Complete genome sequencing of two causative viruses of cassava mosaic disease in Ghana

Acta Virologica

Volumn 56, Issue 4, 2012, Pages 305-314

  Oteng Frimpong, R ^a,b   Levy, Y ^c   Torkpo, S K ^a   Danquah, E Y ^a   Offei, S K ^a   Gafni, Y ^c  

^a UNIVERSITY OF GHANA   (Ghana)

^b Savanna Agricultural Research Institute   (Ghana)

^c VOLCANI CENTER   (Israel)

Author keywords

Begomovirus; Cassava mosaic disease; Rolling circle amplification

Indexed keywords

CAPSID PROTEIN; DNA A; DNA B;

AMINO ACID SEQUENCE; ARTICLE; BACTERIUM COLONY; CASSAVA MOSAIC DISEASE; DNA EXTRACTION; GEMINIVIRUS; GENE SEQUENCE; GHANA; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROMOTER REGION; VIRUS GENOME;

BASE SEQUENCE; BEGOMOVIRUS; GENOME, VIRAL; GHANA; MANIHOT; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; SEQUENCE ANALYSIS, DNA;

EID: 84873724186     PISSN: 0001723X     EISSN: None     Source Type: Journal    
DOI: 10.4149/av_2012_04_305     Document Type: Article

References (28)

