메뉴 건너뛰기




Volumn 66, Issue 3, 2013, Pages 766-775

Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: Application to the tribe Bovini (Cetartiodactyla, Bovidae)

Author keywords

Bovinae; Indels; Laurasiatheria; Mitochondrial introgression; Nuclear introns; Phylogeny; Taxonomy

Indexed keywords

MITOCHONDRIAL DNA; PRIMER DNA;

EID: 84873201889     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.11.003     Document Type: Article
Times cited : (72)

References (60)
  • 1
    • 48749115716 scopus 로고    scopus 로고
    • The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus
    • Alves P.C., Melo-Ferreira J., Freitas H., Boursot P. The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus. Philos. Trans. R. Soc. B 2008, 363:2831-2839.
    • (2008) Philos. Trans. R. Soc. B , vol.363 , pp. 2831-2839
    • Alves, P.C.1    Melo-Ferreira, J.2    Freitas, H.3    Boursot, P.4
  • 2
    • 34147191956 scopus 로고    scopus 로고
    • Origin, paleoecology, and paleobiogeography of early Bovini
    • Bibi F. Origin, paleoecology, and paleobiogeography of early Bovini. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2007, 248:60-72.
    • (2007) Palaeogeogr. Palaeoclimatol. Palaeoecol. , vol.248 , pp. 60-72
    • Bibi, F.1
  • 3
    • 84873190040 scopus 로고    scopus 로고
    • Evolution, Systematics, and Paleoecology of Bovinae (Mammalia: Artiodactyla) from the Late Miocene to the Recent. PhD Dissertation, Yale University.
    • Bibi, F., 2009. Evolution, Systematics, and Paleoecology of Bovinae (Mammalia: Artiodactyla) from the Late Miocene to the Recent. PhD Dissertation, Yale University.
    • (2009)
    • Bibi, F.1
  • 4
    • 0000863833 scopus 로고
    • Vergleichende Untersuchungen an Wildrindern (Tribus Bovini, Simpson 1945)
    • Bohlken H. Vergleichende Untersuchungen an Wildrindern (Tribus Bovini, Simpson 1945). Zool. Jahrb. Allg. Zool. 1958, 68:113-202.
    • (1958) Zool. Jahrb. Allg. Zool. , vol.68 , pp. 113-202
    • Bohlken, H.1
  • 5
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res 1999, 27:1767-1780.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 8
    • 79952447873 scopus 로고    scopus 로고
    • Bayesian analysis of hybridization and introgression between the endangered european mink (Mustela lutreola) and the polecat (Mustela putorius)
    • Cabria M.T., Michaux J.R., Gómez-Moliner B.J., Skumatov D., Maran T., Fournier P., de Luzuriaga J.L., Zardoya R. Bayesian analysis of hybridization and introgression between the endangered european mink (Mustela lutreola) and the polecat (Mustela putorius). Mol. Ecol. 2011, 20:1176-1190.
    • (2011) Mol. Ecol. , vol.20 , pp. 1176-1190
    • Cabria, M.T.1    Michaux, J.R.2    Gómez-Moliner, B.J.3    Skumatov, D.4    Maran, T.5    Fournier, P.6    de Luzuriaga, J.L.7    Zardoya, R.8
  • 10
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 12
    • 0034350320 scopus 로고    scopus 로고
    • Hidden morphological support for the phylogenetic placement of Pseudoryx nghetinhensis with bovine bovids: a combined analysis of gross anatomical evidence and DNA sequences from five genes
    • Gatesy J., Arctander P. Hidden morphological support for the phylogenetic placement of Pseudoryx nghetinhensis with bovine bovids: a combined analysis of gross anatomical evidence and DNA sequences from five genes. Syst. Biol. 2000, 49:515-538.
    • (2000) Syst. Biol. , vol.49 , pp. 515-538
    • Gatesy, J.1    Arctander, P.2
  • 13
    • 79955475613 scopus 로고    scopus 로고
    • Bovidae
    • University of California Press, Berkeley, L. Werdelin, W.J. Sanders (Eds.)
    • Gentry A.W. Bovidae. Cenozoic Mammals of Africa 2010, 741-796. University of California Press, Berkeley. L. Werdelin, W.J. Sanders (Eds.).
    • (2010) Cenozoic Mammals of Africa , pp. 741-796
    • Gentry, A.W.1
  • 14
    • 84987242095 scopus 로고
    • Phylogenetic analysis of the tribe Bovini (Mammalia, Artiodactyla)
