Development and use of new sensitive molecular tools for diagnosis and detection of Melampsora rusts on cultivated poplar

Forest Pathology

Volumn 43, Issue 1, 2013, Pages 1-11

  Husson, C ^a   Ioos, R ^b   Andrieux, A ^a   Frey, P ^a  

^a UNIVERSITÉ DE LORRAINE   (France)

^b FRENCH AGENCY FOR FOOD   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CULTIVATION; DECIDUOUS TREE; DETECTION METHOD; DEVELOPMENTAL BIOLOGY; DISEASE PREVALENCE; DNA; FUNGAL DISEASE; HOST-PATHOGEN INTERACTION; INHIBITOR; MOLECULAR ANALYSIS; MORPHOLOGY; PLANT EXTRACT; POLYMERASE CHAIN REACTION;

EUROPE;

AIGEIROS; BACTERIA (MICROORGANISMS); LARIX; MELAMPSORA; MELAMPSORA ALLII-POPULINA; MELAMPSORA LARICIS-POPULINA; MELAMPSORA MEDUSAE; MELAMPSORA PINITORQUA; POPULUS; TACAMAHACA; UREDINALES;

EID: 84873526655     PISSN: 14374781     EISSN: 14390329     Source Type: Journal    
DOI: 10.1111/efp.12007     Document Type: Article

References (41)

