FR-H3: A new QTL to assist in the development of fall-sown barley with superior low temperature tolerance

Theoretical and Applied Genetics

Volumn 126, Issue 2, 2013, Pages 335-347

  Fisk, Scott P ^a   Cuesta Marcos, Alfonso ^a   Cistué, Luis ^b   Russell, Joanne ^c   Smith, Kevin P ^d   Baenziger, Stephen ^e   Bedo, Zoltán ^f   Corey, Ann ^a   Filichkin, Tanya ^a   Karsai, Ildikó ^f   Waugh, Robbie ^c   Hayes, Patrick M ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b CSIC   (Spain)

^c SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^d UNIVERSITY OF MINNESOTA   (United States)

^e UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^f AGRICULTURAL INSTITUTE   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

CLIMATE CHANGE; GENES; OLIGONUCLEOTIDES; WATER RESOURCES;

DOUBLED HAPLOID; EFFICIENT USE OF WATER; LOW TEMPERATURE TOLERANCE; LOW TEMPERATURES; MAPPING POPULATIONS; OREGON STATE UNIVERSITY; PHENOTYPIC VARIATIONS; UNIVERSITY OF NEBRASKA;

TEMPERATURE;

HORDEUM;

EID: 84873094814     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-1982-8     Document Type: Article

References (40)

