-
1
-
-
0026586396
-
RMA/S cells present endogenously synthesized cytosolic proteins to class I-restricted cytotoxic T lymphocytes
-
Esquivel F, Yewdell J, Bennink J, (1992) RMA/S cells present endogenously synthesized cytosolic proteins to class I-restricted cytotoxic T lymphocytes. The Journal of Experimental Medicine 175: 163-168.
-
(1992)
The Journal of Experimental Medicine
, vol.175
, pp. 163-168
-
-
Esquivel, F.1
Yewdell, J.2
Bennink, J.3
-
2
-
-
33644872508
-
Characterization of Rapidly Degraded Polypeptides in Mammalian Cells Reveals a Novel Layer of Nascent Protein Quality Control
-
Qian S-B, Princiotta MF, Bennink JR, Yewdell JW, (2006) Characterization of Rapidly Degraded Polypeptides in Mammalian Cells Reveals a Novel Layer of Nascent Protein Quality Control. Journal of Biological Chemistry 281: 392-400.
-
(2006)
Journal of Biological Chemistry
, vol.281
, pp. 392-400
-
-
Qian, S.-B.1
Princiotta, M.F.2
Bennink, J.R.3
Yewdell, J.W.4
-
3
-
-
0030239693
-
Commentary: Defective ribosomal products (DRiPs): a major source of antigenic peptides for MHC class I molecules?
-
Yewdell J, Anton L, Bennink J, (1996) Commentary: Defective ribosomal products (DRiPs): a major source of antigenic peptides for MHC class I molecules? J Immunol 157: 1823-1826.
-
(1996)
J Immunol
, vol.157
, pp. 1823-1826
-
-
Yewdell, J.1
Anton, L.2
Bennink, J.3
-
4
-
-
82455192402
-
DRiPs solidify: progress in understanding endogenous MHC class I antigen processing
-
Yewdell JW, (2011) DRiPs solidify: progress in understanding endogenous MHC class I antigen processing. Trends in Immunology 32: 548-558.
-
(2011)
Trends in Immunology
, vol.32
, pp. 548-558
-
-
Yewdell, J.W.1
-
5
-
-
70849104780
-
Innate immune and chemically triggered oxidative stress modifies translational fidelity
-
Netzer N, Goodenbour JM, David A, Dittmar KA, Jones RB, et al. (2009) Innate immune and chemically triggered oxidative stress modifies translational fidelity. Nature 462: 522-526.
-
(2009)
Nature
, vol.462
, pp. 522-526
-
-
Netzer, N.1
Goodenbour, J.M.2
David, A.3
Dittmar, K.A.4
Jones, R.B.5
-
6
-
-
0028893927
-
Major Histocompatibility Class I Molecules Can Present Cryptic Translation Products to T-cells
-
Shastri N, Nguyen V, Gonzalez F, (1995) Major Histocompatibility Class I Molecules Can Present Cryptic Translation Products to T-cells. Journal of Biological Chemistry 270: 1088-1091.
-
(1995)
Journal of Biological Chemistry
, vol.270
, pp. 1088-1091
-
-
Shastri, N.1
Nguyen, V.2
Gonzalez, F.3
-
7
-
-
34250898483
-
Viral Alteration of Cellular Translational Machinery Increases Defective Ribosomal Products
-
Berglund P, Finzi D, Bennink JR, Yewdell JW, (2007) Viral Alteration of Cellular Translational Machinery Increases Defective Ribosomal Products. J Virol 81: 7220-7229.
-
(2007)
J Virol
, vol.81
, pp. 7220-7229
-
-
Berglund, P.1
Finzi, D.2
Bennink, J.R.3
Yewdell, J.W.4
-
8
-
-
75549084463
-
The Immune Epitope Database 2.0
-
Vita R, Zarebski L, Greenbaum JA, Emami H, Hoof I, et al. (2010) The Immune Epitope Database 2.0. Nucl Acids Res 38: D854-862.