    • Geraads D. Phylogenetic analysis of the tribe Bovini (Mammalia, Artiodactyla). Zool. J. Linn. Soc. - Lond. 1992, 104:193-207.
    • (1992) Zool. J. Linn. Soc. - Lond. , vol.104 , pp. 193-207
    • Geraads, D.1
  • 15
    • 0001297327 scopus 로고
    • Systematic relationships in the Bovini (Artiodactyla, Bovidae)
    • Groves C.P. Systematic relationships in the Bovini (Artiodactyla, Bovidae). Z. Zool. Syst. Evol. 1981, 19:264-278.
    • (1981) Z. Zool. Syst. Evol. , vol.19 , pp. 264-278
    • Groves, C.P.1
  • 16
    • 0033532249 scopus 로고    scopus 로고
    • Evolutionary affinities of the enigmatic saola (Pseudoryx nghetinhensis) in the context of the molecular phylogeny of Bovidae
    • Hassanin A., Douzery E.J. Evolutionary affinities of the enigmatic saola (Pseudoryx nghetinhensis) in the context of the molecular phylogeny of Bovidae. Proc. R. Soc. B - Biol. Sci. 1999, 266:893-900.
    • (1999) Proc. R. Soc. B - Biol. Sci. , vol.266 , pp. 893-900
    • Hassanin, A.1    Douzery, E.J.2
  • 17
    • 0033216761 scopus 로고    scopus 로고
    • The tribal radiation of the family Bovidae (Artiodactyla) and the evolution of the mitochondrial cytochrome b gene
    • Hassanin A., Douzery E.J. The tribal radiation of the family Bovidae (Artiodactyla) and the evolution of the mitochondrial cytochrome b gene. Mol. Phylogenet. Evol. 1999, 13:227-243.
    • (1999) Mol. Phylogenet. Evol. , vol.13 , pp. 227-243
    • Hassanin, A.1    Douzery, E.J.2
  • 18
    • 0037955994 scopus 로고    scopus 로고
    • Molecular and morphological phylogenies of Ruminantia and the alternative position of the Moschidae
    • Hassanin A., Douzery E.J. Molecular and morphological phylogenies of Ruminantia and the alternative position of the Moschidae. Syst. Biol. 2003, 52:206-228.
    • (2003) Syst. Biol. , vol.52 , pp. 206-228
    • Hassanin, A.1    Douzery, E.J.2
  • 19
    • 7444261950 scopus 로고    scopus 로고
    • Molecular phylogeny of the tribe Bovini (Bovidae, Bovinae) and the taxonomic status of the Kouprey, Bos sauveli Urbain 1937
    • Hassanin A., Ropiquet A. Molecular phylogeny of the tribe Bovini (Bovidae, Bovinae) and the taxonomic status of the Kouprey, Bos sauveli Urbain 1937. Mol. Phylogenet. Evol. 2004, 33:896-907.
    • (2004) Mol. Phylogenet. Evol. , vol.33 , pp. 896-907
    • Hassanin, A.1    Ropiquet, A.2
  • 20
    • 35848930399 scopus 로고    scopus 로고
    • Resolving a zoological mystery: the kouprey is a real species
    • Hassanin A., Ropiquet A. Resolving a zoological mystery: the kouprey is a real species. Proc. R. Soc. B - Biol. Sci. 2007, 274:2849-2855.
    • (2007) Proc. R. Soc. B - Biol. Sci. , vol.274 , pp. 2849-2855
    • Hassanin, A.1    Ropiquet, A.2
  • 22
    • 63349089935 scopus 로고    scopus 로고
    • Comparison of mid-Pliocene climate predictions produced by the HadAM3 and GCMAM3 General Circulation Models
    • Haywood A.M., Chandler M.A., Valdes P.J., Salzmann U., Lunt D.J., Dowsett H.J. Comparison of mid-Pliocene climate predictions produced by the HadAM3 and GCMAM3 General Circulation Models. Global Planet. Change 2009, 66:208-224.
    • (2009) Global Planet. Change , vol.66 , pp. 208-224
    • Haywood, A.M.1    Chandler, M.A.2    Valdes, P.J.3    Salzmann, U.4    Lunt, D.J.5    Dowsett, H.J.6
  • 23
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 24
    • 84873196969 scopus 로고    scopus 로고
    • IUCN, 2011. IUCN Red List of Threatened Species. Version 2011.2. (downloaded 24.04.12).
    • IUCN, 2011. IUCN Red List of Threatened Species. Version 2011.2. (downloaded 24.04.12). http://www.iucnredlist.org.
  • 25
    • 79960228494 scopus 로고    scopus 로고
    • Proamphibos kashmiricus (Bovini: Bovidae: Mammalia) lower case from the Pinjor formation of Pakistan
    • Khan M.A., Akhtar M. Proamphibos kashmiricus (Bovini: Bovidae: Mammalia) lower case from the Pinjor formation of Pakistan. Pak. J. Zool. 2011, 43:615-621.
