-
1
-
-
79955666020
-
Introduction to current and future protein therapeutics: a protein engineering perspective
-
Carter PJ. Introduction to current and future protein therapeutics: a protein engineering perspective. Exp Cell Res 2011; 317: 1261-1269.
-
(2011)
Exp Cell Res
, vol.317
, pp. 1261-1269
-
-
Carter, P.J.1
-
2
-
-
33646352962
-
Potent antibody therapeutics by design
-
Carter PJ. Potent antibody therapeutics by design. Nat Rev Immunol 2006; 6: 343-357.
-
(2006)
Nat Rev Immunol
, vol.6
, pp. 343-357
-
-
Carter, P.J.1
-
3
-
-
33846140780
-
Antibody structure, instability, and formulation
-
Wang W, Singh S, Zeng DL, King K, Nema S. Antibody structure, instability, and formulation. J Pharm Sci 2007; 96: 1-26.
-
(2007)
J Pharm Sci
, vol.96
, pp. 1-26
-
-
Wang, W.1
Singh, S.2
Zeng, D.L.3
King, K.4
Nema, S.5
-
4
-
-
77953171768
-
Stability of protein pharmaceuticals: an update
-
Manning MC, Chou DK, Murphy BM, Payne RW, Katayama DS. Stability of protein pharmaceuticals: an update. Pharm Res 2010; 27: 544-575.
-
(2010)
Pharm Res
, vol.27
, pp. 544-575
-
-
Manning, M.C.1
Chou, D.K.2
Murphy, B.M.3
Payne, R.W.4
Katayama, D.S.5
-
5
-
-
80054949314
-
Aggregation in protein-based biotherapeutics: computational studies and tools to identify aggregation-prone regions
-
Agrawal NJ, Kumar S, Wang X, Helk B, Singh SK, Trout BL. Aggregation in protein-based biotherapeutics: computational studies and tools to identify aggregation-prone regions. J Pharm Sci 2011; 100: 5081-5095.
-
(2011)
J Pharm Sci
, vol.100
, pp. 5081-5095
-
-
Agrawal, N.J.1
Kumar, S.2
Wang, X.3
Helk, B.4
Singh, S.K.5
Trout, B.L.6
-
6
-
-
78650543555
-
Impact of product-related factors on immunogenicity of biotherapeutics
-
Singh SK. Impact of product-related factors on immunogenicity of biotherapeutics. J Pharm Sci 2011; 100: 354-387.
-
(2011)
J Pharm Sci
, vol.100
, pp. 354-387
-
-
Singh, S.K.1
-
7
-
-
84862893136
-
Relationship between potential aggregation-prone regions and HLA-DR-binding T-cell immune epitopes: implications for rational design of novel and follow-on therapeutic antibodies
-
Kumar S, Mitchell MA, Rup B, Singh SK. Relationship between potential aggregation-prone regions and HLA-DR-binding T-cell immune epitopes: implications for rational design of novel and follow-on therapeutic antibodies. J Pharm Sci 2012; 101: 2686-2701.
-
(2012)
J Pharm Sci
, vol.101
, pp. 2686-2701
-
-
Kumar, S.1
Mitchell, M.A.2
Rup, B.3
Singh, S.K.4
-
8
-
-
34247122497
-
The impact of glycosylation on the biological function and structure of human immunoglobulins
-
Arnold JN, Wormald MR, Sim RB, Rudd PM, Dwek RA. The impact of glycosylation on the biological function and structure of human immunoglobulins. Annu Rev Immunol 2007; 25: 21-50.
-
(2007)
Annu Rev Immunol
, vol.25
, pp. 21-50
-
-
Arnold, J.N.1
Wormald, M.R.2
Sim, R.B.3
Rudd, P.M.4
Dwek, R.A.5
-
9
-
-
77049127553
-
Dynamic fluctuations of protein-carbohydrate interactions promote protein aggregation
-
Voynov V, Chennamsetty N, Kayser V, Helk B, Forrer K, Zhang H, Fritsch C, Heine H, Trout BL. Dynamic fluctuations of protein-carbohydrate interactions promote protein aggregation. PLoS One 2009; 4: e8425.