-
(2010)
Nucl Acids Res
, vol.38
-
-
Vita, R.1
Zarebski, L.2
Greenbaum, J.A.3
Emami, H.4
Hoof, I.5
-
9
-
-
33745584371
-
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules
-
Peters B, Bui H-H, Frankild S, Nielsen M, Lundegaard C, et al. (2006) A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. PLoS Comput Biol 2: e65.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Peters, B.1
Bui, H.-H.2
Frankild, S.3
Nielsen, M.4
Lundegaard, C.5
-
10
-
-
42549105195
-
Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research
-
Lin H, Ray S, Tongchusak S, Reinherz E, Brusic V, (2008) Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research. BMC Immunology 9: 8.
-
(2008)
BMC Immunology
, vol.9
, pp. 8
-
-
Lin, H.1
Ray, S.2
Tongchusak, S.3
Reinherz, E.4
Brusic, V.5
-
11
-
-
39649122106
-
HLA class I supertypes: a revised and updated classification
-
Sidney J, Peters B, Frahm N, Brander C, Sette A, (2008) HLA class I supertypes: a revised and updated classification. BMC Immunology 9: 1.
-
(2008)
BMC Immunology
, vol.9
, pp. 1
-
-
Sidney, J.1
Peters, B.2
Frahm, N.3
Brander, C.4
Sette, A.5
-
12
-
-
71949096416
-
Derivation of an amino acid similarity matrix for peptide:MHC binding and its application as a Bayesian prior
-
Kim Y, Sidney J, Pinilla C, Sette A, Peters B, (2009) Derivation of an amino acid similarity matrix for peptide:MHC binding and its application as a Bayesian prior. BMC Bioinformatics 10: 394.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 394
-
-
Kim, Y.1
Sidney, J.2
Pinilla, C.3
Sette, A.4
Peters, B.5
-
13
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
Nielsen M, Lundegaard C, Worning P, Lauemoller SL, Lamberth K, et al. (2003) Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci 12: 1007-1017.
-
(2003)
Protein Sci
, vol.12
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemoller, S.L.4
Lamberth, K.5
-
14
-
-
4444285822
-
Comparative immunopeptidomics of humans and their pathogens
-
Istrail S, Florea L, Halldorsson BV, Kohlbacher O, Schwartz RS, et al. (2004) Comparative immunopeptidomics of humans and their pathogens. Proceedings of the National Academy of Sciences of the United States of America 101: 13268-13272.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 13268-13272
-
-
Istrail, S.1
Florea, L.2
Halldorsson, B.V.3
Kohlbacher, O.4
Schwartz, R.S.5
-
15
-
-
78651412184
-
Mapping the Landscape of Host-Pathogen Coevolution: HLA Class I Binding and Its Relationship with Evolutionary Conservation in Human and Viral Proteins
-
Hertz T, Nolan D, James I, John M, Gaudieri S, et al. (2011) Mapping the Landscape of Host-Pathogen Coevolution: HLA Class I Binding and Its Relationship with Evolutionary Conservation in Human and Viral Proteins. J Virol 85: 1310-1321.
-
(2011)
J Virol
, vol.85
, pp. 1310-1321
-
-
Hertz, T.1
Nolan, D.2
James, I.3
John, M.4
Gaudieri, S.5
-
16
-
-
0842324614
-
Jump-starting the immune system: prime-boosting comes of age
-
Woodland DL, (2004) Jump-starting the immune system: prime-boosting comes of age. Trends in Immunology 25: 98-104.
-
(2004)
Trends in Immunology
, vol.25
, pp. 98-104
-
-
Woodland, D.L.1
-
17
-
-
84861695188
-
A synopsis of the existing knowledge of immunoreactivity against hepatitis C virus (HCV): a meta-analysis of the IEDB data
-
Kim Y, Vaughan K, Greenbaum J, Peters B, Grey H, et al. (2012) A synopsis of the existing knowledge of immunoreactivity against hepatitis C virus (HCV): a meta-analysis of the IEDB data. PLoS One In Press.
-
(2012)
PLoS One
-
-
Kim, Y.1
Vaughan, K.2
Greenbaum, J.3
Peters, B.4
Grey, H.5
-
18
-
-
77957162597
-
MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation
-
Calis JJA, Sanchez-Perez GF, Keşmir C, (2010) MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation. European Journal of Immunology 40: 2699-2709.
