Diversity and structure of a sample of traditional Italian and Spanish tomato accessions

Genetic Resources and Crop Evolution

Volumn 60, Issue 2, 2013, Pages 789-798

  García Martínez, Santiago ^a   Corrado, Giandomenico ^b   Ruiz, Juan José ^a   Rao, Rosa ^b  

^a MIGUEL HERNÁNDEZ UNIVERSITY   (Spain)

^b UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

De la Pera; Muchamiel; San Marzano; Solanum lycopersicum; Sorrento

Indexed keywords

CULTIVATION; ESTIMATION METHOD; GENETIC VARIATION; GENOTYPE; MARKET DEVELOPMENT; PLANT BREEDING; POPULATION STRUCTURE; SAMPLING; STATISTICAL ANALYSIS; VEGETABLE;

ITALY; SPAIN;

LYCOPERSICON ESCULENTUM; PERA;

EID: 84873522605     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-012-9876-9     Document Type: Article

References (48)

1. Allendorf FW, Hohenlohe PA, Luikart G (2010) Genomics and the future of conservation genetics. Nat Rev Genet 11: 697-709.
2. Alonso A, García-Martínez S, Vázquez-Araujo L, Ruiz JJ, Carbonell-Barrachina AA (2010) Comparative post-harvest behaviour of traditional and virus-resistant Muchamiel tomatoes. J Sci Food Agric 90: 1056-1062.
3. Andreakis N, Giordano I, Pentangelo A, Fogliano V, Graziani G, Monti LM, Rao R (2004) DNA fingerprinting and quality traits of corbarino cherry-like tomato landraces. J Agric Food Chem 52: 3366-3371.
4. Asfaw A, Blair MW, Almekinders CJM (2009) Genetic diversity and population structure of common bean (Phaseolus vulgaris L.) landraces from the East African highlands. Theor Appl Genet 120: 1-12.
5. Brugarolas M, Martínez-Carrasco L, Martínez-Poveda A, Ruiz JJ (2009) A competitive strategy for fruit and vegetable products: traditional varieties of tomato in the local market. Span J Agric Res 7: 294-304.
6. Caramante M, Rao R, Monti LM, Corrado G (2009) Discrimination of San Marzano accessions: a comparison of minisatellite, CAPS and SSR markers in relation to morphological traits. Sci Hortic 120: 560-564.
7. Chao S, Dubcovsky J, Dvorak J, Luo MC, Baenziger S, Matnyazov R, Clark D, Talbert L, Anderson J, Dreisigacker S, Glover K, Chen J, Campbell K, Bruckner P, Rudd J, Haley S, Carver B, Perry S, Sorrells M, Akhunov E (2010) Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics 11: 727.
8. Corrado G, Imperato A, La Mura M, Perri E, Rao R (2011) Genetic diversity among olive varieties of Southern Italy and the traceability of olive oil using SSR markers. J Horticult Sci Biotechnol 86: 461-466.
9. Ercolano MR, Carli P, Soria A, Fogliano V, Frusciante L, Barone A (2008) Biochemical, sensorial and genomic profiling of traditional Italian tomato varieties. Euphytica 164: 571-582.
10. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
11. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
12. García-Gusano M, García-Martínez S, Ruiz JJ (2004) Caracterización de variedades de tomate mediante marcadores SNP. Actas de Horticultura 41: 123-126.
13. García-Martínez S, Andreani L, García-Gusano M, Geuna F, Ruiz JJ (2006) Evaluation of AFLPs and SSRs for tomato germplasm fingerprinting: utility for grouping closely related traditional cultivars. Genome 49(6): 648-656.
14. García-Martínez S, Gálvez-Sola LN, Alonso A, Agulló E, Rubio F, Ruiz JJ, Moral R (2011a) Quality assessment of tomato landraces and virus-resistant breeding lines: quick estimation by near-infrared reflectance (NIRS). J Sci Food Agric. doi: 10. 1002/jsfa. 4661.
15. García-Martínez S, Grau A, Alonso A, Rubio F, Valero M, Ruiz JJ (2011b) UMH 1200, a breeding line within the Muchamiel tomato type resistant to three viruses. HortScience 46(7): 1054-1055.
16. García-Martínez S, Grau A, Alonso A, Rubio F, Valero M, Ruiz JJ (2012) UMH 1203, a multiple-virus resistant fresh-market tomato breeding line for open field conditions. HortScience 47(1): 124-125.
17. Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
18. Kaemmer D, Weising K, Bayermann B, Börner T, Epplen JT, Kahl G (1995) Oligonucleotide fingerprinting of tomato DNA. Plant Breed 114: 12-17.
19. Lu Y, Yan J, Guimarães C, Taba S, Hao S, Gao S, Chen S, Li J, Zhang S, Vivek B, Magorokosho Z, Mugo S, Makumbi D, Parentoni S, Shah T, Rong T, Crouch J, Xu J (2009) Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms. Theor Appl Genet 120: 93-115.
20. Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Mol Ecol 3: 91-99.
21. Martínez-Carrasco L, Brugarolas M, Martínez-Poveda A, García-Martínez S, Ruiz JJ Modelling perceived quality of tomato by structural equation analysis. Br Food J (in press).
22. Mazzucatto A, Papa R, Bitochi E, Mosconi P, Nanni L, Negri V, Enea-Picarella M, Siligato F, Soressi GP, Tiranti B, Veronesi F (2009) Genetic diversity, structure and marker-trait associations in a collection of Italian tomato (Solanum lycopersicum L.) landraces. Theor Appl Genet 116: 657-669.
