메뉴 건너뛰기




Volumn 65, Issue 2, 2013, Pages 371-383

Profiling Bacterial Diversity and Taxonomic Composition on Speleothem Surfaces in Kartchner Caverns, AZ

Author keywords

[No Author keywords available]

Indexed keywords

ACIDOBACTERIA; ACTINOBACTERIA; BACTERIA (MICROORGANISMS); PROTEOBACTERIA;

EID: 84873523147     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-012-0143-6     Document Type: Article
Times cited : (77)

References (56)
  • 1
    • 0028561259 scopus 로고
    • Microbiological characterization of a sulfide-rich groundwater ecosystem
    • Sarbu SM, Kinkle BK, Vlasceanu L, Kane TC, Popa R (1994) Microbiological characterization of a sulfide-rich groundwater ecosystem. Geomicrobiol J 12: 175-182.
    • (1994) Geomicrobiol J , vol.12 , pp. 175-182
    • Sarbu, S.M.1    Kinkle, B.K.2    Vlasceanu, L.3    Kane, T.C.4    Popa, R.5
  • 2
    • 77956592342 scopus 로고    scopus 로고
    • Community structure of subsurface biofilms in the thermal sulfidic caves of Acquasanta Terme, Italy
    • Jones DS, Tobler DJ, Schaperdoth I, Mainiero M, Macalady JL (2010) Community structure of subsurface biofilms in the thermal sulfidic caves of Acquasanta Terme, Italy. Appl Environ Microbiol 76: 5902-5910.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 5902-5910
    • Jones, D.S.1    Tobler, D.J.2    Schaperdoth, I.3    Mainiero, M.4    Macalady, J.L.5
  • 5
    • 0004199691 scopus 로고    scopus 로고
    • Kartchner Caverns, Arizona
    • C. A. Hill and P. Forti (Eds.), Huntsville, AL: National Speleological Society
    • Hill CA, Forti P (1997) Kartchner Caverns, Arizona. In: Hill CA, Forti P (eds) Cave minerals of the world. National Speleological Society, Huntsville, AL, pp 350-354.
    • (1997) Cave Minerals of the World , pp. 350-354
    • Hill, C.A.1    Forti, P.2
  • 6
    • 43349088581 scopus 로고    scopus 로고
    • Oxidation-reduction chemistry of Lechuguilla Cave seepage
    • Levy DB (2007) Oxidation-reduction chemistry of Lechuguilla Cave seepage. J Cave Karst Stud 69: 351-358.
    • (2007) J Cave Karst Stud , vol.69 , pp. 351-358
    • Levy, D.B.1
  • 7
    • 0033134732 scopus 로고    scopus 로고
    • Microbiological study of the dripping waters in Altamira cave (Santillana del Mar, Spain)
    • Laiz L, Groth I, Gonzalez I, Saiz-Jimenez C (1999) Microbiological study of the dripping waters in Altamira cave (Santillana del Mar, Spain). J Microbiol Meth 36: 129-138.
    • (1999) J Microbiol Meth , vol.36 , pp. 129-138
    • Laiz, L.1    Groth, I.2    Gonzalez, I.3    Saiz-Jimenez, C.4
  • 11
    • 0842346891 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacteria associated with Paleolithic paintings and surrounding rock walls in two Spanish caves (Llonin and La Garma)
    • Schabereiter-Gurtner C, Saiz-Jimenez C, Pinar G, Lubitz W, Rolleke S (2004) Phylogenetic diversity of bacteria associated with Paleolithic paintings and surrounding rock walls in two Spanish caves (Llonin and La Garma). FEMS Microbiol Ecol 47: 235-247.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 235-247
    • Schabereiter-Gurtner, C.1    Saiz-Jimenez, C.2    Pinar, G.3    Lubitz, W.4    Rolleke, S.5
  • 12
    • 34547223004 scopus 로고    scopus 로고
    • The impact of host rock geochemistry on bacterial community structure in oligotrophic cave environments
    • Barton HA, Taylor NM, Kreate MP, Springer AC, Oehrle SA, Bertog JL (2007) The impact of host rock geochemistry on bacterial community structure in oligotrophic cave environments. Int J Speleol 36: 93-104.
    • (2007) Int J Speleol , vol.36 , pp. 93-104
    • Barton, H.A.1    Taylor, N.M.2    Kreate, M.P.3    Springer, A.C.4    Oehrle, S.A.5    Bertog, J.L.6
  • 13
    • 0033495706 scopus 로고    scopus 로고
    • Microclimate study of Kartchner Caverns, Arizona
    • Buecher RH (1999) Microclimate study of Kartchner Caverns, Arizona. J Cave Karst Stud 61: 108-120.
    • (1999) J Cave Karst Stud , vol.61 , pp. 108-120
    • Buecher, R.H.1
  • 15
    • 0033507635 scopus 로고    scopus 로고