-
(2009)
PLoS One
, vol.4
-
-
Voynov, V.1
Chennamsetty, N.2
Kayser, V.3
Helk, B.4
Forrer, K.5
Zhang, H.6
Fritsch, C.7
Heine, H.8
Trout, B.L.9
-
10
-
-
84862945390
-
Elucidation of acid-induced unfolding and aggregation of human immunoglobulin IgG1 and IgG2 Fc
-
Latypov RF, Hogan S, Lau H, Gadgil H, Liu D. Elucidation of acid-induced unfolding and aggregation of human immunoglobulin IgG1 and IgG2 Fc. J Biol Chem 2012; 287: 1381-1396.
-
(2012)
J Biol Chem
, vol.287
, pp. 1381-1396
-
-
Latypov, R.F.1
Hogan, S.2
Lau, H.3
Gadgil, H.4
Liu, D.5
-
11
-
-
81255197729
-
The impact of glycosylation on monoclonal antibody conformation and stability
-
Zheng K, Bantog C, Bayer R. The impact of glycosylation on monoclonal antibody conformation and stability. mAbs 2011; 3: 568-576.
-
(2011)
mAbs
, vol.3
, pp. 568-576
-
-
Zheng, K.1
Bantog, C.2
Bayer, R.3
-
12
-
-
84863470971
-
Marketing approval of mogamulizumab: a triumph for glyco-engineering
-
Beck A, Reichert JM. Marketing approval of mogamulizumab: a triumph for glyco-engineering. mAbs 2012; 4: 419-425.
-
(2012)
mAbs
, vol.4
, pp. 419-425
-
-
Beck, A.1
Reichert, J.M.2
-
13
-
-
79951838374
-
NMR analysis demonstrates immunoglobulin G N-glycans are accessible and dynamic
-
Barb AW, Prestegard JH. NMR analysis demonstrates immunoglobulin G N-glycans are accessible and dynamic. Nat Chem Biol 2011; 7: 147-153.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 147-153
-
-
Barb, A.W.1
Prestegard, J.H.2
-
16
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The protein data bank. Nucleic Acids Res 2000; 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
17
-
-
67749111952
-
Design of therapeutic proteins with enhanced stability
-
Chennamsetty N, Voynov V, Kayser V, Helk B, Trout BL. Design of therapeutic proteins with enhanced stability. Proc Natl Acad Sci U S A 2009; 106: 11937-11942.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 11937-11942
-
-
Chennamsetty, N.1
Voynov, V.2
Kayser, V.3
Helk, B.4
Trout, B.L.5
-
18
-
-
5044235541
-
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
-
Fernandez-Escamilla A-M, Rousseau F, Schymkowitz J, Serrano L. Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. Nat Biotechnol 2004; 22: 1302-1306.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1302-1306
-
-
Fernandez-Escamilla, A.-M.1
Rousseau, F.2
Schymkowitz, J.3
Serrano, L.4
-
19
-
-
25844466604
-
Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences
-
Tartaglia GG, Cavalli A, Pellarin R, Caflisch A. Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences. Prot Sci 2005; 14: 2723-2734.
-
(2005)
Prot Sci
, vol.14
, pp. 2723-2734
-
-
Tartaglia, G.G.1
Cavalli, A.2
Pellarin, R.3
Caflisch, A.4
-
20
-
-
77955467854
-
Potential aggregation-prone regions in complementarity-determining regions of antibodies and their contribution towards antigen recognition: a computational analysis
-
Wang X, Singh SK, Kumar S. Potential aggregation-prone regions in complementarity-determining regions of antibodies and their contribution towards antigen recognition: a computational analysis. Pharm Res 2010; 27: 1512-1529.
