicing in BCR-ABL mRNA in chronic myeloid leukemia cell lines. Blood 72: 2066-2069, 1988.
    • (1988) Blood , vol.72 , pp. 2066-2069
    • Hermans, A.1    Selleri, L.2    Gow, J.3    Grosveld, G.C.4
  • 30
    • 0037646994 scopus 로고    scopus 로고
    • Molecular and functional characterization of SLC26A11, a sodium-independent sulfate transporter from high endothelial venules
    • Vincourt JB, Jullien D, Amalric F and Girard JP: Molecular and functional characterization of SLC26A11, a sodium-independent sulfate transporter from high endothelial venules. FASEB J 17: 890-892, 2003.
    • (2003) FASEB J , vol.17 , pp. 890-892
    • Vincourt, J.B.1    Jullien, D.2    Amalric, F.3    Girard, J.P.4
  • 31
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (Ref Seq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T and Maglott DR: NCBI Reference Sequence (Ref Seq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 33: D501-504, 2005.
    • (2005) Nucleic Acids Res , vol.33
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.