    • Invertebrate cave fauna of Kartchner Caverns, Arizona
    • Welbourn WC (1999) Invertebrate cave fauna of Kartchner Caverns, Arizona. J Cave Karst Stud 61: 93-101.
    • (1999) J Cave Karst Stud , vol.61 , pp. 93-101
    • Welbourn, W.C.1
  • 17
    • 78751706520 scopus 로고    scopus 로고
    • Effect of arbuscular mycorrhizal fungi on plant biomass and the rhizosphere microbial community structure of mesquite grown in acidic lead/zinc mine tailings
    • Solis-Dominguez FA, Valentin-Vargas A, Chorover J, Maier RM (2011) Effect of arbuscular mycorrhizal fungi on plant biomass and the rhizosphere microbial community structure of mesquite grown in acidic lead/zinc mine tailings. Sci Total Environ 409: 1009-1016.
    • (2011) Sci Total Environ , vol.409 , pp. 1009-1016
    • Solis-Dominguez, F.A.1    Valentin-Vargas, A.2    Chorover, J.3    Maier, R.M.4
  • 18
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Meth 55: 541-555.
    • (2003) J Microbiol Meth , vol.55 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 23
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 25
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (Eds.), Chichester, UK: Wiley
    • Lane D (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, UK, pp 115-173.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-173
    • Lane, D.1
  • 27
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 30
    • 0029025721 scopus 로고
    • Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
    • Bond PL, Hugenholtz P, Keller J, Blackall LL (1995) Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 61: 1910-1916.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3    Blackall, L.L.4
  • 32
    • 23744506517 scopus 로고    scopus 로고
    • Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia
    • Papineau D, Walker JJ, Mojzsis SJ, Pace NR (2005) Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia. Appl Environ Microbiol 71: 4822-4832.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4822-4832
    • Papineau, D.1    Walker, J.J.2    Mojzsis, S.J.3    Pace, N.R.4
  • 33
    • 0025870605 scopus 로고
    • Description of the erythromycin-producing bacterium Arthrobacter sp. Strain Nrrl-B-3381 as Aeromicrobium erythreum gen. nov., sp. nov
    • Miller ES, Woese CR, Brenner S (1991) Description of the erythromycin-producing bacterium Arthrobacter sp. Strain Nrrl-B-3381 as Aeromicrobium erythreum gen. nov., sp. nov. Int J Syst Bacteriol 41: 363-368.
    • (1991) Int J Syst Bacteriol , vol.41 , pp. 363-368
    • Miller, E.S.1    Woese, C.R.2    Brenner, S.3
  • 34
    • 1542401220 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of Archaea and Bacteria in Wind Cave, South Dakota
    • Chelius MK, Moore JC (2004) Molecular phylogenetic analysis of Archaea and Bacteria in Wind Cave, South Dakota. Geomicrobiol J 21: 123-134.
    • (2004) Geomicrobiol J , vol.21 , pp. 123-134
    • Chelius, M.K.1    Moore, J.C.2
  • 35
    • 34248196656 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacteria in an earth-cave in Guizhou Province, Southwest of China
    • Zhou JP, Gu YQ, Zou CS, Mo MH (2007) Phylogenetic diversity of bacteria in an earth-cave in Guizhou Province, Southwest of China. J Microbiol 45: 105-112.
    • (2007) J Microbiol , vol.45 , pp. 105-112
    • Zhou, J.P.1    Gu, Y.Q.2    Zou, C.S.3    Mo, M.H.4
  • 36
    • 0742322930 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of a bacterial community in an oligotrophic cave environment
    • Barton HA, Taylor RM, Pace NR (2004) Molecular phylogenetic analysis of a bacterial community in an oligotrophic cave environment. Geomicrobiol J 21: 11-20.
    • (2004) Geomicrobiol J , vol.21 , pp. 11-20
    • Barton, H.A.1    Taylor, R.M.2    Pace, N.R.3
  • 38
    • 27144525864 scopus 로고    scopus 로고
    • Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira cave using 23S rRNA sequence analyses
    • Zimmermann J, Gonzalez JM, Saiz-Jimenez C, Ludwig W (2005) Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira cave using 23S rRNA sequence analyses. Geomicrobiol J 22: 379-388.
