Modeling Species Distributions from Heterogeneous Data for the Biogeographic Regionalization of the European Bryophyte Flora

PLoS ONE

Volumn 8, Issue 2, 2013, Pages

  Mateo, Rubén G ^a   Vanderpoorten, Alain ^a,c   Muñoz, Jesús ^b,d   Laenen, Benjamin ^a   Désamoré, Aurélie ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b CSIC   (Spain)

^c UNIVERSITY OF THE AZORES   (Portugal)

^d UNIVERSIDAD TECNOLÓGICA INDOAMÉRICA   (Ecuador)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOGEOGRAPHIC REGION; CONTROLLED STUDY; DATA ANALYSIS; ECOPHYSIOLOGY; EUROPE; FLORA; GEOGRAPHIC DISTRIBUTION; MOSS; NONHUMAN; POPULATION DISPERSION; PREDICTION; SPECIES COMPOSITION; SPECIES DISTRIBUTION;

BRYOPHYTA; CLUSTER ANALYSIS; GEOGRAPHY; MODELS, THEORETICAL;

EID: 84873720007     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055648     Document Type: Article

References (80)

1. Kreft H, Jetz W, (2010) A framework for delineating biogeographical regions based on species distributions. J Biogeogr 37: 2029-2053.
2. Mackey BG, Berry SL, Brown T, (2008) Reconciling approaches to biogeographical regionalisation: a systematic and generic framework examined with a case study of the Australian continent J Biogeogr. 35: 213-229.
3. Cox CB, (2001) The biogeographic regions reconsidered. J Biogeogr 28: 511-523.
4. Cox CB, (2010) Underpinning global biogeographical schemes with quantitative data. J Biogeogr 37: 2027-2028.
5. Rueda M, Rodríguez MÁ, Hawkins BA, (2010) Towards a biogeographic regionalization of the European biota. J Biogeogr 37: 2067-2076.
6. Heikinheimo H, Eronen JT, Sennikov A, Preston CD, Oikarinen E, et al. (2012) Convergence in the distribution patterns of Europe's plants and mammals is due to environmental forcing. J Biogeogr 39: 1633-1644.
7. Vanderpoorten A, Goffinet B (2009) Introduction to Bryophytes. London: Cambridge University Press. 312 pp.
8. Shaw AJ, Cox CJ, Goffinet B, (2005) Global patterns of moss diversity: taxonomic and molecular inference. Taxon 54: 337-352.
9. Rozzi R, Armesto JJ, Goffinet B, Buck W, Massardo F, et al. (2008) Changing lenses to assess biodiversity: patterns of species richness in sub-Antarctic plants and implications for global conservation. Front Ecol Environ 6: 131-137.
10. Vanderpoorten A, Gradstein SR, Carine MA, Devos N, (2010) The ghosts of Gondwana and Laurasia in modern liverwort distributions. Biol Rev 85: 471-487.
11. Rosenzweig ML (2005) Species diversity in space and time. New York: Cambridge University Press. 423 pp.
12. van Rooy J, Abraham E, van Wyk JAE, (2011) The bryofloristic elements of southern Africa. J Bryol 33: 17-29.
13. Preston DD, Hill MO, (1999) The geographical relationships of the British and Irish flora: a comparison of pteridophytes, flowering plants, liverworts and mosses. J Biogeogr 26: 629-642.
14. Araújo MB, Guisan A, (2006) Five (or so) challenges for species distribution modelling. J Biogeogr 33: 1677-1688.
15. Mateo RG, Felicísimo AM, Muñoz J, (2011) Species distributions models: A synthetic revision. Revista Chilena de Historia Natural 84: 217-240.
16. Linder HP, de Klerk HM, Born J, Burgess ND, Fjeldså J, et al. (2012) The partitioning of Africa: statistically defined biogeographical regions in sub-Saharan Africa. J Biogeogr 39: 1189-1205.
17. Guisan A, Zimmermann NE, (2000) Predictive habitat distribution models in ecology. Ecol Modell 135: 147-186.
