Niche differentiation and spatial partitioning in the evolution of two Australian monsoon tropical tree species

Journal of Biogeography

Volumn 40, Issue 3, 2013, Pages 559-569

  Edwards, Robert D ^a   Crisp, Michael D ^b   Cook, Lyn G ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

Author keywords

Australian monsoon tropics; Biogeography; Carpentaria Basin; CpDNA; Ecological niche modelling; Melaleuca; Niche divergence; Speciation; Sympatry

Indexed keywords

ALLOPATRY; BIOGEOGRAPHY; DICOTYLEDON; DISPERSAL; EVOLUTIONARY BIOLOGY; GENETIC VARIATION; NICHE PARTITIONING; SAVANNA; SPATIAL DISTRIBUTION; SPECIATION (BIOLOGY); SYMPATRY; TROPICAL FOREST;

AUSTRALIA;

CARPENTARIA; MELALEUCA; MELALEUCA ARGENTEA; MELALEUCA FLUVIATILIS;

EID: 84873724609     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/jbi.12027     Document Type: Article

References (54)

1. Abràmoff, M.D., Magalhães, P. & Ram, S. (2004) Image processing with ImageJ. Biophotonics International, 11, 36-43.
2. Álvarez, I. & Wendel, J.F. (2003) Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution, 29, 417-434.
3. Barlow, B.A. (1988) Patterns of differentiation in tropical species of Melaleuca L. (Myrtaceae). Proceedings of the Ecological Society of Australia, 15, 239-247.
4. Barlow, B.A. & Forrester, J. (1984) Variation in indumentum morphology in the Melaleuca leucadendra complex (Myrtaceae). Brunonia, 7, 277-288.
5. Binladen, J., Wiuf, C., Gilbert, M.T.P., Bunce, M., Barnett, R., Larson, G., Greenwood, A.D., Haile, J., Ho, S.Y.W., Hansen, A.J. & Willerslev, E. (2006) Assessing the fidelity of ancient DNA sequences amplified from nuclear genes. Genetics, 172, 733-741.
6. Bishop, P. (1995) Drainage rearrangement by river capture, beheading and diversion. Progress in Physical Geography, 19, 449-473.
7. Bowler, J. (1976) Aridity in Australia: age, origins and expression in aeolian landforms and sediments. Earth-Science Reviews, 12, 279-310.
8. Bowman, D.M.J.S., Brown, G.K., Braby, M.F., Brown, J.R., Cook, L.G., Crisp, M.D., Ford, F., Haberle, S., Hughes, J., Isagi, Y., Joseph, L., McBride, J., Nelson, G. & Ladiges, P.Y. (2010) Biogeography of the Australian monsoon tropics. Journal of Biogeography, 37, 201-216.
9. Brito, P.H. & Edwards, S.V. (2009) Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica, 135, 439-455.
10. Burbidge, N. (1960) The phytogeography of the Australian region. Australian Journal of Botany, 8, 75-211.
11. Clement, M., Posada, D. & Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
12. Cook, L.G., Morris, D.C., Edwards, R.D. & Crisp, M.D. (2008) Reticulate evolution in the natural range of the invasive wetland tree species Melaleuca quinquenervia. Molecular Phylogenetics and Evolution, 47, 506-522.
13. Coyne, J.A. & Orr, H.A. (2004) Speciation. Sinauer Associates, Sunderland, MA.
14. Craven, L. & Barlow, B. (1997) New taxa and new combinations in Melaleuca (Myrtaceae). Novon, 7, 113-119.
15. Crawford, N.G. (2010) smogd: software for the measurement of genetic diversity. Molecular Ecology Resources, 10, 556-557.
16. De Deckker, P. (1986) What happened to the Australian aquatic biota 18000 years ago? Limnology in Australia (ed. by P. De Deckker and W.D. Williams), pp. 487-496. CSIRO, Melbourne.
17. Doyle, J.J. & Doyle, J.L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11-15.
18. Excoffier, L., Smouse, P. & Quattro, J. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
19. Flot, J.-F. (2010) seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments. Molecular Ecology Resources, 10, 162-166.
20. Ford, J. (1982) Origin, evolution and speciation of birds specialized to mangroves in Australia. Emu, 82, 12-23.
21. Ford, J. (1987) Minor isolates and minor geographical barriers in avian speciation in continental Australia. Emu, 87, 90-102.
22. Forsyth, A. & Nott, J. (2003) Evolution of drainage patterns on Cape York Peninsula, northeast Queensland. Australian Journal of Earth Sciences, 50, 145-155.
23. Fried, A.W. & Smith, N. (1992) Timescales and the role of inheritance in long-term landscape evolution, northern New England, Australia. Earth Surface Processes and Landforms, 17, 375-385.
24. Glor, R.E. & Warren, D. (2011) Testing ecological explanations for biogeographic boundaries. Evolution, 65, 673-683.
25. Hartman, J.M. (1999) Factors influencing establishment success of Melaleuca quinquenervia (Cav.) S.T. Blake in Everglades National Park. Proceedings of the 1998 Joint Symposium of the Florida Exotic Pest Plant Council and the Florida Native Plant Society (ed. by D.T. Jones and B.W. Gamble), pp. 217-226. South Florida Water Management District, West Palm Beach, FL.
26. Haworth, R. & Ollier, C. (1992) Continental rifting and drainage reversal: the Clarence River of eastern Australia. Earth Surface Processes and Landforms, 17, 387-397.
