Circadian methane oxidation in the root zone of rice plants

Biogeochemistry

Volumn 111, Issue 1-3, 2012, Pages 317-330

  Cho, R ^a   Schroth, M H ^a   Zeyer, J ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Circadian variation; In situ quantification; Methane oxidation; Oxygen; Paddy soil; Push pull test

Indexed keywords

CONCENTRATION (COMPOSITION); EXTRACTION METHOD; METHANE; METHANOGENIC BACTERIUM; OXIDATION; PADDY FIELD; PHOTOSYNTHESIS; PLANT COMMUNITY; RHIZOSPHERE; RICE; SATURATION; TRACER;

BACTERIA (MICROORGANISMS);

EID: 84873154246     PISSN: 01682563     EISSN: 1573515X     Source Type: Journal    
DOI: 10.1007/s10533-011-9651-6     Document Type: Article

References (67)

1. Armstrong W (1964) Oxygen diffusion from the roots of some british bog plants. Nature 204(4960): 801-802.
2. Bassein E, Jaffe PR (2009) Measuring in situ reaction rate constants in wetland sediments. Environ Monit and Assess 159(1-4): 51-62.
3. Bosse U, Frenzel P (1997) Activity and distribution of methane-oxidizing bacteria in flooded rice soil microcosms and in rice plants (oryza sativa). Appl Environ Microbiol 63(4): 1199-1207.
4. Butterbach-Bahl K, Papen H, Rennenberg H (1997) Impact of gas transport through rice cultivars on methane emission from rice paddy fields. Plant Cell Environ 20(9): 1175-1183.
5. Calhoun A, King GM (1997) Regulation of root-associated methanotrophy by oxygen availability in the rhizosphere of two aquatic macrophytes. Appl Environ Microbiol 63(8): 3051-3058.
6. 2 exchange. Global Biogeochem Cycles 11(1): 15-27.
7. Chen CC, Dixon JB, Turner FT (1980) Iron coatings on rice roots-mineralogy and quantity influencing factors. Soil Sci Soc Am J 44(3): 635-639.
8. Christensen PB, Revsbech NP, Sand-Jensen K (1994) Microsensor analysis of oxygen in the rhizosphere of the aquatic macrophyte Littorella uniflora (L.) ascherson. Plant Physiol 105(3): 847-852.
9. Colmer TD (2003) Long-distance transport of gases in plants: a perspective on internal aeration and radial oxygen loss from roots. Plant Cell Environ 26(1): 17-36.
10. Colmer TD, Pedersen O (2008) Oxygen dynamics in submerged rice (Oryza sativa). New Phytol 178(2): 326-334.
11. Colmer TD, Gibberd MR, Wiengweera A, Tinh TK (1998) The barrier to radial oxygen loss from roots of rice (Oryza sativa L.) is induced by growth in stagnant solution. J Exp Bot 49(325): 1431-1436.
12. Conrad R, Rothfuss F (1991) Methane oxidation in the soil surface layer of a flooded rice field and the effect of ammonium. Biol Fertil Soils 12(1): 28-32.
13. Denman KL, Brasseur G, Chidthaisong A, Ciais P, Cox PM, Dickinson RE, Hauglustaine D, Heinze C, Holland E, Jacob D, Lohmann U, Ramachandran S, da Silva Dias PL, Wofsy SC, Zhang X (2007) Couplings between changes in the climate system and biogeochemistry. In: Solomon S, D. Qin, M. Manning, Z. Chen, M. Marquis, K. B. Averyt, M. Tignor and H. L. Miller (eds) Climate change 2007: The physical science basis. Contribution of working group I to the fourth assessment report of the Intergovernmental Panel on Climate Change.
14. Eller G, Frenzel P (2001) Changes in activity and community structure of methane-oxidizing bacteria over the growth period of rice. Appl Environ Microbiol 67(6): 2395-2403.
15. Eller G, Kruger M, Frenzel P (2005) Comparing field and microcosm experiments: a case study on methano- and methylo-trophic bacteria in paddy soil. FEMS Microbiol Ecol 51(2): 279-291.
16. Epp MA, Chanton JP (1993) Rhizospheric methane oxidation determined via the methyl fluoride inhibition technique. J Geophys Res Atm 98(D10): 18413-18422.
17. Ferrell RT, Himmelblau DM (1967) Diffusion coefficients of nitrogen and oxygen in water. J Chem Eng Data 12(1): 111-115.