18. Veloz SD, (2009) Spatially autocorrelated sampling falsely inflates measures of accuracy for presence-only niche models. J Biogeogr 36: 2290-2299.
19. Phillips SJ, DudÃk M, Elith J, Graham CH, Lehmann A, et al. (2009) Sample selection bias and presence-only distribution models: implications for background and pseudo-absence data. Ecol Appl 19: 181-197.
20. Hijmans RJ, Elith J (2012) Species distribution modeling with R. Available: http://cran.r-project.org/web/packages/dismo/vignettes/dm.pdf.Accessed 2012 Mar 12.
21. Proches S, (2001) Back to the sea: secondary marine organisms from a biogeographical perspective. Biol J Linn Soc 74: 197-203.
22. Grolle R, Long DG, (2000) An annotated checklist of the Hepaticae and Anthocertoae of Europe and Macaronesia. J Bryol 22: 103-140.
23. Hill MO, Bell N, Bruggeman-Nannenga MA, Bruguès M, Cano MJ, et al. (2006) An annotated checklist of the mosses of Europe and Macaronesia. J Bryol 28: 198-267.
24. Winter M, Schweiger O, Klotz S, Nentwig W, Andriopoulos P, et al. (2009) Plant extinctions and introductions lead to phylogenetic and taxonomic homogenization of the European flora. PNAS 106: 21721-21725.
25. Söderström L (1992) Invasions and range expansions and contractions of bryophytes. In: Bates JW, Farmer AM, editors. Bryophytes and lichens in a changing environment Oxford: Clarendon Press. 131-158.
26. Shaw AJ, (1985) The relevance of ecology to species concepts in bryophytes. Bryologist 88: 199-206.
27. Vanderpoorten A, Durwael L, (1999) Trophic response curves of aquatic bryophytes in lowland calcareous streams. Bryologist 102: 720-728.
28. Vanderpoorten A, Shaw AJ, (2010) The application of molecular data to the phylogenetic delimitation of species in bryophytes: a note of caution. Phytotaxa 9: 229-237.
29. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A, (2005) Very high resolution interpolated climate surfaces for global land areas. Int J Climatol 25: 1965-1978.
30. Phillips SJ, Anderson RP, Schapire RP, (2006) Maximum entropy modeling of species geographic distributions. Ecol Modell 190: 231-259.
31. Elith J, Phillips SJ, Hastie T, Dudík M, Chee YE, et al. (2011) A statistical explanation of MaxEnt for ecologists. Divers Distrib 17: 43-57.
32. Elith J, Graham CH, Anderson RP, Dudík M, Ferrier S, et al. (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography 29: 129-151.
33. Hernandez PA, Graham CH, Master LL, Albert DL, (2006) The effect of sample size and species characteristics on performance of different species distribution modeling methods. Ecography 29: 773-785.
34. Papeş M, Gaubert P, (2007) Modelling ecological niches from low numbers of occurrences: assessment of the conservation status of poorly known viverrids (Mammalia, Carnivora) across two continents. Divers Distrib 13: 890-902.
35. Mateo RG, Felicísimo ÁM, Pottier J, Guisan A, Muñoz J, (2012) Do stacked species distribution models reflect altitudinal diversity patterns? PLoS ONE 7: e32586.
36. Fielding AH, Bell JF, (1997) A review of methods for the assessment of prediction errors in conservation presence/absence models. Environmental Conservation 24: 38-49.
37. Pearce J, Ferrier S, (2000) Evaluating the predictive performance of habitat models developed using logistic regression. Ecol Modell 133: 225-245.
38. Elith J, Leathwick JR, (2007) Predicting species distributions from museum and herbarium records using multiresponse models fitted with multivariate adaptive regression splines. Divers Distrib 13: 265-275.