1. Adepoju OT, Adekola YG, Mustapha SO, Ogunola SI (2010): Effect of processing methods on nutrient retention and contribution of cassava (Manihot Spp) to nutrient intake of nigerian consumers. Afr. J. Food Agric. Nutr. Dev. 10, 2099-2111.
2. Adjata KD, Muller E, Peterschmitt M, Traore O, Gumedzoe YMD (2009): Moleculat evidence for the association of a strain of Uganda variant of East African cassava mosaic virus to symptom severity in cassava (Manihot esculenta Crantz) fields in Togo. Amer. J. Biochem. Biotech. 5, 196-201. http://dx.doi.org/10.3844/ajbbsp.2009.196.201
3. Alabi OJ, Ogbe FO, Bandyopadhyay R, Lava Kumar P, Dixon AG, Hughes J, Naidu RA (2008): Alternate hosts of African cassava mosaic virus and East African cassava mosaic Cameroon virus in Nigeria. Arch.Virol. 153, 1743-1747. http://dx.doi.org/10.1007/s00705-008-0169-8
4. Chatterji A, Padidam M, Beachy RN, Fauquet CM (1999): Identification of replication specificity determinants in two strains of tomato leaf curl virus from New Delhi. J. Virol. 73, 5481-5489.
5. Eagle PA, Orozco BM, Hanley-Bowdoin L (1994): A DNA sequence required for geminivirus replication also mediates transcriptional regulation. Plant Cell 6, 1157-1170.
6. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. http://dx.doi.org/10.1093/nar/gkh340
7. Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008): Geminivirus strain demarcation and nomenclature. Arch. Virol. 153, 783-821. http://dx.doi.org/10.1007/s00705-008-0037-6
8. Fondong VN, Pita JS, Rey ME, de Kochko A, Beachy RN. Fauquet CM (2000): Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon. J. Gen. Virol. 81, 287-297.
9. Fontes EP, Eagle PA, Sipe PS, Luckow VA, Hanley-Bowdoin L (1994) Interaction between a geminivirus replication protein and origin DNA is essential for viral replication. J. Biol. Chem. 269, 8459-8465.
10. Guenoune-Gelbart D, Sufrin-Ringwald T, Capobianco H, Gaba V, Polston JE, Lapidot M (2010): Inoculation of plants with begomoviruses by particle bombardment without cloning: Using rolling circle amplification of total DNA from infected plants and whiteflies. J. Virol. Methods 168, 87-93. http://dx.doi.org/10.1016/j.jviromet.2010.04.022
11. Guindon S, Gascuel O (2003): A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704. http://dx.doi.org/10.1080/10635150390235520
12. Haible D, Kober S, Jeske H (2006): Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. J. Virol. Methods 135, 9-16. http://dx.doi.org/10.1016/j.jviromet.2006.01.017
13. Lamptey JNL, Okoli OO, Frimpong-Manso PP (1998): Incidence and severity of African cassava mosaic disease (ACMD) and cassava bacterial blight (CBB) on some local and exotic cassava varieties in different ecological zones in Ghana. Ghan. J. Agric. Sci. 31, 35-43.
14. Lamptey JNL, Okoli OO, Rossel HW, Frimpong-Manso PP (2000): A method for determining tolerance of cassava genotypes to African cassava mosaic disease in the screenhouse. Ghan. J. Agric. Sci. 33, 29-32.
15. Legg JP, Fauquet CM (2004): Cassava mosaic geminiviruses in Africa. Plant Mol. Biol. 56, 585-599. http://dx.doi.org/10.1007/s11103-004-1651-7
16. Manu-Aduening JA, Lamboll RI, Mensah GA, Gibson RW (2007): Farmers' perceptions and knowledge of cassava pests and diseases and their approach to germplasm selection for resistance in Ghana. Ann. Appl. Biol. 151, 189-198. http://dx.doi.org/10.1111/j.1744-7348.2007.00156.x
17. Nassar NMA, Ortiz R (2006): Cassava improvement: challenges and impacts. J. Agric. Sci. 145, 163-171. http://dx.doi.org/10.1017/S0021859606006575
18. Ndunguru J, Legg JP, Aveling TA, Thompson G, Fauquet CM (2005) Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses. Virol. J. 2, 21. http://dx.doi.org/10.1186/1743-422X-2-21
19. Offei SK, Owuna-Kwakye M, Thottappilly G (1999): First Report of East African Cassava Mosaic Begomovirus in Ghana. Plant Dis. 83, 877-877. http://dx.doi.org/10.1094/PDIS.1999.83.9.877C
20. Patil BL, Fauquet CM (2009): Cassava mosaic geminiviruses: actual knowledge and perspectives. Mol. Plant Pathol. 10, 685-701. http://dx.doi.org/10.1111/j.1364-3703.2009.00559.x
21. Pita JS, Fondong VN, Sangaré A, Otim-Nape GW, Ogwal S, Fauquet CM (2001): Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda. J. Gen. Virol. 82, 655-665.
22. Roberts S, Stanley J (1994): Lethal Mutations Within the Conserved Stem-loop of African Cassava Mosaic Virus DNA are Rapidly Corrected by Genomic Recombination. J. Gen. Virol. 75, 3203-3209. http://dx.doi.org/10.1099/0022-1317-75-11-3203
23. Sambrook J, Fritsch EF, Maniatis T (1989): Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
24. Sayre R, Beeching JR, Cahoon EB, Egesi C, Fauquet C, Fellman J, Fregene M, Gruissem W, Mallowa S, Manary M, Maziya- Dixon B, Mbanaso A, Schachtman DP, Siritunga D, Taylor N, Vanderschuren H, Zhang P (2011): The BioCassava plus program: biofortification of cassava for sub-Saharan Africa. Annu. Rev. Plant Biol. 62, 251-272. http://dx.doi.org/10.1146/annurev-arplant-042110-103751
25. Stanley J, Gay MR (1983): Nucleotide sequence of cassava latent virus DNA. Nature 301, 260-262. http://dx.doi.org/10.1038/301260a0
26. Tiendrébéogo F, Lefeuvre P, Hoareau M, Traoré VSE, Barro N, Reynaud B, Traoré AS, Konaté G, Traoré O, Lett JM (2009): Occurrence of East African cassava mosaic virus-Uganda (EACMV-UG) in Burkina Faso. Plant Pathol. 58, 783-783. http://dx.doi.org/10.1111/j.1365-3059.2009.02110.x
27. Torkpo SK (2009): Analysis of cassava mosaic begomovirusesassociated with cassava mosaic diseases in Ghana. University of Ghana.
28. Vanitharani R, Chellappan P, Pita JS, Fauquet CM (2004): Differential roles of AC2 and AC4 of cassava geminiviruses in mediating synergism and suppression of posttranscriptional gene silencing. J. Virol. 78, 9487-9498. http://dx.doi.org/10.1128/JVI.78.17.9487-9498.200