1. Baga M, Fowler DB, Chibbar RN (2009) Identification of genomic regions determining the phenological development leading to floral transition in wheat (Triticum aestivum L.). J Exp Bot 60: 3575-3585.
2. Casas AM, Djemel A, Ciudad FJ, Yahiaoui S, Ponce LJ, Contreras-Moreira B, Pilar Gracia M, Lasa JM, Igartua E (2011) HvFT1 (VrnH3) drives latitudinal adaptation in Spanish barleys. Theor Appl Genet 122: 1293-1304.
3. Cistué L, Vallés MP, Echávarri B, Sanz JM, Castillo AM (2003) Barley anther culture. In: Maluszynski M, Kasha KJ, Forster BP, Szarejko I (eds) Doubled haploid production in crop plants: a manual. Kluwer, Dordrecht, pp 29-35.
4. Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao S, Varshney RK, Szuecs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genom. 10: 582.
5. Cuesta-Marcos A, Igartua E, Ciudad FJ, Codesal P, Russell JR, Molina-Cano JL, Moralejo M, Szucs P, Gracia MP, Lasa JM, Casas AM (2008) Heading date QTL in a spring × winter barley cross evaluated in Mediterranean environments. Mol Breed 21: 455-471.
6. Cuesta-Marcos A, Szucs P, Close TJ, Filichkin T, Muehlbauer GJ, Smith KP, Hayes PM (2010) Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure. BMC Genom. 11: 707.
7. Distelfeld A, Li C, Dubcovsky J (2009) Regulation of flowering in temperate cereals. Curr Opin Plant Biol 12: 178-184.
8. Dubcovsky J, Chen CL, Yan LL (2005) Molecular characterization of the allelic variation at the VRN-H2 vernalization locus in barley. Mol Breed 15: 395-407.
9. Faure S, Higgins J, Turner A, Laurie DA (2007) The FLOWERING LOCUS T-like gene family in barley (Hordeum vulgare). Genetics 176: 599-609.
10. Fowler S, Thomashow MF (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 14: 1675-1690.
11. Fowler DB, Breton G, Limin AE, Mahfoozi S, Sarhan F (2001) Photoperiod and temperature interactions regulate low-temperature-induced gene expression in barley. Plant Physiol 127: 1676-1681.
12. Francia E, Rizza F, Cattivelli L, Stanca AM, Galiba G, Toth B, Hayes PM, Skinner JS, Pecchioni N (2004) Two loci on chromosome 5H determine low-temperature tolerance in a 'Nure' (winter) × 'Tremois' (spring) barley map. Theor Appl Genet 108: 670-680.
13. Francia E, Barabaschi D, Tondelli A, Laido G, Rizza F, Stanca AM, Busconi M, Fogher C, Stockinger EJ, Pecchioni N (2007) Fine mapping of a HvCBF gene cluster at the frost resistance locus Fr-H2 in barley. Theor Appl Genet 115: 1083-1091.
14. Fu DL, Szucs P, Yan LL, Helguera M, Skinner JS, von Zitzewitz J, Hayes PM, Dubcovsky J (2005) Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat. Mol Genet Genom. 273: 54-65.
15. Galiba G, Quarrie SA, Sutka J, Morgounov A, Snape JW (1995) RFLP mapping of the vernalization (VRN1) and frost-resistance (FR1) genes on chromosome 5a of wheat. Theor Appl Genet 90: 1174-1179.
16. Galiba G, Vagujfalvi A, Li CX, Soltesz A, Dubcovsky J (2009) Regulatory genes involved in the determination of frost tolerance in temperate cereals. Plant Sci 176: 12-19.
17. Greenup A, Peacock WJ, Dennis ES, Trevaskis B (2009) The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals. Ann Bot 103: 1165-1172.
18. Hayes PM, Blake T, Chen THH, Tragoonrung S, Chen F, Pan A, Liu B (1993) Quantitative trait loci on barley (Hordeum vulgare L.) chromosome-7 associated with components of winterhardiness. Genome 36: 66-71.
19. Hemming MN, Peacock WJ, Dennis ES, Trevaskis B (2008) Low-temperature and daylength cues are integrated to regulate FLOWERING LOCUS T in barley. Plant Physiol 147: 355-366.
20. Karsai I, Szucs P, Meszaros K, Filichkina T, Hayes PM, Skinner JS, Lang L, Bedo Z (2005) The Vrn-H2 locus is a major determinant of flowering time in a facultative × winter growth habit barley (Hordeum vulgare L.) mapping population. Theor Appl Genet 110: 1458-1466.
21. Kikuchi R, Kawahigashi H, Ando T, Tonooka T, Handa H (2009) Molecular and functional characterization of PEBP genes in barley reveal the diversification of their roles in flowering. Plant Physiol 149(3): 1341-1353. doi: 10. 1104/pp. 108. 132134.
22. Knox AK, Dhillon T, Cheng HM, Tondelli A, Pecchioni N, Stockinger EJ (2010) CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals. Theor Appl Genet 121: 21-35.
23. Pan A, Hayes PM, Chen F, Chen THH, Blake T, Wright S, Karsai I, Bedo Z (1994) Genetic-analysis of the components of winterhardiness in barley (Hordeum vulgare L.). Theor Appl Genet 89: 900-910.
24. Rizza F, Pagani D, Gut M, Prasil IT, Lago C, Tondelli A, Orru L, Mazzucotelli E, Francia E, Badeck FW, Crosatti C, Terzi V, Cattivelli L, Stanca AM (2011) Diversity in the response to low temperature in representative barley genotypes cultivated in Europe. Crop Sci 51: 2759-2779.
25. SAS Institute (2006) The SAS system for Windows v. 9. 1. SAS Institute Inc. Cary, USA.
26. Sasani S, Hemming MN, Oliver SN, Greenup A, Tavakkol-Afshari R, Mahfoozi S, Poustini K, Sharifi H-R, Dennis ES, Peacock WJ, Trevaskis B (2009) The influence of vernalization and day length on expression of flowering-time genes in the shoot apex and leaves of barley (Hordeum vulgare). J Exp Bot 60: 2169-2178.
27. Skinner JS, von Zitzewitz J, Szucs P, Marquez-Cedillo L, Filichkin T, Amundsen K, Stockinger EJ, Thomashow MF, Chen THH, Hayes PM (2005) Structural, functional, and phylogenetic characterization of a large CBF gene family in barley. Plant Mol Biol 59: 533-551.
28. Skinner J, Szucs P, von Zitzewitz J, Marquez-Cedillo L, Filichkin T, Stockinger EJ, Thomashow MF, Chen THH, Hayes PM (2006) Mapping of barley homologs to genes that regulate low temperature tolerance in Arabidopsis. Theor Appl Genet 112: 832-842.
29. Stockinger EJ, Skinner JS, Gardner KG, Francia E, Pecchioni N (2007) Expression levels of barley Cbf genes at the Frost resistance-H2 locus are dependent upon alleles at Fr-H1 and Fr-H2. Plant J 51: 308-321.
30. Szucs P, Skinner JS, Karsai I, Cuesta-Marcos A, Haggard KG, Corey AE, Chen THH, Hayes PM (2007) Validation of the VNR-H2/VNR-H1 epistatic model in barley reveals that intron length variation in VNR-H1 may account for a continuum of vernalization sensitivity. Mol Genet Genom. 277: 249-261.
31. Takahashi R, Yasuda S (1971) Genetics of earliness and growth habit in barley. In: Nilan RA (ed) Barley genetics. II. Proceedings of the second international barley genetics symposium. Washington State University Press, Pullman, pp 388-408.
32. Trevaskis B (2010) The central role of the VERNALIZATION1 gene in the vernalization response of cereals. Funct Plant Biol 37: 479-487.
33. Trevaskis B, Hemming MN, Dennis ES, Peacock WJ (2007) The molecular basis of vernalization-induced flowering in cereals. Trends Plant Sci 12: 352-357.
34. Turner A, Beales J, Faure S, Dunford RP, Laurie DA (2005) The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 310: 1031-1034.
35. van Ooijen JW (2006) JoinMap 4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Wageningen.
36. von Zitzewitz J, Szucs P, Dubcovsky J, Yan LL, Francia E, Pecchioni N, Casas A, Chen THH, Hayes PM, Skinner JS (2005) Molecular and structural characterization of barley vernalization genes. Plant Mol Biol 59(3): 449-467.
37. von Zitzewitz J, Cuesta-Marcos A, Condon F, Castro AJ, Chao S, Corey A, Filichkin T, Fisk SP, Gutierrez L, Haggard K, Karsai I, Muehlbauer GJ, Smith KP, Veisz O, Hayes PM (2011) The genetics of winterhardiness in barley: perspectives from genome-wide association mapping. Plant Genome 4: 76-91.
38. Wang S, Basten CJ, Zeng Z-B (2010) Windows QTL Cartographer 2. 5. Department of Statistics, North Carolina State University, Raleigh, NC. http://statgen. ncsu. edu/qtlcart/WQTLCart. htm.
39. Yan LL, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, Dubcovsky J (2004) The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science 303(5664): 1640-1644.
40. Yan L, Fu D, Li C, Blechl A, Tranquilli G, Bonafede M, Sanchez A, Valarik M, Yasuda S, Dubcovsky J (2006) The wheat and barley vernalization gene VRN3FT. Proc Natl Acad Sci USA 103: 19581-19586.