18. Forster P, Ramaswamy V, Artaxo P, Berntsen T, Betts R, Fahey DW, Haywood J, Lean J, Lowe DC, Myhre G, Nganga J, Prinn R, Raga G, Schulz M, van Dorland R (2007) Changes in atmospheric constituents and in radiative forcing. In: Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL (edS) Climate change 2007: the physical science basis. Contribution of working group I to the fourth assessment report of the Intergovernmental Panel on Climate Change.
19. Frenzel P, Rothfuss F, Conrad R (1992) Oxygen profiles and methane turnover in a flooded rice microcosm. Biol Fertil Soils 14(2): 84-89.
20. Fuller EN, Schettle Pd, Giddings JC (1966) A new method for prediction of binary gas-phase diffusion coefficients. Ind Eng Chem 58(5): 19-27.
21. Gerard G, Chanton J (1993) Quantification of methane oxidation in the rhizosphere of emergent aquatic macrophytes-defining upper limits. Biogeochemistry 23(2): 79-97.
22. Gilbert B, Frenzel P (1995) Methanotrophic bacteria in the rhizosphere of rice microcosms and their effect on porewater methane concentration and methane emission. Biol Fertil Soils 20(2): 93-100.
23. 4 oxidation: the activity of bacteria, their distribution and the microenvironment. Soil Biol Biochem 30(14): 1903-1916.
24. Gomez KE, Gonzalez-Gil G, Lazzaro A, Schroth MH (2009) Quantifying methane oxidation in a landfill-cover soil by gas push-pull tests. Waste Manag 29(9): 2518-2526.
25. Gonzalez-Gil G, Schroth MH, Zeyer J (2007) Transport of methane and noble gases during gas push-pull tests in dry porous media. Environ Sci Technol 41(9): 3262-3268.
26. 13c-labelled methane. Biogeochemistry 64(3): 355-372.
27. Hageman KJ, Field JA, Istok JD, Semprini L (2004) Quantifying the effects of fumarate on in situ reductive dechlorination rates. J Contam Hydrol 75(3-4): 281-296.
28. Haggerty R, Schroth MH, Istok JD (1998) Simplified method of "push-pull" test data analysis for determining in situ reaction rate coefficients. Ground Water 36(2): 314-324.
29. Hanson RS, Hanson TE (1996) Methanotrophic bacteria. Microbiol Rev 60(2): 439-471.
30. 4 on presence and activity of the indigenous methanotrophic community in rice field soil. Environ Microbiol 2(6): 666-679.
31. Holzapfel-Pschorn A, Seiler W (1986) Methane emission during a cultivation period from an Italian rice paddy. J Geophys Res 91(D11): 11803-11814.
32. Holzapfel-Pschorn A, Conrad R, Seiler W (1985) Production, oxidation and emission of methane in rice paddies. FEMS Microbiol Lett 31(6): 343-351.
33. Istok JD, Humphrey MD, Schroth MH, Hyman MR, Oreilly KT (1997) Single-well, "push-pull"' test for in situ determination of microbial activities. Ground Water 35(4): 619-631.
34. Kampbell DH, Vandegrift SA (1998) Analysis of dissolved methane, ethane, and ethylene in ground water by a standard gas chromatographic technique. J Chromatogr Sci 36(5): 253-256.
35. Kim Y, Istok JD, Semprini L (2006) Push-pull tests evaluating in situ aerobic cometabolism of ethylene, propylene, and cis-1, 2-dichloroethylene. J Contam Hydrol 82(1-2): 165-181.
36. King G (1996) In situ analyses of methane oxidation associated with the roots and rhizomes of a bur reed, Sparganium eurycarpum, in a maine wetland. Appl Environ Microbiol 62(12): 4548-4555.
37. Kleikemper J, Schroth MH, Sigler WV, Schmucki M, Bernasconi SM, Zeyer J (2002) Activity and diversity of sulfate-reducing bacteria in a petroleum hydrocarbon-contaminated aquifer. Appl Environ Microbiol 68(4): 1516-1523.
38. Koop-Jakobsen K, Giblin AE (2009) New approach for measuring denitrification in the rhizosphere of vegetated marsh sediments. Limnol Oceanogr Methods 7: 626-637.
39. Krüger M, Frenzel P, Conrad R (2001) Microbial processes influencing methane emission from rice fields. Glob Change Biol 7(1): 49-63.
40. 4 oxidation in rice fields determined by stable carbon isotopes and specific inhibitors. Glob Change Biol 8(3): 265-280.
41. Kumaraswamy S, Rath AK, Ramakrishnan B, Sethunathan N (2000) Wetland rice soils as sources and sinks of methane: a review and prospects for research. Biol Fertil Soils 31(6): 449-461.
42. Liesack W, Schnell S, Revsbech NP (2000) Microbiology of flooded rice paddies. FEMS Microbiol Rev 24(5): 625-645.