    • (2011) Pak. J. Zool. , vol.43 , pp. 615-621
    • Khan, M.A.1    Akhtar, M.2
  • 26
    • 84555212681 scopus 로고    scopus 로고
    • Proamphibos (Bovini, Bovidae, Mammalia) from the Tatrot formation in the Upper Siwaliks of Pakistan
    • Khan M.A., Iqbal M., Ghaffar A., Akhtar M. Proamphibos (Bovini, Bovidae, Mammalia) from the Tatrot formation in the Upper Siwaliks of Pakistan. J. Anim. Plant Sci. 2009, 19:104-107.
    • (2009) J. Anim. Plant Sci. , vol.19 , pp. 104-107
    • Khan, M.A.1    Iqbal, M.2    Ghaffar, A.3    Akhtar, M.4
  • 30
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N., Lepage T., Blanquart S. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009, 25:2286-2288.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 31
    • 74849089663 scopus 로고    scopus 로고
    • Bos grunniens and Bos mutus (Artiodactyla: Bovidae)
    • Leslie D.M., Schaller G.B. Bos grunniens and Bos mutus (Artiodactyla: Bovidae). Mamm. Species 2009, 836:1-17.
    • (2009) Mamm. Species , vol.836 , pp. 1-17
    • Leslie, D.M.1    Schaller, G.B.2
  • 32
    • 65649140354 scopus 로고    scopus 로고
    • Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)
    • MacEachern S., McEwan J., Goddard M. Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae). BMC Genomics 2009, 10:177.
    • (2009) BMC Genomics , vol.10 , pp. 177
    • MacEachern, S.1    McEwan, J.2    Goddard, M.3
  • 34
    • 81255168024 scopus 로고    scopus 로고
    • Presence of the Asian origin Bovini, Hemibos sp. aff. Hemibos gracilis and Bison sp., at the early Pleistocene site of Venta Micena (Orce, Spain)
    • Martinez-Navarro B., Ros-Montoya S., Patrocinio E.M., Palmqvist P. Presence of the Asian origin Bovini, Hemibos sp. aff. Hemibos gracilis and Bison sp., at the early Pleistocene site of Venta Micena (Orce, Spain). Quatern. Int. 2011, 243:54-60.
    • (2011) Quatern. Int. , vol.243 , pp. 54-60
    • Martinez-Navarro, B.1    Ros-Montoya, S.2    Patrocinio, E.M.3    Palmqvist, P.4
  • 37
    • 79960845140 scopus 로고    scopus 로고
    • DNA barcoding of African fruit bats (Mammalia, Pteropodidae). The mitochondrial genome does not provide a reliable discrimination between Epomophorus gambianus and Micropteropus pusillus
    • Nesi N., Nakouné E., Cruaud C., Hassanin A. DNA barcoding of African fruit bats (Mammalia, Pteropodidae). The mitochondrial genome does not provide a reliable discrimination between Epomophorus gambianus and Micropteropus pusillus. C. R. Biol. 2011, 334:544-554.
    • (2011) C. R. Biol. , vol.334 , pp. 544-554
    • Nesi, N.1    Nakouné, E.2    Cruaud, C.3    Hassanin, A.4
  • 39
    • 0040953620 scopus 로고
    • Fossil ancestry of the yak, its cultural significance, and domestication in Tibet
    • Olsen S.J. Fossil ancestry of the yak, its cultural significance, and domestication in Tibet. Proc. Acad. Natl. Sci. Phila. 1990, 142:73-100.
    • (1990) Proc. Acad. Natl. Sci. Phila. , vol.142 , pp. 73-100
    • Olsen, S.J.1
  • 40
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 41
    • 84859712982 scopus 로고    scopus 로고
    • Global vegetation dynamics and latitudinal temperature gradients during the Mid to Late Miocene (15.97-5.33Ma)
    • Pound M.J., Haywood A.M., Salzmann U., Riding J.B. Global vegetation dynamics and latitudinal temperature gradients during the Mid to Late Miocene (15.97-5.33Ma). Earth-Sci. Rev. 2012, 112:1-22.
    • (2012) Earth-Sci. Rev. , vol.112 , pp. 1-22
    • Pound, M.J.1    Haywood, A.M.2    Salzmann, U.3    Riding, J.B.4
  • 46
    • 19444366302 scopus 로고    scopus 로고
    • Molecular evidence for the polyphyly of the genus Hemitragus (Mammalia, Bovidae)
    • Ropiquet A., Hassanin A. Molecular evidence for the polyphyly of the genus Hemitragus (Mammalia, Bovidae). Mol. Phylogenet. Evol. 2005, 36:154-168.
    • (2005) Mol. Phylogenet. Evol. , vol.36 , pp. 154-168
    • Ropiquet, A.1    Hassanin, A.2
  • 47
