-
1
-
-
39449123232
-
Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP
-
Takizawa T, Gudla PR, Guo LY, Lockett S, Misteli T, (2008) Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP. Genes & Development 22: 489-498.
-
(2008)
Genes & Development
, vol.22
, pp. 489-498
-
-
Takizawa, T.1
Gudla, P.R.2
Guo, L.Y.3
Lockett, S.4
Misteli, T.5
-
2
-
-
34249307315
-
Nuclear organization of the genome and the potential for gene regulation
-
Fraser P, Bickmore W, (2007) Nuclear organization of the genome and the potential for gene regulation. Nature 447: 413-417.
-
(2007)
Nature
, vol.447
, pp. 413-417
-
-
Fraser, P.1
Bickmore, W.2
-
3
-
-
70349873824
-
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, et al. (2009) Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome. Science 326: 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
-
4
-
-
58549091848
-
Eukaryotic gene regulation in three dimensions and its impact on genome evolution
-
Babu MM, Janga SC, de Santiago I, Pombo A, (2008) Eukaryotic gene regulation in three dimensions and its impact on genome evolution. Current Opinion in Genetics & Development 18: 571-582.
-
(2008)
Current Opinion in Genetics & Development
, vol.18
, pp. 571-582
-
-
Babu, M.M.1
Janga, S.C.2
de Santiago, I.3
Pombo, A.4
-
5
-
-
5444260778
-
Spatial positioning: A new dimension in genome function
-
Misteli T, (2004) Spatial positioning: A new dimension in genome function. Cell 119: 153-156.
-
(2004)
Cell
, vol.119
, pp. 153-156
-
-
Misteli, T.1
-
6
-
-
33846535507
-
Cell biology - Chromosome territories
-
Meaburn KJ, Misteli T, (2007) Cell biology- Chromosome territories. Nature 445: 379-381.
-
(2007)
Nature
, vol.445
, pp. 379-381
-
-
Meaburn, K.J.1
Misteli, T.2
-
7
-
-
70149094741
-
Global identification of yeast chromosome interactions using Genome conformation capture
-
Rodley CDM, Bertels F, Jones B, O'Sullivan JM, (2009) Global identification of yeast chromosome interactions using Genome conformation capture. Fungal Genetics and Biology 46: 879-886.
-
(2009)
Fungal Genetics and Biology
, vol.46
, pp. 879-886
-
-
Rodley, C.D.M.1
Bertels, F.2
Jones, B.3
O'Sullivan, J.M.4
-
8
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker J, Rippe K, Dekker M, Kleckner N, (2002) Capturing chromosome conformation. Science 295: 1306-1311.
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
9
-
-
0034041633
-
Centromere clustering is a major determinant of yeast interphase nuclear organization
-
Jin QW, Fuchs J, Loidl J, (2000) Centromere clustering is a major determinant of yeast interphase nuclear organization. Journal of Cell Science 113: 1903-1912.
-
(2000)
Journal of Cell Science
, vol.113
, pp. 1903-1912
-
-
Jin, Q.W.1
Fuchs, J.2
Loidl, J.3
-
10
-
-
13444257509
-
Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization
-
Bystricky K, Laroche T, van Houwe G, Blaszczyk M, Gasser SM, (2005) Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization. Journal of Cell Biology 168: 375-387.
-
(2005)
Journal of Cell Biology
, vol.168
, pp. 375-387
-
-
Bystricky, K.1
Laroche, T.2
van Houwe, G.3
Blaszczyk, M.4
Gasser, S.M.5
-
11
-
-
0029820640
-
The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae
-
Gotta M, Laroche T, Formenton A, Maillet L, Scherthan H, et al. (1996) The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae. Journal of Cell Biology 134: 1349-1363.
-
(1996)
Journal of Cell Biology
, vol.134
, pp. 1349-1363
-
-
Gotta, M.1
Laroche, T.2
Formenton, A.3
Maillet, L.4
Scherthan, H.5
-
12
-
-
0032490917
-
Perinuclear localization of chromatin facilitates transcriptional silencing
-
Andrulis ED, Neiman AM, Zappulla DC, Sternglanz R, (1998) Perinuclear localization of chromatin facilitates transcriptional silencing. Nature 394: 592-595.
-
(1998)
Nature
, vol.394
, pp. 592-595
-
-
Andrulis, E.D.1
Neiman, A.M.2
Zappulla, D.C.3
Sternglanz, R.4
-
13
-
-
63849287611
-
The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion
-
Taddei A, Van Houwe G, Nagai S, Erb I, van Nimwegen E, et al. (2009) The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion. Genome Research 19: 611-625.