27. Hopley, D. & Smithers, S. (2010) Queensland. Encyclopedia of the World's Coastal Landforms, 1, 1-12.
28. Hughes, J.M. & Hillyer, M.J. (2006) Mitochondrial DNA and allozymes reveal high dispersal abilities and historical movement across drainage boundaries in two species of freshwater fishes from inland rivers in Queensland, Australia. Journal of Fish Biology, 68, 270-291.
29. Hurwood, D. & Hughes, J. (1998) Phylogeography of the freshwater fish, Mogurnda adspersa, in streams of northeastern Queensland, Australia: evidence for altered drainage patterns. Molecular Ecology, 7, 1507-1517.
30. Kearns, A., Joseph, L. & Cook, L. (2010) The impact of Pleistocene changes of climate and landscape on Australian birds: a test using the Pied Butcherbird (Cracticus nigrogularis). Emu, 110, 285-295.
31. Keast, A. (1961) Bird speciation on the Australian continent. Bulletin of the Museum of Comparative Zoology (Harvard), 123, 307-495.
32. Kench, P. (1999) Geomorphology of Australian estuaries: review and prospect. Australian Journal Ecology, 24, 367-380.
33. Kershaw, A.P. (1978) Record of last interglacial-glacial cycle from northeastern Queensland. Nature, 272, 159-161.
34. Lee, J.Y. & Edwards, S.V. (2008) Divergence across Australia's Carpentarian Barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus). Evolution, 62, 3117-3134.
35. Maddison, W.P. & Maddison, D.R. (2010) Mesquite: a modular system for evolutionary analysis v2.73. Available at: http://mesquiteproject.org.
36. Martin, D.P., Lemey, P., Lott, M., Moulton, V., Posada, D. & Lefeuvre, P. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics, 26, 2462-2463.
37. McGlashan, D.J. & Hughes, J.M. (2001) Genetic evidence for historical continuity between populations of the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae) east and west of the Great Dividing Range. Journal of Fish Biology, 59, 55-67.
38. Miwa, M., Tanaka, R., Yamanoshita, T., Norisada, M., Kojima, K. & Hogetsu, T. (2001) Analysis of clonal structure of Melaleuca cajuputi (Myrtaceae) at a barren sandy site in Thailand using microsatellite polymorphisms. Trees, 15, 242-248.
39. Peakall, R. & Smouse, P.E. (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
40. Pepper, M., Doughty, P. & Keogh, J.S. (2006) Molecular phylogeny and phylogeography of the Australian Diplodactylus stenodactylus (Gekkota; Reptilia) species-group based on mitochondrial and nuclear genes reveals an ancient split between Pilbara and non-Pilbara D. stenodactylus. Molecular Phylogenetics and Evolution, 41, 539-555.
41. Phillips, S., Anderson, R. & Schapire, R. (2006) Maximum entropy modeling of species geographic distributions. Ecological Modeling, 190, 231-259.
42. Posada, D. & Crandall, K. (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proceedings of National Academy of Sciences USA, 98, 13757-13762.
43. Rambaut, A. (1996) Se-Al: Sequence Alignment Editor. University of Oxford, Department of Zoology. Available at: http://tree.bio.ed.ac.uk/software/seal/ (accessed 2 February 2010).
44. Reeves, J., Chivas, A., Garcia, A., Holt, S., Couapel, M.J.J., Jones, B.G., Cendon, D.I. & Fink, D. (2008) The sedimentary record of palaeoenvironments and sea-level change in the Gulf of Carpentaria, Australia, through the last glacial cycle. Quaternary International, 183, 3-22.
45. Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
46. Schodde, R. (2006) Australia's bird fauna today - origins and development. Evolution and Biogeography of Australasian Vertebrates, 1, 413-458.
47. Stephens, M. & Donnelly, P. (2003) A comparison of Bayesian methods for haplotype reconstruction from population genotype data. The American Journal of Human Genetics, 73, 1162-1169.
48. Swayne, D.F., Buja, A., Lang, D.T. & Cook, D. (2010) GGobi: a data visualization system. Available at: http://www.ggobi.org (accessed 25 November 2011).
49. Swofford, D.L. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods). Sinauer, Sunderland, MA.
50. Toon, A., Mather, P., Baker, A., Durrant, K. & Hughes, J. (2007) Pleistocene refugia in an arid landscape: analysis of a widely distributed Australian passerine. Molecular Ecology, 16, 2525-2541.
51. Toon, A., Hughes, J.M. & Joseph, L. (2010) Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone. Molecular Ecology, 19, 2980-2994.
52. Warren, D.L., Glor, R.E. & Turelli, M. (2010) ENMTools: a toolbox for comparative studies of environmental niche models. Ecography, 33, 607-611.
53. Wickneswari, R. & Norwati, M. (1993) Genetic diversity of natural populations of Acacia auriculiformis. Australian Journal of Botany, 41, 65-77.
54. Woodall, S.L. (1982) Seed dispersal in Melaleuca quinquenervia. Florida Scientist, 45, 81-93.