-
(2010)
Pharm Res
, vol.27
, pp. 1512-1529
-
-
Wang, X.1
Singh, S.K.2
Kumar, S.3
-
21
-
-
0000035913
-
Temperature dependence of TIP3P, SPC, and TIP4P water from NPT Monte Carlo simulations: seeking temperatures of maximum density
-
William LJ, Corky J. Temperature dependence of TIP3P, SPC, and TIP4P water from NPT Monte Carlo simulations: seeking temperatures of maximum density. J Comput Chem 1998; 19: 1179-1186.
-
(1998)
J Comput Chem
, vol.19
, pp. 1179-1186
-
-
William, L.J.1
Corky, J.2
-
22
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kalé L, Schulten K. Scalable molecular dynamics with NAMD. J Comput Chem 2005; 26: 1781-1802.
-
(2005)
J Comput Chem
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kalé, L.9
Schulten, K.10
-
23
-
-
0032922174
-
A modified version of the Cornell force field with improved sugar pucker phases and helical repeat
-
Cheatham TEI, Cieplak P, Kollman PA. A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat. J Biomol Struct Dyn 1999; 16: 845-862.
-
(1999)
J Biomol Struct Dyn
, vol.16
, pp. 845-862
-
-
Cheatham, T.E.I.1
Cieplak, P.2
Kollman, P.A.3
-
24
-
-
39049147617
-
GLYCAM06: a generalizable biomolecular force field. Carbohydrates
-
Kirschner KN, Yongye AB, Tschampel SM, Gonzalez-Outeirino J, Daniels CR, Foley BL, Woods RJ. GLYCAM06: a generalizable biomolecular force field. Carbohydrates. J Comput Chem 2008; 29: 622-655.
-
(2008)
J Comput Chem
, vol.29
, pp. 622-655
-
-
Kirschner, K.N.1
Yongye, A.B.2
Tschampel, S.M.3
Gonzalez-Outeirino, J.4
Daniels, C.R.5
Foley, B.L.6
Woods, R.J.7
-
25
-
-
77955676745
-
Construction, MD Simulation, and hydrodynamic validation of an all-atom model of a monoclonal IgG antibody
-
Brandt JP, Patapoff TW, Aragon SR. Construction, MD Simulation, and hydrodynamic validation of an all-atom model of a monoclonal IgG antibody. Biophys J 2010; 99: 905-913.
-
(2010)
Biophys J
, vol.99
, pp. 905-913
-
-
Brandt, J.P.1
Patapoff, T.W.2
Aragon, S.R.3
-
26
-
-
67650683480
-
Aggregation-prone motifs in human immunoglobulin G
-
Chennamsetty N, Helk B, Voynov V, Kayser V, Trout BL. Aggregation-prone motifs in human immunoglobulin G. J Mol Biol 2009; 391: 404-413.
-
(2009)
J Mol Biol
, vol.391
, pp. 404-413
-
-
Chennamsetty, N.1
Helk, B.2
Voynov, V.3
Kayser, V.4
Trout, B.L.5
-
27
-
-
83555173535
-
Disulfide scrambling in IgG2 monoclonal antibodies: insights from molecular dynamics simulations
-
Wang X, Kumar S, Singh SK. Disulfide scrambling in IgG2 monoclonal antibodies: insights from molecular dynamics simulations. Pharm Res 2011; 28: 3128-3144.
-
(2011)
Pharm Res
, vol.28
, pp. 3128-3144
-
-
Wang, X.1
Kumar, S.2
Singh, S.K.3
-
28
-
-
0030580057
-
Antibody-antigen interactions: contact analysis and binding site topography
-
MacCallum RM, Martin ACR, Thornton JM. Antibody-antigen interactions: contact analysis and binding site topography. J Mol Biol 1996; 262: 732-745.
-
(1996)
J Mol Biol
, vol.262
, pp. 732-745
-
-
MacCallum, R.M.1
Martin, A.C.R.2
Thornton, J.M.3
-
30
-
-
0015222647
-
The interpretation of protein structures: estimation of static accessibility
-
Lee B, Richards FM. The interpretation of protein structures: estimation of static accessibility. J Mol Biol 1971; 55: 379-380.