1. AFOCEL (eds.) 2009: Memento FCBA 2008-2009. Paris: AFOCEL, pp. 33.
2. Aguileta, G.; Marthey, S.; Chiapello, H.; Lebrun, M. H.; Rodolphe, F.; Fournier, E.; Gendrault-Jacquemard, A.; Giraud, T., 2008: Assessing the performance of single-copy genes for recovering robust phylogenies. Syst. Biol. 57, 613-627.
3. Bourassa, M.; Bernier, L.; Hamelin, R. C., 2005: Direct genotyping of the poplar leaf rust fungus, Melampsora medusae f. sp. deltoidae, using codominant PCR-SSCP markers. For. Pathol. 35, 245-261.
4. Bourassa, M.; Bernier, L.; Hamelin, R. C., 2007: Genetic diversity in poplar leaf rust (Melampsora medusae f. sp deltoidae) in the zones of host sympatry and allopatry. Phytopathology 97, 603-610.
5. Boyle, B.; Hamelin, R. C.; Seguin, A., 2005: In vivo monitoring of obligate biotrophic pathogen growth by kinetic PCR. Appl. Environ. Microbiol. 71, 1546-1552.
6. Charcosset, J. Y.; Gardes, M., 1999: Infraspecific genetic diversity and substrate preference in the aquatic hyphomycete Tetrachaetum elegans. Mycol. Res. 103, 736-742.
7. Chung, W. H.; Chung, W. C.; Ting, P. F.; Huang, H. C.; Huang, J. W., 2008: Molecular identification of Uromyces appendiculatus and Uromyces vignae from Taiwan with PCR-based method. Plant. Pathol. 17, 297-305.
8. Corpet, F., 1988: Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16, 10881-10890.
9. Desprez-Loustau, M. L.; Robin, C.; Reynaud, G.; Déqué, M.; Badeau, V.; Piou, D.; Husson, C.; Marçais, B., 2007: Simulating the effects of a climate-change scenario on the geographical range and activity of forest-pathogenic fungi. Can. J. Plant Pathol. 29, 101-120.
10. Eckenwalder, J. E., 1996: Systematics and evolution of Populus. In: Biology of Populus and its implications for management and conservation. Ed. by Stettler, R. F.; Bradshaw Jr, H. D.; Heilman, P. E.; Hinckley, T. M. Ottawa: NRC Research Press, pp. 7-32.
11. Feau, N.; Vialle, A.; Allaire, M.; Tanguay, P.; Joly, D. L.; Frey, P.; Calland, B. E.; Hamelin, R. C., 2009: Fungal pathogen (mis-) identifications: a case study with DNA barcodes on Melampsora rusts of aspen and white poplar. Mycol. Res. 113, 713-724.
12. Frey, P.; Gérard, P.; Feau, N.; Husson, C.; Pinon, J., 2005: Variability and population biology of Melampsora rusts on poplars. In: Rust diseases of Willow and Poplar. Ed. by Pei, M. H.; McCracken, A. R. Wallingford: CAB International, pp. 63-72.
13. Gastine, F.; Berthelot, A.; Bouvet, A., 2003: La protection phytosanitaire du cultivar 'Beaupré' est-elle efficace ? Fiche Informations - Forêt AFOCEL 667, pp. 4
14. Gérard, P.; Husson, C.; Pinon, J.; Frey, P., 2006: Comparison of genetic and virulence diversity of Melampsora larici-populina populations on wild and cultivated poplar and influence of the alternate host. Phytopathology 96, 1027-1036.
15. Hacquard, S.; Veneault-Fourrey, C.; Delaruelle, C.; Frey, P.; Martin, F.; Duplessis, S., 2011: Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves. Physiol. Mol. Plant P. 75, 106-112.
16. Henrion, B.; Chevalier, G.; Martin, F., 1994: Typing truffle species by PCR amplification of the ribosomal DNA spacers. Mycol. Res. 98, 37-43.
17. Ioos, R.; Laugustin, L.; Schenck, N.; Rose, S.; Husson, C.; Frey, P., 2006: Usefulness of single copy genes containing introns in Phytophthora for the development of detection tools for the regulated species P. ramorum and P. fragariae. Eur. J. Plant Pathol. 116, 171-176.
18. Langrell, S. R. H., 2002: Molecular detection of Neonectria galligena (Syn. Nectria galligena). Mycol. Res. 106, 280-292.
19. Miot, S.; Frey, P.; Pinon, J., 1999: Varietal mixture of poplar clones: effects on infection by Melampsora larici-populina and on plant growth. Eur. J. For. Pathol. 29, 411-423.
20. Newcombe, G.; Chastagner, G. A.; Schuette, W.; Stanton, B. J., 1994: Mortality among hybrid poplar clones in a stool bed following leaf rust caused by Melampsora medusae f. sp. deltoidae. Can. J. For. Res. 24, 1984-1987.
21. OEPP/EPPO 1982: Data sheets on quarantine organisms no. 33, Melampsora medusae. Bull. OEPP/EPPO 12, pp. 6.
22. Paris, P.; Mareschi, L.; Sabatti, M.; Pisanelli, A.; Ecosse, A.; Nardin, F.; Scarascia-Mugnozza, G., 2011: Comparing hybrid Populus clones for SRF across northern Italy after two biennial rotations: survival, growth and yield. Biomass Bionergy 35, 1524-1532.
23. Pedley, K. F., 2009: PCR-Based assays for the detection of Puccinia horiana on Chrysanthemums. Plant Dis. 93, 1252-1258.
24. Pei, M. H.; Whelan, M. J.; Halford, N. G.; Royle, D. J., 1997: Distinction between stem- and leaf-infecting forms of Melampsora rust on Salix viminalis using RAPD markers. Mycol. Res. 101, 7-10.
25. Pinon, J., 1973: Les rouilles du Peuplier en France: systématique et répartition du stade urédien. Eur. J. For. Pathol. 3, 221-228.
26. Pinon, J., 1986: Situation of Melampsora medusae in Europe. Bull. OEPP 16, 547-551.
27. Pinon, J., 1991: Eléments de répartition des rouilles des peupliers cultivés en France. Comptes-Rendus de l'Académie d'Agriculture de France 77, 109-115.
28. Pinon, J.; Frey, P., 2005: Interactions between poplar clones and Melampsora populations and their implications for breeding for durable resistance. In: Rust diseases of Willow and Poplar. Ed. by Pei, M. H.; McCracken, A. R. Wallingford: CAB International, pp. 139-154.
29. Pinon, J.; Frey, P.; Husson, C., 2006: Wettability of poplar leaves influences dew formation and infection by Melampsora larici-populina. Plant Dis. 90, 177-184.
30. Pinon, J.; Berthelot, A.; Fabre, B., 2011: Comportement des cultivars de Peuplier envers la rouille. Rev. For. Fr. 63, 333-346.
31. Pu, Y. Q.; Kosa, M.; Kalluri, U. C.; Tuskan, G. A.; Ragauskas, A. J., 2011: Challenges of the utilization of wood polymers: how can they be overcome? Appl. Microbiol. Biotechnol. 91, 1525-1536.
32. Royle, D. J.; Ostry, M. E., 1995: Disease and pest control in the bioenergy crops poplar and willow. Biomass Bioenergy 9, 69-79.
33. Schoch, C. L.; Seifert, K. A.; Huhndorf, S.; Robert, V.; Spouge, J. L.; Levesque, C. A.; Chen, W.; Fungal Barcoding Consortium, 2012: Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc. Nat. Acad. Sci. 109, 6241-6246.
34. Swana, J.; Yang, Y.; Behnam, M.; Thompson, R., 2011: An analysis of net energy production and feedstock availability for biobutanol and bioethanol. Bioresource Technol. 102, 2112-2117.
35. Vande Walle, I.; Van Camp, N.; Van de Casteele, L.; Verheyen, K.; Lemeur, R., 2007: Short-rotation forestry of birch, maple, poplar and willow in Flanders (Belgium) I - Biomass production after 4 years of tree growth. Biomass Bioenergy 31, 267-275.
36. Vialle, A.; Frey, P.; Hambleton, S.; Bernier, L.; Hamelin, R. C., 2011: Poplar rust systematics and refinement of Melampsora species delineation. Fungal Divers. 50, 227-248.
37. Vialle, A.; Feau, N.; Frey, P.; Bernier, L.; Hamelin, R. C., 2012: Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi. Mol. Phylogenet. Evol. (in press).
38. Walker, J.; Hartigan, D.; Bertus, A. L., 1974: Poplar rusts in Australia with comments on potential conifer rusts. Eur. J. For. Pathol. 4, 100-118.
39. White, T. J.; Bruns, T.; Lee, S.; Taylor, J., 1990: Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Method and Applications. Ed. by Innis, M. A.; Gelfand, D. H.; Sninsky, J. J.; White, T. J. New-York: Academic Press, pp. 315-322.
40. Widin, K. D.; Schipper Jr, A. L., 1981: Effect of Melampsora medusae leaf rust infection on yield of hybrid poplars in the north-central United States. Eur. J. For. Pathol. 11, 438-448.
41. Wilkinson, A. G.; Spiers, A. G., 1976: Introduction of poplar rusts Melampsora larici-populina and Melampsora medusae to New-Zealand and their subsequent distribution. N. Z. J. Sci. 19, 195-198.