-
(2009)
Genome Research
, vol.19
, pp. 611-625
-
-
Taddei, A.1
Van Houwe, G.2
Nagai, S.3
Erb, I.4
van Nimwegen, E.5
-
16
-
-
79952403632
-
Principles of chromosomal organization: lessons from yeast
-
Zimmer C, Fabre E, (2011) Principles of chromosomal organization: lessons from yeast. Journal of Cell Biology 192: 723-733.
-
(2011)
Journal of Cell Biology
, vol.192
, pp. 723-733
-
-
Zimmer, C.1
Fabre, E.2
-
17
-
-
77955160803
-
Genome Organization and Function: A View from Yeast and Arabidopsis
-
Saez-Vasquez J, Gadal O, (2010) Genome Organization and Function: A View from Yeast and Arabidopsis. Molecular Plant 3: 678-690.
-
(2010)
Molecular Plant
, vol.3
, pp. 678-690
-
-
Saez-Vasquez, J.1
Gadal, O.2
-
18
-
-
77954817153
-
Yeast chromosomal interactions and nuclear architecture
-
O'Sullivan JM, (2010) Yeast chromosomal interactions and nuclear architecture. Current Opinion in Cell Biology 22: 298-304.
-
(2010)
Current Opinion in Cell Biology
, vol.22
, pp. 298-304
-
-
O'Sullivan, J.M.1
-
20
-
-
0034611627
-
MAP kinase signaling induces nuclear reorganization in budding yeast
-
Stone EM, Heun P, Laroche T, Pillus L, Gasser SM, (2000) MAP kinase signaling induces nuclear reorganization in budding yeast. Current Biology 10: 373-382.
-
(2000)
Current Biology
, vol.10
, pp. 373-382
-
-
Stone, E.M.1
Heun, P.2
Laroche, T.3
Pillus, L.4
Gasser, S.M.5
-
21
-
-
2342501365
-
Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
-
Casolari JM, Brown CR, Komili S, West J, Hieronymus H, et al. (2004) Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization. Cell 117: 427-439.
-
(2004)
Cell
, vol.117
, pp. 427-439
-
-
Casolari, J.M.1
Brown, C.R.2
Komili, S.3
West, J.4
Hieronymus, H.5
-
22
-
-
85052275006
-
Chromosome positioning and the clustering of functionally related loci in yeast is driven by chromosomal interactions
-
Gehlen LR, Gruenert G, Jones MB, Rodley CD, Langowski J, et al. (2012) Chromosome positioning and the clustering of functionally related loci in yeast is driven by chromosomal interactions. Nucleus 3: 15.
-
(2012)
Nucleus
, vol.3
, pp. 15
-
-
Gehlen, L.R.1
Gruenert, G.2
Jones, M.B.3
Rodley, C.D.4
Langowski, J.5
-
24
-
-
57049179496
-
High-resolution statistical mapping reveals gene territories in live yeast
-
Berger AB, Cabal GG, Fabre E, Duong T, Buc H, et al. (2008) High-resolution statistical mapping reveals gene territories in live yeast. Nature Methods 5: 1031-1037.
-
(2008)
Nature Methods
, vol.5
, pp. 1031-1037
-
-
Berger, A.B.1
Cabal, G.G.2
Fabre, E.3
Duong, T.4
Buc, H.5
-
25
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, et al. (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nature Genetics 38: 1348-1354.
-
(2006)
Nature Genetics
, vol.38
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
-
26
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions
-
Zhao Z, Tavoosidana G, Sjolinder M, Gondor A, Mariano P, et al. (2006) Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nature Genetics 38: 1341-1347.
-
(2006)
Nature Genetics
, vol.38
, pp. 1341-1347
-
-
Zhao, Z.1
Tavoosidana, G.2
Sjolinder, M.3
Gondor, A.4
Mariano, P.5
-
27
-
-
31344477982
-
The three 'C's of chromosome conformation capture: controls, controls, controls
-
Dekker J, (2006) The three 'C's of chromosome conformation capture: controls, controls, controls. Nature Methods 3: 17-21.
-
(2006)
Nature Methods
, vol.3
, pp. 17-21
-
-
Dekker, J.1
-
28
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
Duan Z, Andronescu M, Schutz K, McIlwain S, Kim YJ, et al. (2010) A three-dimensional model of the yeast genome. Nature 465: 363-367.
-
(2010)
Nature
, vol.465
, pp. 363-367
-
-
Duan, Z.1
Andronescu, M.2
Schutz, K.3
McIlwain, S.4
Kim, Y.J.5
-
29
-
-
78650458168
-
Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
-
Tanizawa H, Iwasaki O, Tanaka A, Capizzi JR, Wickramasinghe P, et al. (2010) Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation. Nucleic Acids Research 38: 8164-8177.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 8164-8177
-
-
Tanizawa, H.1
Iwasaki, O.2
Tanaka, A.3
Capizzi, J.R.4
Wickramasinghe, P.5
-
30
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene Ontology: tool for the unification of biology. Nature Genetics 25: 25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
31
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Molecular Biology of the Cell 9: 3273-3297.