-
(1971)
J Mol Biol
, vol.55
, pp. 379-380
-
-
Lee, B.1
Richards, F.M.2
-
31
-
-
77955466435
-
Identification and impact of aggregation prone regions in proteins and therapeutic mAbs
-
In: Wang W,Roberts CJ, editors. . Hoboken: Wiley;
-
Kumar S, Wang X, Singh SK. Identification and impact of aggregation prone regions in proteins and therapeutic mAbs. In: Wang W, Roberts CJ, editors. Aggregation of therapeutic proteins. Hoboken: Wiley; 2010. pp 103-118.
-
(2010)
Aggregation of therapeutic proteins
, pp. 103-118
-
-
Kumar, S.1
Wang, X.2
Singh, S.K.3
-
32
-
-
34249290108
-
Atomic structures of amyloid cross-b spines reveal varied steric zippers
-
Sawaya MR, Sambashivan S, Nelson R, Ivanova MI, Sievers SA, Apostol MI, Thompson MJ, Balbirnie M, Wiltzius JJW, McFarlane HT, Madsen AO, Riekel C, Eisenberg D. Atomic structures of amyloid cross-b spines reveal varied steric zippers. Nature 2007; 447: 453-457.
-
(2007)
Nature
, vol.447
, pp. 453-457
-
-
Sawaya, M.R.1
Sambashivan, S.2
Nelson, R.3
Ivanova, M.I.4
Sievers, S.A.5
Apostol, M.I.6
Thompson, M.J.7
Balbirnie, M.8
Wiltzius, J.J.W.9
McFarlane, H.T.10
Madsen, A.O.11
Riekel, C.12
Eisenberg, D.13
-
33
-
-
20444440728
-
Structure of the cross-b spine of amyloid-like fibrils
-
Nelson R, Sawaya MR, Balbirnie M, Madsen AO, Riekel C, Grothe R, Eisenberg D. Structure of the cross-b spine of amyloid-like fibrils. Nature 2005; 435: 773-778.
-
(2005)
Nature
, vol.435
, pp. 773-778
-
-
Nelson, R.1
Sawaya, M.R.2
Balbirnie, M.3
Madsen, A.O.4
Riekel, C.5
Grothe, R.6
Eisenberg, D.7
-
34
-
-
33749818217
-
The structural biology of protein aggregation diseases: fundamental questions and some answers
-
Eisenberg D, Nelson R, Sawaya MR, Balbirnie M, Sambashivan S, Ivanova MI, Madsen AO, Riekel C. The structural biology of protein aggregation diseases: fundamental questions and some answers. Acc Chem Res 2006; 39: 568-575.
-
(2006)
Acc Chem Res
, vol.39
, pp. 568-575
-
-
Eisenberg, D.1
Nelson, R.2
Sawaya, M.R.3
Balbirnie, M.4
Sambashivan, S.5
Ivanova, M.I.6
Madsen, A.O.7
Riekel, C.8
-
35
-
-
50249144570
-
Bacterial inclusion bodies contain amyloid-like structure
-
Wang L, Maji SK, Sawaya MR, Eisenberg D, Riek R. Bacterial inclusion bodies contain amyloid-like structure. PLoS Biol 2008; 6: 1791-1801.
-
(2008)
PLoS Biol
, vol.6
, pp. 1791-1801
-
-
Wang, L.1
Maji, S.K.2
Sawaya, M.R.3
Eisenberg, D.4
Riek, R.5
-
36
-
-
77649265357
-
Exploring the sequence determinants of amyloid structure using position-specific scoring matrices
-
Maurer-Stroh S, Debulpaep M, Kuemmerer N, de la Paz ML, Martins IC, Reumers J, Morris KL, Copland A, Serpell L, Serrano L, Schymkowitz JWH, Rousseau F. Exploring the sequence determinants of amyloid structure using position-specific scoring matrices. Nat Methods 2010; 7: 237-242.
