A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability

NeuroImage

Volumn 71, Issue , 2013, Pages 196-206

  Calabrese, Evan ^a,b   Badea, Alexandra ^a   Watson, Charles ^c,d   Johnson, G Allan ^a,b  

^a DUKE UNIVERSITY MEDICAL CENTER   (United States)

^b Duke University   (United States)

^c CURTIN UNIVERSITY   (Australia)

^d NEUROSCIENCE RESEARCH AUSTRALIA   (Australia)

Author keywords

Atlas; Brain; DTI; MRI; Neurodevelopment; Rat

Indexed keywords

ACCURACY; ANIMAL EXPERIMENT; ARTICLE; ATLAS; BRAIN DEVELOPMENT; BRAIN FUNCTION; BRAIN REGION; BRAIN SIZE; CONTROLLED STUDY; GROWTH RATE; HISTOLOGY; IMAGE ANALYSIS; IMAGE DISPLAY; MALE; MORPHOMETRICS; NEUROANATOMY; NEUROIMAGING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; POSTNATAL DEVELOPMENT; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RAT; VOLUMETRY;

EID: 84873511075     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.01.017     Document Type: Article

References (51)

1. Arsigny V., Fillard P., Pennec X., Ayache N. Log-Euclidean metrics for fast and simple calculus on diffusion tensors. Magn. Reson. Med. 2006, 56:411-421.
2. Ashwell K.W.S., Paxinos G. Atlas of the Developing Rat Nervous System 2008, Elsevier Academic Press, San Diego.
3. Avants B.B., Epstein C.L., Grossman M., Gee J.C. Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 2008, 12:26-41.
4. Avants B.B., Tustison N.J., Song G., Cook P.A., Klein A., Gee J.C. A reproducible evaluation of ANTs similarity metric performance in brain image registration. NeuroImage 2011, 54:2033-2044.
5. Badea A., Ali-Sharief A.A., Johnson G.A. Morphometric analysis of the C57BL/6J mouse brain. NeuroImage 2007, 37:683-693.
6. Bayer S.A. Development of the hippocampal region in the rat. II. Morphogenesis during embryonic and early postnatal life. J. Comp. Neurol. 1980, 190:115-134.
7. Boss B.D., Turlejski K., Stanfield B.B., Cowan W.M. On the numbers of neurons in fields CA1 and CA3 of the hippocampus of Sprague-Dawley and Wistar rats. Brain Res. 1987, 406:280-287.
8. Calabrese E., Johnson G.A., Watson C. An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI. NeuroImage 2012, 67:375-384.
9. Calvo J., Boya J. Postnatal evolution of the rat pineal gland: light microscopy. J. Anat. 1984, 138(Pt 1):45-53.
10. Charles River Wistar Rat Page Charles River Wistar Rat Page 2012, Charles River Laboratories, Inc., (URL http://www.criver.com/FR-FR/PRODSERV/BYTYPE/RESMODOVER/RESMOD/Pages/WistarRat.aspx).
11. Chuang N., Mori S., Yamamoto A., Jiang H., Ye X., Xu X., Richards L.J., Nathans J., Miller M.I., Toga A.W., Sidman R.L., Zhang J. An MRI-based atlas and database of the developing mouse brain. NeuroImage 2011, 54:80-89.
12. Courchesne E., Karns C.M., Davis H.R., Ziccardi R., Carper R.A., Tigue Z.D., Chisum H.J., Moses P., Pierce K., Lord C., Lincoln A.J., Pizzo S., Schreibman L., Haas R.H., Akshoomoff N.A., Courchesne R.Y. Unusual brain growth patterns in early life in patients with autistic disorder: an MRI study. Neurology 2001, 57:245-254.
13. Donaldson H.H. The rat: reference tables and data for the albino rat (Mus norvegicus albinus) and the Norway rat (Mus norvegicus) 1915, The Wistar Institute of Anatomy and Biology, Philadelphia.
14. Donaldson H.H., Hatai S. A comparison of the Norway rat with the albino rat in respect to body length, brain weight, spinal cord weight and the percentage of water in both the brain and the spinal cord. J. Comp. Neurol. 1911, 21:417-458.