-
(1998)
Molecular Biology of the Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
-
32
-
-
36749097895
-
High-resolution timing of cell cycle-regulated gene expression
-
Rowicka M, Kudlicki A, Tu BP, Otwinowski Z, (2007) High-resolution timing of cell cycle-regulated gene expression. Proceedings of the National Academy of Sciences of the United States of America 104: 16892-16897.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 16892-16897
-
-
Rowicka, M.1
Kudlicki, A.2
Tu, B.P.3
Otwinowski, Z.4
-
33
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, et al. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Molecular Biology of the Cell 11: 4241-4257.
-
(2000)
Molecular Biology of the Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
-
34
-
-
84867842663
-
A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus
-
Wong H, Marie-Nelly H, Herbert S, Carrivain P, Blanc H, et al. (2012) A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus. Curr Biol 22: 1881-1890.
-
(2012)
Curr Biol
, vol.22
, pp. 1881-1890
-
-
Wong, H.1
Marie-Nelly, H.2
Herbert, S.3
Carrivain, P.4
Blanc, H.5
-
35
-
-
84863540362
-
Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
-
Tjong H, Gong K, Chen L, Alber F, (2012) Physical tethering and volume exclusion determine higher-order genome organization in budding yeast. Genome Research 22: 1295-1305.
-
(2012)
Genome Research
, vol.22
, pp. 1295-1305
-
-
Tjong, H.1
Gong, K.2
Chen, L.3
Alber, F.4
-
36
-
-
84856724800
-
Dynamical modeling of three-dimensional genome organization in interphase budding yeast (vol 102, pg 296, 2012)
-
Tokuda N, Terada TR, Sasai M, (2012) Dynamical modeling of three-dimensional genome organization in interphase budding yeast (vol 102, pg 296, 2012). Biophysical Journal 102: 719-719.
-
(2012)
Biophysical Journal
, vol.102
, pp. 719
-
-
Tokuda, N.1
Terada, T.R.2
Sasai, M.3
-
37
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe KH, Shields DC, (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.
-
(1997)
Nature
, vol.387
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
38
-
-
34247847827
-
Functional analysis of gene duplications in Saccharomyces cerevisiae
-
Guan YF, Dunham MJ, Troyanskaya OG, (2007) Functional analysis of gene duplications in Saccharomyces cerevisiae. Genetics 175: 933-943.
-
(2007)
Genetics
, vol.175
, pp. 933-943
-
-
Guan, Y.F.1
Dunham, M.J.2
Troyanskaya, O.G.3
-
39
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, et al. (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nature Genetics 36: 1065-1071.
-
(2004)
Nature Genetics
, vol.36
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
-
40
-
-
8544273658
-
The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI
-
Bussey H, Storms RK, Ahmed A, Albermann K, Allen E, et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature 387: 103-105.
-
(1997)
Nature
, vol.387
, pp. 103-105
-
-
Bussey, H.1
Storms, R.K.2
Ahmed, A.3
Albermann, K.4
Allen, E.5
-
41
-
-
80054984337
-
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
-
Yaffe E, Tanay A, (2011) Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nature Genetics 43: 1059-U1040.
-
(2011)
Nature Genetics
, vol.43
, pp. 1040-1059
-
-
Yaffe, E.1
Tanay, A.2
-
42
-
-
84866997011
-
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
-
Imakaev M, Fudenberg G, McCord RP, Naumova N, Goloborodko A, et al. (2012) Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nat Methods 9: 999-1003.
-
(2012)
Nat Methods
, vol.9
, pp. 999-1003
-
-
Imakaev, M.1
Fudenberg, G.2
McCord, R.P.3
Naumova, N.4
Goloborodko, A.5
-
43
-
-
84865483795
-
Normalization of a chromosomal contact map
-
Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J, (2012) Normalization of a chromosomal contact map. BMC Genomics 13: 436.
-
(2012)
BMC Genomics
, vol.13
, pp. 436
-
-
Cournac, A.1
Marie-Nelly, H.2
Marbouty, M.3
Koszul, R.4
Mozziconacci, J.5
-
44
-
-
84862917808
-
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
-
Kalhor R, Tjong H, Jayathilaka N, Alber F, Chen L, (2012) Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nature Biotechnology 30: 90-U139.
-
(2012)
Nature Biotechnology
, vol.30
, pp. 90-139
-
-
Kalhor, R.1
Tjong, H.2
Jayathilaka, N.3
Alber, F.4
Chen, L.5
-
45
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. NUCLEIC ACIDS RESEARCH 30: 207-210.
-
(2002)
NUCLEIC ACIDS RESEARCH
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
|