    • (2005) Geomicrobiol J , vol.22 , pp. 379-388
    • Zimmermann, J.1    Gonzalez, J.M.2    Saiz-Jimenez, C.3    Ludwig, W.4
  • 39
    • 39649094129 scopus 로고    scopus 로고
    • Promotion of growth of bean (Phaseolus vulgaris L.) in a calcareous soil by a phosphate-solubilizing, rhizosphere-competent isolate of Micromonospora endolithica
    • El-Tarabily KA, Nassar AH, Sivasithamparam K (2008) Promotion of growth of bean (Phaseolus vulgaris L.) in a calcareous soil by a phosphate-solubilizing, rhizosphere-competent isolate of Micromonospora endolithica. Appl Soil Ecol 39: 161-171.
    • (2008) Appl Soil Ecol , vol.39 , pp. 161-171
    • El-Tarabily, K.A.1    Nassar, A.H.2    Sivasithamparam, K.3
  • 40
    • 84862318622 scopus 로고    scopus 로고
    • Comparative analysis of yellow microbial communities growing on the walls of geographically distinct caves indicates a common core of microorganisms involved in their formation
    • Porca E, Jurado V, Zgur-Bertok D, Saiz-Jimenez C, Pasic L (2012) Comparative analysis of yellow microbial communities growing on the walls of geographically distinct caves indicates a common core of microorganisms involved in their formation. FEMS Microbiol Ecol 81: 255-266.
    • (2012) FEMS Microbiol Ecol , vol.81 , pp. 255-266
    • Porca, E.1    Jurado, V.2    Zgur-Bertok, D.3    Saiz-Jimenez, C.4    Pasic, L.5
  • 41
    • 27844525627 scopus 로고
    • The oxidative assimilation of sugars and related substances by Pseudomonas saccharophila with a contribution to the problem of the direct respiration of di- and polysaccharides
    • Doudoroff M (1940) The oxidative assimilation of sugars and related substances by Pseudomonas saccharophila with a contribution to the problem of the direct respiration of di- and polysaccharides. Enzymologia 9: 59-72.
    • (1940) Enzymologia , vol.9 , pp. 59-72
    • Doudoroff, M.1
  • 42
    • 0022650558 scopus 로고
    • Nitrogen fixation by Pseudomonas saccharophila Doudoroff ATCC 15946
    • Barraquio WL, Padre BC, Watanabe I, Knowles R (1986) Nitrogen fixation by Pseudomonas saccharophila Doudoroff ATCC 15946. J Gen Microbiol 132: 237-241.
    • (1986) J Gen Microbiol , vol.132 , pp. 237-241
    • Barraquio, W.L.1    Padre, B.C.2    Watanabe, I.3    Knowles, R.4
  • 43
    • 0018462539 scopus 로고
    • 2-uptake-positive strains of Rhizobium japonicum in an atmosphere supplied with hydrogen gas
    • 2-uptake-positive strains of Rhizobium japonicum in an atmosphere supplied with hydrogen gas. P Natl Acad Sci USA 76: 1788-1792.
    • (1979) P Natl Acad Sci USA , vol.76 , pp. 1788-1792
    • Hanus, F.J.1    Maier, R.J.2    Evans, H.J.3
  • 44
    • 53849149309 scopus 로고    scopus 로고
    • Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth
    • Franck WL, Chang WS, Qiu J, Sugawara M, Sadowsky MJ, Smith SA, Stacey G (2008) Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth. J Bacteriol 190: 6697-6705.
    • (2008) J Bacteriol , vol.190 , pp. 6697-6705
    • Franck, W.L.1    Chang, W.S.2    Qiu, J.3    Sugawara, M.4    Sadowsky, M.J.5    Smith, S.A.6    Stacey, G.7
  • 45
    • 0029121005 scopus 로고
    • A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium. Nitrospira moscoviensis sp. nov. and its phylogenetic relationship
    • Ehrich S, Behrens D, Lebedeva E, Ludwig W, Bock E (1995) A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium. Nitrospira moscoviensis sp. nov. and its phylogenetic relationship. Arch Microbiol 164: 16-23.
    • (1995) Arch Microbiol , vol.164 , pp. 16-23
    • Ehrich, S.1    Behrens, D.2    Lebedeva, E.3    Ludwig, W.4    Bock, E.5
  • 46
    • 0034026744 scopus 로고    scopus 로고
    • Leptospirillum gen. nov. (ex Markosyan 1972), nom. rev., including Leptospirillum ferrooxidans sp. nov. (ex Markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp. nov. (Golovacheva et al. 1992)