39. Carine MA, Humphries CJ, Rosana Guma I, Alfredo Reyes-Betancort J, Santos Guerra A, (2009) Areas and algorithms: evaluating numerical approaches for the delimitation of areas of endemism in the Canary Islands archipelago. J Biogeogr 36: 593-611.
40. Preston CD, Harrower CA, Hill MO, (2011) Distribution patterns in British and Irish liverworts and hornworts. J Bryol 33: 3-16.
41. Bohn U, Neuhäusl R, Hettwer C, Gollub G, Weber H (2000-2004) Karte der natürlichen Vegetation Europas - Map of the Natural Vegetation of Europe. Bonn: Bundesamt für Naturschutz.
42. Monserud RA, Leemans R, (1992) Comparing global vegetation maps with the Kappa statistic. Ecol Modell 62: 275-293.
43. Metzger MJ, Bunce RGH, Jongman RHG, Mücher CA, Watkins JW, (2005) A climatic stratification of the environment of Europe. Global Ecol Biogeogr 14: 549-556.
44. Dufrêne M, Legendre P (1997) Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr 67 345-366.
45. Düll R, (1983) Distribution of the European and Macaronesian liverworts (Hepaticophytina). Bryologische Beiträge 2: 1-115.
46. Düll R, (1984) Distribution of the European mosses (Bryophytina) part. I. Bryologische Beiträge 4: 1-113.
47. Düll R, (1985) Distribution of the European and Macaronesian mosses (Bryophytina) part. II. Bryologische Beiträge 5: 1-232.
48. Engler R, Hordijk W, Guisan A, (2012) The MIGCLIM R package - seamless integration of dispersal constraints into projections of species distribution models. Ecography 35: 872-878.
49. Svenning J-C, Skov F, (2004) Limited filling of the potential range in European tree species. Ecol Lett 7: 565-573.
50. Normand S, Ricklefs RE, Skov F, Bladt J, Tackenberg O, et al. (2011) Postglacial migration supplements climate in determining plant species ranges in Europe. Proc R Soc Lond B Biol Sci 278: 3644-3653.
51. Aranda SC, Lobo JM, (2011) How well does presence-only-based species distribution modelling predict assemblage diversity? A case study of the Tenerife flora. Ecography 34: 31-38.
52. Woodward FI (1987) Climate and Plant Distribution. Cambridge: University Press. 188 pp.
53. Rydin H (2009) Population and community ecology of bryophytes. In: Goffinet B, Shaw AJ, editors. Bryophyte Biology. Cambridge: Cambridge University Press. 393-444.
54. Gignac LD, Halsey LA, Vitt DH, (2000) A bioclimatic model for the distribution of Sphagnum-dominated peatlands in North America under present climatic conditions. J Biogeogr 27: 1139-1151.
55. Van der Velde M, Bijlsma R, (2003) Phylogeography of five Polytrichum species within Europe. Biol J Linn Soc 78: 203-213.
56. Szövényi P, Hock Z, Urmi E, Schneller JJ, (2006) Contrasting phylogeographic patterns in Sphagnum fimbriatum and Sphagnum squarrosum (Bryophyta, Sphagnopsida) in Europe. New Phytol 172: 784-794.
57. Laenen B, Désamoré A, Devos N, Shaw AJ, González-Mancebo J-M, et al. (2011) Macaronesia: a source of hidden genetic diversity for post-glacial recolonization of western Europe in the leafy liverwort Radula lindenbergiana. J Biogeogr 38: 631-639.
58. Zechmeister H, Moser D, Milasowszky N, (2007) Spatial distribution patterns of Rhynchostegium megapolitanum at the landscape scale - an expanding species? Appl Ver Sci 10: 111-120.
59. Hutsemékers V, Dopagne C, Vanderpoorten A, (2008) How far and how fast do bryophytes travel at the landscape scale? Divers Distrib 14: 483-492.