23. Melchiade D, Foroni I, Corrado G, Santangelo I, Rao R (2007) Authentication of the 'Annurca' apple in agro-food chain by amplification of microsatellite loci. Food Biotech 21: 33-43.
24. Miller JC, Tanksley SD (1990) RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theor Appl Genet 80: 437-448.
25. Monti LM, Santangelo E, Corrado G, Rao R, Soressi GP, Scarascia-Magnozza GT (2004) Il San Marzano: problematiche e prospettive in relazione alla sua salvaguardia e alla necessita di interventi genetici. Agroindustria 3: 97-104.
26. Muñoz-Falcón JE, Prohens J, Vilanova S, Nuez F (2008) Characterization, diversity, and relationships of the Spanish striped (Listada) eggplants: a model for the enhancement and protection of local heirlooms. Euphytica 164: 405-419.
27. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269-5273.
28. Paran I, Horowitz M, Zamir D, Wolf S (1995) Random amplified polymorphic DNA markers are useful for purity determination of tomato hybrids. HortScience 30(2): 377.
29. Park YH, West MAL, St Clair DA (2004) Evaluation of AFLPs for germplasm fingerprinting and assessment of genetic diversity in cultivars of tomato (Lycopersicon esculentum L.). Genome 47: 510-518.
30. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
31. 4 DNA fingerprinting identifies morphologically characterized San Marzano tomato plants. Plant Breed 125: 173-176.
32. Rohlf FJ (1998) NTSYS-pc: Numerical taxonomy and multivariate analysis system, version 2. 0, user guide. Exeter Software, New York.
33. Ruiz JJ, García-Martínez S (2009) Tomato varieties 'Muchamiel' and 'De la pera' from the southeast of Spain: Genetic improvement to promote on-farm conservation. In: Vetelainen M, Negri V, Maxted N (eds) European landrace: on-farm conservation, management and use. Bioversity Technical Bulletin no 15: 171-176.
34. Ruiz JJ, Alonso A, García-Martínez S, Valero M, Blasco P, Ruiz-Bevia F (2005a) Quantitative analysis of flavour volatiles detects differences among closely related traditional cultivars of tomato. J Sci Food Agric 85: 54-60.
35. Ruiz JJ, García-Martínez S, Picó B, Gao M, Quiros CF (2005b) Genetic variability and relationship of closely related Spanish traditional varieties of tomato as detected by SRAP and SSR markers. J Am Soc Hortic Sci 130(1): 88-94.
36. Ruiz JJ, Martínez N, Valero M, García-Martínez S, Moral R, Serrano M (2005c) Micronutrient composition and quality characteristics of traditional tomato cultivars in the South-East of Spain. Commun Soil Sci Plant Anal 36: 649-660.
37. Ruiz JJ, Valero M, García-Martínez S, Serrano M, Moral R (2006) Effect of recent genetic improvement on some analytical parameters of tomato fruit quality. Commun Soil Sci Plant Anal 37: 2647-2658.
38. Sambrook J, Fritschi EF, Maniatis T (1989) Molecular clonning: a laboratory manual. Cold Spring Harbor Laboratory, New York.
39. Sim SC, Robbins MD, Chilcott C, Zhu T, Francis DM (2009) Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L. reveals patterns of SNP variation associated with breeding. BMC Genomics 10: 10.
40. Sim SC, Robbins MD, van Deynze A, Michel AP, Francis DM (2011) Population structure and genetic differentiation associated with breeding history and selection in tomato (Solanum lycopersicum L.). Heredity 106: 927-935.
41. Smulders MJM, Bredemeijer G, Rus-Kortekaas W, Arens P, Vosman B (1997) Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor Appl Genet 97: 264-272.
42. Sneath PHA, Sokal RR (1973) Numerical Taxonomy. Freeman, San Francisco.
43. Terzopoulos PJ, Bebeli PJ (2010) Phenotypic diversity in Greek tomato (Solanum lycopersicum L.) landraces. Sci Hortic 126(2): 138-144.
44. Vekemans X (2002) AFLP-SURV, version 1. 0. Distributed by the author. Laboratoire de Genetique et Ecologie Vegetale, Universite′ Libre de Bruxelles, Belgium.
45. Vosman B, Arens P (1997) Molecular characterization of GATA/GACA microsatellite repeats in tomato. Genome 40: 25-33.
46. Yang WC, Bai XD, Kabelka E, Eaton C, Kamoun S, van der Knaap E, Francis D (2004) Discovery of single nucleotide polymorphisms in Lycopersicon esculentum by computer aided analysis of expressed sequence tags. Mol Breed 14: 21-34.
47. Yi SS, Jatoi SA, Fujimura T, Yamanaka S, Watanabe J, Watanabe KN (2008) Potential loss of unique genetic diversity in tomato landraces by genetic colonization of modern cultivars at a non-center of origin. Plant Breed 127: 189-196.
48. Zeven AC (2002) Traditional maintenance breeding of landraces: 2. Practical and theoretical considerations on maintenance of variation of landraces by farmers and gardeners. Euphytica 123: 147-158.