15. Eayrs J.T., Goodhead B. Postnatal development of the cerebral cortex in the rat. J. Anat. 1959, 93:385.
16. Friess S.H., Ichord R.N., Owens K., Ralston J., Rizol R., Overall K.L., Smith C., Helfaer M.A., Margulies S.S. Neurobehavioral functional deficits following closed head injury in the neonatal pig. Exp. Neurol. 2007, 204:234-243.
17. Giedd J.N., Rapoport J.L. Structural MRI of pediatric brain development: what have we learned and where are we going?. Neuron 2010, 67:728-734.
18. Giorgio A., Watkins K.E., Chadwick M., James S., Winmill L., Douaud G., De Stefano N., Matthews P.M., Smith S.M., Johansen-Berg H., James A.C. Longitudinal changes in grey and white matter during adolescence. NeuroImage 2010, 49:94-103.
19. Hazlett H.C., Poe M., Gerig G., Smith R.G., Provenzale J., Ross A., Gilmore J., Piven J. Magnetic resonance imaging and head circumference study of brain size in autism: birth through age 2years. Arch. Gen. Psychiatry 2005, 62:1366-1376.
20. Herrmann M., King K., Weitzman M. Prenatal tobacco smoke and postnatal secondhand smoke exposure and child neurodevelopment. Curr. Opin. Pediatr. 2008, 20:184-190.
21. Hillman H., Deutsch K. Area changes in slices of rat brain during preparation for histology or electron microscopy. J. Microsc. 1978, 114:77-84.
22. Jaaro-Peled H., Hayashi-Takagi A., Seshadri S., Kamiya A., Brandon N.J., Sawa A. Neurodevelopmental mechanisms of schizophrenia: understanding disturbed postnatal brain maturation through neuregulin-1-ErbB4 and DISC1. Trends Neurosci. 2009, 32:485-495.
23. Jackson C.M. Postnatal growth and variability of the body and of the various organs in the albino rat. Am. J. Anat. 1913, 15:1-68.
24. Jailer J.W. The maturation of the pituitary-adrenal axis in the newborn rat. Endocrinology 1950, 46:420-425.
25. Johnson G.A., Cofer G.P., Gewalt S.L., Hedlund L.W. Morphologic phenotyping with MR microscopy: the visible mouse. Radiology 2002, 222:789-793.
26. Johnson G.A., Ali-Sharief A., Badea A., Brandenburg J., Cofer G., Fubara B., Gewalt S., Hedlund L.W., Upchurch L. High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. NeuroImage 2007, 37:82-89.
27. Johnson G.A., Calabrese E., Badea A., Paxinos G., Watson C. A multidimensional magnetic resonance histology atlas of the Wistar rat brain. NeuroImage 2012, 62:1848-1856.
28. Jolicoeur P., Cabana T., Ducharme G. A four-parameter generalization of the Gompertz curve suitable for somatic growth. Growth Dev. Aging 1992, 56:69-74.
29. Kochunov P., Lancaster J.L., Thompson P., Woods R., Mazziotta J., Hardies J., Fox P. Regional spatial normalization: toward an optimal target. J. Comput. Assist. Tomogr. 2001, 25:805-816.
30. Kochunov P., Williamson D.E., Lancaster J., Fox P., Cornell J., Blangero J., Glahn D.C. Fractional anisotropy of water diffusion in cerebral white matter across the lifespan. Neurobiol. Aging 2012, 33:9-20.
31. Kovacevic N., Henderson J.T., Chan E., Lifshitz N., Bishop J., Evans A.C., Henkelman R.M., Chen X.J. A three-dimensional MRI atlas of the mouse brain with estimates of the average and variability. Cereb. Cortex 2005, 15:639-645.
32. Maciag D., Simpson K.L., Coppinger D., Lu Y., Wang Y., Lin R.C.S., Paul I.A. Neonatal antidepressant exposure has lasting effects on behavior and serotonin circuitry. Neuropsychopharmacology 2006, 31:47-57.