-
(2010)
Nat Methods
, vol.7
, pp. 237-242
-
-
Maurer-Stroh, S.1
Debulpaep, M.2
Kuemmerer, N.3
de la Paz, M.L.4
Martins, I.C.5
Reumers, J.6
Morris, K.L.7
Copland, A.8
Serpell, L.9
Serrano, L.10
Schymkowitz, J.W.H.11
Rousseau, F.12
-
37
-
-
79251577383
-
Large proteins have a great tendency to aggregate but a low propensity to form amyloid fibrils
-
Ramshini H, Parrini C, Relini A, Zampagni M, Mannini B, Pesce A, Saboury AA, Nemat-Gorgani M, Chiti F. Large proteins have a great tendency to aggregate but a low propensity to form amyloid fibrils. PLoS One 2011; 6: e16075.
-
(2011)
PLoS One
, vol.6
-
-
Ramshini, H.1
Parrini, C.2
Relini, A.3
Zampagni, M.4
Mannini, B.5
Pesce, A.6
Saboury, A.A.7
Nemat-Gorgani, M.8
Chiti, F.9
-
38
-
-
34047270107
-
A role for protein misfolding in immunogenicity of biopharmaceuticals
-
Maas C, Hermeling S, Bouma B, Jiskoot W, Gebbink MFBG. A role for protein misfolding in immunogenicity of biopharmaceuticals. J Biol Chem 2007; 282: 2229-2236.
-
(2007)
J Biol Chem
, vol.282
, pp. 2229-2236
-
-
Maas, C.1
Hermeling, S.2
Bouma, B.3
Jiskoot, W.4
Gebbink, M.F.B.G.5
-
39
-
-
79954494833
-
Nonnative aggregation of an IgG1 antibody in acidic conditions. II. Nucleation and growth kinetics with competing growth mechanisms
-
Brummitt RK, Nesta DP, Chang L, Kroetsch AM, Roberts CJ. Nonnative aggregation of an IgG1 antibody in acidic conditions. II. Nucleation and growth kinetics with competing growth mechanisms. J Pharm Sci 2011; 100: 2104-2119.
-
(2011)
J Pharm Sci
, vol.100
, pp. 2104-2119
-
-
Brummitt, R.K.1
Nesta, D.P.2
Chang, L.3
Kroetsch, A.M.4
Roberts, C.J.5
-
40
-
-
68649088039
-
Physiological responses to protein aggregates: fibrinolysis, coagulation and inflammation (new roles for old factors)
-
Gebbink MF, Bouma B, Maas C, Bouma BN. Physiological responses to protein aggregates: fibrinolysis, coagulation and inflammation (new roles for old factors). FEBS Lett 2009; 583: 2691-2699.
-
(2009)
FEBS Lett
, vol.583
, pp. 2691-2699
-
-
Gebbink, M.F.1
Bouma, B.2
Maas, C.3
Bouma, B.N.4
-
41
-
-
80054743161
-
Oxidized and aggregated recombinant human interferon beta is immunogenic in human interferon beta transgenic mice
-
van Beers MM, Sauerborn M, Gilli F, Brinks V, Schellekens H, Jiskoot W. Oxidized and aggregated recombinant human interferon beta is immunogenic in human interferon beta transgenic mice. Pharm Res 2011; 28: 2393-2402.
-
(2011)
Pharm Res
, vol.28
, pp. 2393-2402
-
-
van Beers, M.M.1
Sauerborn, M.2
Gilli, F.3
Brinks, V.4
Schellekens, H.5
Jiskoot, W.6
-
42
-
-
77955467854
-
Potential aggregation-prone regions in complementarity-determining regions of antibodies and their contribution towards antigen recognition: a computational analysis
-
Wang X, Singh S, Kumar S. Potential aggregation-prone regions in complementarity-determining regions of antibodies and their contribution towards antigen recognition: a computational analysis. Pharm Res 2010; 27: 1512-1529.