43. Lobo VMM, Ribeiro ACF, Verissimo LMP (1998) Diffusion coefficients in aqueous solutions of potassium chloride at high and low concentrations. J Mol Liq 78(1-2): 139-149.
44. Macfie SM, Crowder AA (1987) Soil factors influencing ferric hydroxide plaque-formation on roots of Typha latifolia L. Plant Soil 102(2): 177-184.
45. -2 near STP. Atmos Environ 32(6): 1111-1127.
46. Nauer PA, Schroth MH (2010) In situ quantification of atmospheric methane oxidation in near-surface soils. Vadose Zone J 9(4): 1052-1062.
47. Nouchi I, Mariko S, Aoki K (1990) Mechanism of methane transport from the rhizosphere to the atmosphere through rice plants. Plant Physiol 94(1): 59-66.
48. 4 in rhizosphere of Thalassia testudinum. Limnol Oceanogr 22(3): 566-570.
49. Rao DK, Bhattacharya SK, Jani RA (2008) Seasonal variations of carbon isotopic composition of methane from Indian paddy fields. Glob Biogeochem Cycles 22(1): GB1004.
50. Revsbech NP, Pedersen O, Reichardt W, Briones A (1999) Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions. Biol Fertil Soils 29(4): 379-385.
51. Sander R (1999) Compilation of Henry's law constants for inorganic and organic species of potential importance in environmental chemistry (version 3) http://www. Henrys-law. org.
52. 3 isotope pairing technique to measure denitrification in sediments at the surface water-groundwater interface. Limnol Oceanogr Methods 4: 142-152.
53. Schroth MH, Istok JD (2006) Models to determine first-order rate coefficients from single-well push-pull tests. Ground Water 44(2): 275-283.
54. Schütz H, Seiler W, Conrad R (1989) Processes involved in formation and emission of methane in rice paddies. Biogeochemistry 7(1): 33-53.
55. Seiler W, Holzapfel-Pschorn A, Conrad R, Scharffe D (1983) Methane emission from rice paddies. J Atmos Chem 1(3): 241-268.
56. Urmann K, Gonzalez-Gil G, Schroth MH, Hofer M, Zeyer J (2005) New field method: gas push-pull tests for the in situ quantification of microbial activities in the vadose zone. Environ Sci Technol 39(1): 304-310.
57. van Bodegom P, Stams F, Mollema L, Boeke S, Leffelaar P (2001) Methane oxidation and the competition for oxygen in the rice rhizosphere. Appl Environ Microbiol 67(8): 3586-3597.
58. van der Gon HACD, Neue H-U (1996) Oxidation of methane in the rhizosphere of rice plants. Biol Fertil Soils 22(4): 359-366.
59. van der Gon HACD, van Breemen N (1993) Diffusion-controlled transport of methane from soil to atmosphere as mediated by rice plants. Biogeochemistry 21(3): 177-190.
60. van der Nat F-FWA, Middelburg JJ, van Meteren D, Wielemakers A (1998) Diel methane emission patterns from Scirpus lacustris and Phragmites australis. Biogeochemistry 41(1): 1-22.
61. Wang ZP, Zeng D, Patrick WH (1997) Characteristics of methane oxidation in a flooded rice soil profile. Nutr Cycl Agroecosyst 49(1): 97-103.
62. Wassmann R, Papen H, Rennenberg H (1993) Methane emission from rice paddies and possible mitigation strategies. Chemosphere 26(1-4): 201-217.
63. Waters I, Armstrong W, Thompson CJ, Setter TL, Adkins S, Gibbs J, Greenway H (1989) Diurnal changes in radial oxygen loss and ethanol-metabolism in roots of submerged and non-submerged rice seedlings. New Phytol 113(4): 439-451.
64. Witherspoon P, Saraf DN (1965) Diffusion of methane, ethane, propane and n-butane in water from 25 to 43 degrees. J Phys Chem 69(11): 3752-3755.
65. Yagi K, Tsuruta H, Minami K (1997) Possible options for mitigating methane emission from rice cultivation. Nutr Cycl Agroecosyst 49(1): 213-220.
66. Yaws CL (2010) Yaws' transport properties of chemicals and hydrocarbons (electronic edition). Knovel, Norwich. http://knovel. com/web/portal/browse/display?_EXT_KNOVEL_DISPLAY_bookid=2905&VerticalID=0.
67. Yoshinari T, Knowles R (1976) Acetylene inhibition of nitrous oxide reduction by denitrifying bacteria. Biochem Biophys Res Commun 69(3): 705-710.