    • 13844307113 scopus 로고    scopus 로고
    • Molecular phylogeny of Caprines (Bovidae, Antilopinae): the question of their origin and diversification during the Miocene
    • Ropiquet A., Hassanin A. Molecular phylogeny of Caprines (Bovidae, Antilopinae): the question of their origin and diversification during the Miocene. J. Zool. Syst. Evol. Res. 2005, 43:49-60.
    • (2005) J. Zool. Syst. Evol. Res. , vol.43 , pp. 49-60
    • Ropiquet, A.1    Hassanin, A.2
  • 48
    • 33748898320 scopus 로고    scopus 로고
    • Hybrid origin of the Pliocene ancestor of wild goats
    • Ropiquet A., Hassanin A. Hybrid origin of the Pliocene ancestor of wild goats. Mol. Phylogenet. Evol. 2006, 41:395-404.
    • (2006) Mol. Phylogenet. Evol. , vol.41 , pp. 395-404
    • Ropiquet, A.1    Hassanin, A.2
  • 49
    • 69949086572 scopus 로고    scopus 로고
    • SuperTRI: a new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences
    • Ropiquet A., Li B., Hassanin A. SuperTRI: a new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences. C. R. Biol. 2009, 332:832-847.
    • (2009) C. R. Biol. , vol.332 , pp. 832-847
    • Ropiquet, A.1    Li, B.2    Hassanin, A.3
  • 50
    • 33749162691 scopus 로고    scopus 로고
    • Metazoan OXPHOS gene families: evolutionary forces at the level of mitochondrial and nuclear genomes
    • Saccone C., Lanave C., De Grassi A. Metazoan OXPHOS gene families: evolutionary forces at the level of mitochondrial and nuclear genomes. Biochim. Biophys. Acta 2006, 1757:1171-1178.
    • (2006) Biochim. Biophys. Acta , vol.1757 , pp. 1171-1178
    • Saccone, C.1    Lanave, C.2    De Grassi, A.3
  • 52
    • 77950521096 scopus 로고    scopus 로고
    • Extinctions, scenarios, and assumptions: changes in latest Pleistocene large herbivore abundance and distribution in western North America
    • Scott E. Extinctions, scenarios, and assumptions: changes in latest Pleistocene large herbivore abundance and distribution in western North America. Quatern. Int. 2010, 217:225-239.
    • (2010) Quatern. Int. , vol.217 , pp. 225-239
    • Scott, E.1
  • 55
    • 84873133870 scopus 로고    scopus 로고
    • PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0b. Sinauer Associates, Sunderland, MA.
    • Swofford, D.L., 2003 PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0b. Sinauer Associates, Sunderland, MA.
    • (2003)
    • Swofford, D.L.1
  • 56
    • 19444387487 scopus 로고    scopus 로고
    • X-chromosomal window into the evolutionary history of the guenons (Primates: Cercopithecini)
    • Tosi A.J., Detwiler K.M., Disotell T.R. X-chromosomal window into the evolutionary history of the guenons (Primates: Cercopithecini). Mol. Phylogenet. Evol. 2005, 36:58-66.
    • (2005) Mol. Phylogenet. Evol. , vol.36 , pp. 58-66
    • Tosi, A.J.1    Detwiler, K.M.2    Disotell, T.R.3
  • 57
    • 0040405697 scopus 로고
    • Mammalian hybrids and generic limits
    • Van Gelder R.G. Mammalian hybrids and generic limits. Am. Mus. Novit. 1977, 2635:1-25.
    • (1977) Am. Mus. Novit. , vol.2635 , pp. 1-25
    • Van Gelder, R.G.1
  • 58
    • 3042555003 scopus 로고    scopus 로고
    • Maternal and paternal lineages in cross-breeding bovine species. Has wisent a hybrid origin?
    • Verkaar E.L., Nijman I.J., Beeke M., Hanekamp E., Lenstra J.A. Maternal and paternal lineages in cross-breeding bovine species. Has wisent a hybrid origin?. Mol. Biol. Evol. 2004, 21:1165-1170.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1165-1170
    • Verkaar, E.L.1    Nijman, I.J.2    Beeke, M.3    Hanekamp, E.4    Lenstra, J.A.5
  • 60
    • 28944451210 scopus 로고    scopus 로고
    • Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
    • Yang Z., Rannala B. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds. Mol. Biol. Evol. 2006, 23:212-226.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 212-226
    • Yang, Z.1    Rannala, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.