-
(2010)
Pharm Res
, vol.27
, pp. 1512-1529
-
-
Wang, X.1
Singh, S.2
Kumar, S.3
-
43
-
-
84864150265
-
Computational methods to predict therapeutic protein aggregation
-
Buck PM, Kumar S, Wang X, Agrawal NJ, Trout BL, Singh SK. Computational methods to predict therapeutic protein aggregation. Methods Mol Biol 2012; 899: 425-451.
-
(2012)
Methods Mol Biol
, vol.899
, pp. 425-451
-
-
Buck, P.M.1
Kumar, S.2
Wang, X.3
Agrawal, N.J.4
Trout, B.L.5
Singh, S.K.6
-
44
-
-
77953655331
-
Potential aggregation prone regions in biotherapeutics: a survey of commercial monoclonal antibodies
-
Wang X, Das TK, Singh SK, Kumar S. Potential aggregation prone regions in biotherapeutics: a survey of commercial monoclonal antibodies. mAbs 2009; 1: 1-14.
-
(2009)
mAbs
, vol.1
, pp. 1-14
-
-
Wang, X.1
Das, T.K.2
Singh, S.K.3
Kumar, S.4
-
46
-
-
84873077928
-
-
Insights into the aggregation liabilities of a human Fab via high temperature molecular dynamic simulations. Protein Eng, in press.
-
Buck PM, Kumar S, Singh SK. Insights into the aggregation liabilities of a human Fab via high temperature molecular dynamic simulations. Protein Eng, in press.
-
-
-
Buck, P.M.1
Kumar, S.2
Singh, S.K.3
-
47
-
-
33748689799
-
Simulations as analytical tools to understand protein aggregation and predict amyloid conformation
-
Ma B, Nussinov R. Simulations as analytical tools to understand protein aggregation and predict amyloid conformation. Curr Opin Chem Biol 2006; 10: 445-452.
-
(2006)
Curr Opin Chem Biol
, vol.10
, pp. 445-452
-
-
Ma, B.1
Nussinov, R.2
-
48
-
-
84855438639
-
Experimental free energy surfaces reveal the mechanisms of maintenance of protein solubility
-
De Simone A, Dhulesia A, Soldi G, Vendruscolo M, Hsu ST, Chiti F, Dobson CM. Experimental free energy surfaces reveal the mechanisms of maintenance of protein solubility. Proc Natl Acad Sci U S A 2011; 108: 21057-21062.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 21057-21062
-
-
De Simone, A.1
Dhulesia, A.2
Soldi, G.3
Vendruscolo, M.4
Hsu, S.T.5
Chiti, F.6
Dobson, C.M.7
-
49
-
-
84860013075
-
Structure of an intermediate state in protein folding and aggregation
-
Neudecker P, Robustelli P, Cavalli A, Walsh P, Lundstrom P, Zarrine-Afsar A, Sharpe S, Vendruscolo M, Kay LE. Structure of an intermediate state in protein folding and aggregation. Science 2012; 336: 362-366.
-
(2012)
Science
, vol.336
, pp. 362-366
-
-
Neudecker, P.1
Robustelli, P.2
Cavalli, A.3
Walsh, P.4
Lundstrom, P.5
Zarrine-Afsar, A.6
Sharpe, S.7
Vendruscolo, M.8
Kay, L.E.9
-
50
-
-
79953081933
-
Coarse-grained models for protein aggregation
-
Wu C, Shea JE. Coarse-grained models for protein aggregation. Curr Opin Struct Biol 2011; 21: 209-220.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 209-220
-
-
Wu, C.1
Shea, J.E.2
-
51
-
-
84864143123
-
Coarse-grained simulations of protein aggregation
-
Cellmer T, Fawzi NL. Coarse-grained simulations of protein aggregation. Methods in molecular biology 2012; 899: 453-470.
-
(2012)
Methods in molecular biology
, vol.899
, pp. 453-470
-
-
Cellmer, T.1
Fawzi, N.L.2
-
52
-
-
80052270546
-
Predicting accelerated aggregation rates for monoclonal antibody formulations, and challenges for low-temperature predictions
-
Brummitt RK, Nesta DP, Roberts CJ. Predicting accelerated aggregation rates for monoclonal antibody formulations, and challenges for low-temperature predictions. J Pharm Sci 2011; 100: 4234-4243.