-
(2010)
European Journal of Immunology
, vol.40
, pp. 2699-2709
-
-
Calis, J.J.A.1
Sanchez-Perez, G.F.2
Keşmir, C.3
-
20
-
-
84863489486
-
Evolution of viral life-cycle in response to cytotoxic T lymphocyte-mediated immunity
-
Louzoun Y, Ganusov VV, (2012) Evolution of viral life-cycle in response to cytotoxic T lymphocyte-mediated immunity. Journal of Theoretical Biology 310: 3-13.
-
(2012)
Journal of Theoretical Biology
, vol.310
, pp. 3-13
-
-
Louzoun, Y.1
Ganusov, V.V.2
-
21
-
-
66349127784
-
Viruses selectively mutate their CD8+ T-cell epitopes'Äîa large-scale immunomic analysis
-
Vider-Shalit T, Sarid R, Maman K, Tsaban L, Levi R, et al. (2009) Viruses selectively mutate their CD8+ T-cell epitopes'Äîa large-scale immunomic analysis. Bioinformatics 25: i39-i44.
-
(2009)
Bioinformatics
, vol.25
-
-
Vider-Shalit, T.1
Sarid, R.2
Maman, K.3
Tsaban, L.4
Levi, R.5
-
22
-
-
0031663288
-
Conservation of cytotoxic T lymphocyte (CTL) epitopes as a host strategy to constrain parasite adaptation: evidence from the nef gene of human immunodeficiency virus 1 (HIV-1)
-
da Silva J, Hughes AL, (1998) Conservation of cytotoxic T lymphocyte (CTL) epitopes as a host strategy to constrain parasite adaptation: evidence from the nef gene of human immunodeficiency virus 1 (HIV-1). Molecular Biology and Evolution 15: 1259-1268.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 1259-1268
-
-
da Silva, J.1
Hughes, A.L.2
-
23
-
-
0036340475
-
Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation
-
Yusim K, Kesmir C, Gaschen B, Addo MM, Altfeld M, et al. (2002) Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation. Journal of Virology 76: 8757-8768.
-
(2002)
Journal of Virology
, vol.76
, pp. 8757-8768
-
-
Yusim, K.1
Kesmir, C.2
Gaschen, B.3
Addo, M.M.4
Altfeld, M.5
-
24
-
-
77952841173
-
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved
-
Comas I, Chakravartti J, Small PM, Galagan J, Niemann S, et al. (2010) Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved. Nat Genet 42: 498-503.
-
(2010)
Nat Genet
, vol.42
, pp. 498-503
-
-
Comas, I.1
Chakravartti, J.2
Small, P.M.3
Galagan, J.4
Niemann, S.5
-
25
-
-
78651412184
-
Mapping the Landscape of Host-Pathogen Coevolution: HLA Class I Binding and Its Relationship with Evolutionary Conservation in Human and Viral Proteins
-
Hertz T, Nolan D, James I, John M, Gaudieri S, et al. (2011) Mapping the Landscape of Host-Pathogen Coevolution: HLA Class I Binding and Its Relationship with Evolutionary Conservation in Human and Viral Proteins. The Journal of Virology 85: 1310-1321.
-
(2011)
The Journal of Virology
, vol.85
, pp. 1310-1321
-
-
Hertz, T.1
Nolan, D.2
James, I.3
John, M.4
Gaudieri, S.5
-
26
-
-
4143051195
-
Comparison of Site-Specific Rate-Inference Methods for Protein Sequences: Empirical Bayesian Methods Are Superior
-
Mayrose I, Graur D, Ben-Tal N, Pupko T, (2004) Comparison of Site-Specific Rate-Inference Methods for Protein Sequences: Empirical Bayesian Methods Are Superior. Molecular Biology and Evolution 21: 1781-1791.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1781-1791
-
-
Mayrose, I.1
Graur, D.2
Ben-Tal, N.3
Pupko, T.4
-
27
-
-
77954686958
-
A comparative study of conservation and variation scores
-
Johansson F, Toh H, (2010) A comparative study of conservation and variation scores. BMC Bioinformatics 11: 388.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 388
-
-
Johansson, F.1
Toh, H.2
-
28
-
-
57049150788
-
The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures
-
Goldenberg O, Erez E, Nimrod G, Ben-Tal N, (2009) The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures. Nucleic Acids Research 37: D323-D327.
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Goldenberg, O.1
Erez, E.2
Nimrod, G.3
Ben-Tal, N.4
|