    • Hippe H (2000) Leptospirillum gen. nov. (ex Markosyan 1972), nom. rev., including Leptospirillum ferrooxidans sp. nov. (ex Markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp. nov. (Golovacheva et al. 1992). Int J Syst Evol Microbiol 50: 501-503.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 501-503
    • Hippe, H.1
  • 47
    • 79953180965 scopus 로고    scopus 로고
    • Mobilization of metals from pristine mineral soil by nitrifying and sulfur-oxidizing bacteria-the leaching potential of indigenous culture enrichments
    • Sonnleitner R, Redl B, Merschak P, Schinner F (2011) Mobilization of metals from pristine mineral soil by nitrifying and sulfur-oxidizing bacteria-the leaching potential of indigenous culture enrichments. Geomicrobiol J 28: 212-220.
    • (2011) Geomicrobiol J , vol.28 , pp. 212-220
    • Sonnleitner, R.1    Redl, B.2    Merschak, P.3    Schinner, F.4
  • 48
    • 0029684178 scopus 로고    scopus 로고
    • Polaromonas vacuolata gen. nov., sp. nov., a psychrophilic, marine, gas vacuolate bacterium from Antarctica
    • Irgens RL, Gosink JJ, Staley JT (1996) Polaromonas vacuolata gen. nov., sp. nov., a psychrophilic, marine, gas vacuolate bacterium from Antarctica. Int J Syst Bacteriol 46: 822-826.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 822-826
    • Irgens, R.L.1    Gosink, J.J.2    Staley, J.T.3
  • 49
    • 22144445304 scopus 로고    scopus 로고
    • Diversity of bacteria growing in natural mineral water after bottling
    • Loy A, Beisker W, Meier H (2005) Diversity of bacteria growing in natural mineral water after bottling. Appl Environ Microbiol 71: 3624-3632.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3624-3632
    • Loy, A.1    Beisker, W.2    Meier, H.3
  • 51
    • 2942587229 scopus 로고    scopus 로고
    • Cross-species identification of proteins from proteome profiles of the marine oligotrophic ultramicrobacterium, Sphingopyxis alaskensis
    • Ostrowski M, Fegatella F, Wasinger V, Guilhaus M, Corthals GL, Cavicchioli R (2004) Cross-species identification of proteins from proteome profiles of the marine oligotrophic ultramicrobacterium, Sphingopyxis alaskensis. Proteomics 4: 1779-1788.
    • (2004) Proteomics , vol.4 , pp. 1779-1788
    • Ostrowski, M.1    Fegatella, F.2    Wasinger, V.3    Guilhaus, M.4    Corthals, G.L.5    Cavicchioli, R.6
  • 52
  • 53
    • 0032900365 scopus 로고    scopus 로고
    • Selective isolation and distribution of Sporichthya strains in soil
    • Suzuki S, Okuda T, Komatsubara S (1999) Selective isolation and distribution of Sporichthya strains in soil. Appl Environ Microbiol 65: 1930-1935.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1930-1935
    • Suzuki, S.1    Okuda, T.2    Komatsubara, S.3
  • 54
    • 11144330210 scopus 로고    scopus 로고
    • Involvement of microorganisms in the formation of carbonate speleothems in the Cervo Cave (L'Aquila-Italy)
    • Cacchio P, Contento R, Ercole C, Cappuccio G, Martinez MP, Lepidi A (2004) Involvement of microorganisms in the formation of carbonate speleothems in the Cervo Cave (L'Aquila-Italy). Geomicrobiol J 21: 497-509.
    • (2004) Geomicrobiol J , vol.21 , pp. 497-509
    • Cacchio, P.1    Contento, R.2    Ercole, C.3    Cappuccio, G.4    Martinez, M.P.5    Lepidi, A.6
  • 55
    • 0344961678 scopus 로고    scopus 로고
    • Biomediated precipitation of calcium carbonate metastable phases in hypogean environments: a short review
    • Sanchez-Moral S, Canaveras JC, Laiz L, Saiz-Jimenez C, Bedoya J, Luque L (2003) Biomediated precipitation of calcium carbonate metastable phases in hypogean environments: a short review. Geomicrobiol J 20: 491-500.
    • (2003) Geomicrobiol J , vol.20 , pp. 491-500
    • Sanchez-Moral, S.1    Canaveras, J.C.2    Laiz, L.3    Saiz-Jimenez, C.4    Bedoya, J.5    Luque, L.6
  • 56
    • 84914494778 scopus 로고
    • Bacterial calcification in limestone caves
    • Danielli HMC, Edington MA (1983) Bacterial calcification in limestone caves. Geomicrobiol J 3: 1-16.
    • (1983) Geomicrobiol J , vol.3 , pp. 1-16
    • Danielli, H.M.C.1    Edington, M.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.