60. Jonsgard B, Birks HH, (1995) Late-glacial mosses and environmental reconstructions at Kråkenes, western Norway. Lindbergia 20: 64-82.
61. Ellis CJ, Tallis JH, (2000) Climatic control of blanket mire development at Kentra Moss, north-west Scotland. J Ecol 88: 869-889.
62. Vanderpoorten A, Engels P, (2002) The effects of environmental variation on bryophytes at a regional scale. Ecography 25: 513-522.
63. Syphard AD, Franklin J, (2010) Species traits affect the performance of species distribution models for plants in southern California. J Veg Sci 21: 177-189.
64. Wohlgemuth T, (1996) Biogeographical regionalization of Switzerland based on floristic data: how many species are needed? Biodivers Lett 3: 180-191.
65. Ozenda P, (2009) On the genesis of the plant population in the Alps: new or critical aspects. Comptes Rendus Biologies 332: 1092-1103.
66. Takhtajan A (1986) Floristic regions of the world. Berkeley, CA: University of California Press.
67. Preston CD, Hill MO, (1997) The geographical relation- ships of British and Irish vascular plants. Bot J Linn Soc 124: 1-120.
68. Désamoré A, Laenen B, Stech M, Papp B, Hedenäs L, et al. (2012) How do temperate bryophytes face the challenge of a changing environment? Lessons from the past and predictions for the future. Glob Change Biol 18: 2915-2924.
69. Désamoré A, Laenen B, Devos N, Popp M, González-Mancebo J-M, et al. (2011) Out of Africa: north-westwards Pleistocene expansions of the heather Erica arborea. J Biogeogr 38: 164-176.
70. Migliore J, Baumel A, Juin M, Médail F, (2011) From Mediterranean shores to central Saharan mountains: key phylogeographical insights from the genus Myrtus. J Biogeogr 39: 942-956.
71. Thompson JD (2005) Plant Evolution in the Mediterranean. Oxford: Oxford University Press. 293 pp.
72. Latimer AM, Silander JAJ, Cowling RM, (2005) Neutral ecological theory reveals isolation and rapid speciation in a biodiversity hots-spot. Science 309: 1722-1725.
73. Petit R, Hampe A, Cheddadi R, (2005) Climate changes and tree phylogeography in the Mediterranean. Taxon 54: 877-885.
74. Sotiaux A, Enroth J, Quandt D, Olsson S, Vanderpoorten A, (2009) When morphology and molecules tell us different stories: a case-in-point with Leptodon corsicus, a new and unique endemic moss species from Corsica. J Bryol 31: 186-196.
75. Finnie TJR, Preston CD, Hill MO, Uotila P, Crawley MJ, (2007) Floristic elements in European vascular plants: an analysis based on Atlas Florae Europaeae. J Biogeogr 34: 1848-1872.
76. Vanderpoorten A, Laenen B, Gabriel R, Gonzalez-Mancebo J-M, Rumsey F, et al. (2011) Dispersal, diversity and evolution of the Macaronesian cryptogamic floras. In: Bramwell D, Caujapé-Castells J, editors. The Biology of Island Floras. Cambridge: Cambridge University Press. 338-364.
77. Hutsemékers V, Szoveńyi P, Shaw AJ, Gonzaĺez-Mancebo JM, Munõz J, et al. (2011) Oceanic islands are not sinks of biodiversity in spore-producing plants. PNAS 108: 18989-18994.
78. Vanderpoorten A, Rumsey FJ, Carine MA, (2007) Does Macaronesia exist? Conflicting signal in the bryophyte and pteridophyte floras. Am J Bot 94: 625-639.
79. Lengyel S, Déri E, Varga Z, Horváth R, Tóthmérész B, et al. (2008) Habitat monitoring in Europe: a description of current practices. Biodivers Conserv 17: 3327-3339.
80. Schmeller DS, Henry P-Y, Julliard R, Clobert J, Lengyels S, et al. (2009) Advantages of volunteer-based biodiversity monitoring in Europe. Conserv Biol 23: 307-316.