33. Mehler C., Warnke A. Structural brain abnormalities specific to childhood-onset schizophrenia identified by neuroimaging techniques. J. Neural Transm. 2002, 109:219-234.
34. Mori S., Crain B.J., Chacko V.P., van Zijl P.C. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 1999, 45:265-269.
35. Moss M.L. Growth of the calvaria in the rat; the determination of osseous morphology. Am. J. Anat. 1954, 94:333-361.
36. Nagy Z., Westerberg H., Klingberg T. Maturation of white matter is associated with the development of cognitive functions during childhood. J. Cogn. Neurosci. 2004, 16:1227-1233.
37. Nie, B., Chen, K., Zhao, S., Liu, J., Gu, X., Yao, Q., Hui, J., Zhang, Z., Teng, G., Zhao, C., Shan, B., in press. A rat brain MRI template with digital stereotaxic atlas of fine anatomical delineations in paxinos space and its automated application in voxel-wise analysis. Hum Brain Mapp. http://dx.doi.org/10.1002/hbm.21511.
38. O'Leary-Moore S.K., Parnell S.E., Lipinski R.J., Sulik K.K. Magnetic resonance-based imaging in animal models of fetal alcohol spectrum disorder. Neuropsychol. Rev. 2011, 21:167-185.
39. Panzer A. The neuroendocrinological sequelae of stress during brain development: the impact of child abuse and neglect. Afr. J. Psychiatry (Johannesbg) 2008, 11:29-34.
40. Paxinos G., Watson C. The Rat Brain in Stereotaxic Coordinates 2007, Elsevier Academic Press, San Diego. 6th ed.
41. Puelles L., Martinez-de-la-Torre M., Paxinos G., Watson C., Martinez S. The Chick Brain in Stereotaxic Coordinates: an Atlas Featuring Neuromeric Subdivisions and Mammalian Homologies 2007, Elsevier Academic Press, San Diego.
42. Ramachandra R., Subramanian T. Atlas of the Neonatal Rat Brain 2011, CRC Press.
43. Schwarz A.J., Danckaert A., Reese T., Gozzi A., Paxinos G., Watson C., Merlo-Pich E.V., Bifone A. A stereotaxic MRI template set for the rat brain with tissue class distribution maps and co-registered anatomical atlas: application to pharmacological MRI. NeuroImage 2006, 32:538-550.
44. Sherwood N., Timiras P. A Stereotaxic Atlas of the Developing Rat Brain 1970, University of California Press.
45. Smith C.G. The volume of the neocortex of the albino rat and the changes it undergoes with age after birth. J. Comp. Neurol. 1934, 60:319-347.
46. Stejskal E.O., Tanner J.E. Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J. Chem. Phys. 1965, 42:288-292.
47. Toga A.W., Thompson P.M., Sowell E.R. Mapping brain maturation. Trends Neurosci. 2006, 29:148-159.
48. Valdés-Hernández P.A., Sumiyoshi A., Nonaka H., Haga R., Aubert-Vásquez E., Ogawa T., Iturria-Medina Y., Riera J.J., Kawashima R. An in vivo MRI template set for morphometry, tissue segmentation, and fMRI localization in rats. Front. Neuroinformatics 2011, 5:26.
49. Veraart J., Leergaard T.B., Antonsen B.T., Van Hecke W., Blockx I., Jeurissen B., Jiang Y., Van der Linden A., Johnson G.A., Verhoye M., Sijbers J. Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. NeuroImage 2011, 58(4):975-983.
50. Zhang J., Miller M.I., Plachez C., Richards L.J., Yarowsky P., van Zijl P., Mori S. Mapping postnatal mouse brain development with diffusion tensor microimaging. NeuroImage 2005, 26:1042-1051.
51. Zhang J., Richards L.J., Miller M.I., Yarowsky P., van Zijl P., Mori S. Characterization of mouse brain and its development using diffusion tensor imaging and computational techniques. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2006, 1:2252-2255.