-
(2011)
J Pharm Sci
, vol.100
, pp. 4234-4243
-
-
Brummitt, R.K.1
Nesta, D.P.2
Roberts, C.J.3
-
53
-
-
79955591497
-
Evaluation of a non-Arrhenius model for therapeutic monoclonal antibody aggregation
-
Kayser V, Chennamsetty N, Voynov V, Helk B, Forrer K, Trout BL. Evaluation of a non-Arrhenius model for therapeutic monoclonal antibody aggregation. J Pharm Sci 2011; 100: 2526-2542.
-
(2011)
J Pharm Sci
, vol.100
, pp. 2526-2542
-
-
Kayser, V.1
Chennamsetty, N.2
Voynov, V.3
Helk, B.4
Forrer, K.5
Trout, B.L.6
-
54
-
-
76749161776
-
Potentially amyloidogenic conformational intermediates populate the unfolding landscape of transthyretin: insights from molecular dynamics simulations
-
Rodrigues JR, Simoes CJ, Silva CG, Brito RM. Potentially amyloidogenic conformational intermediates populate the unfolding landscape of transthyretin: insights from molecular dynamics simulations. Prot Sci 2010; 19: 202-219.
-
(2010)
Prot Sci
, vol.19
, pp. 202-219
-
-
Rodrigues, J.R.1
Simoes, C.J.2
Silva, C.G.3
Brito, R.M.4
-
55
-
-
79955690859
-
Structural and thermodynamic investigations on the aggregation and folding of acylphosphatase by molecular dynamics simulations and solvation free energy analysis
-
Chong SH, Lee C, Kang G, Park M, Ham S. Structural and thermodynamic investigations on the aggregation and folding of acylphosphatase by molecular dynamics simulations and solvation free energy analysis. J Am Chem Soc 2011; 133: 7075-7083.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 7075-7083
-
-
Chong, S.H.1
Lee, C.2
Kang, G.3
Park, M.4
Ham, S.5
-
56
-
-
1442275655
-
Immunoglobulin kappa light chain and its amyloidogenic mutants: a molecular dynamics study
-
Nowak M. Immunoglobulin kappa light chain and its amyloidogenic mutants: a molecular dynamics study. Proteins 2004; 55: 11-21.
-
(2004)
Proteins
, vol.55
, pp. 11-21
-
-
Nowak, M.1
-
57
-
-
84860822166
-
Intrinsic disorder modulates protein self-assembly and aggregation
-
De Simone A, Kitchen C, Kwan AH, Sunde M, Dobson CM, Frenkel D. Intrinsic disorder modulates protein self-assembly and aggregation. Proc Natl Acad Sci U S A 2012; 109: 6951-6956.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 6951-6956
-
-
De Simone, A.1
Kitchen, C.2
Kwan, A.H.3
Sunde, M.4
Dobson, C.M.5
Frenkel, D.6
-
58
-
-
84861872576
-
Characterizing intermolecular interactions that initiate native-like protein aggregation
-
Bemporad F, De Simone A, Chiti F, Dobson CM. Characterizing intermolecular interactions that initiate native-like protein aggregation. Biophys J 2012; 102: 2595-2604.
-
(2012)
Biophys J
, vol.102
, pp. 2595-2604
-
-
Bemporad, F.1
De Simone, A.2
Chiti, F.3
Dobson, C.M.4
-
59
-
-
77958494726
-
Rationalization of poor solubility of TGF-beta3 using MD simulation
-
Nayeem SM, Deep S. Rationalization of poor solubility of TGF-beta3 using MD simulation. Biochem Biophys Res Commun 2010; 401: 544-547.
-
(2010)
Biochem Biophys Res Commun
, vol.401
, pp. 544-547
-
-
Nayeem, S.M.1
Deep, S.2
-
60
-
-
0037381819
-
Simulations of human lysozyme: probing the conformations triggering amyloidosis
-
Moraitakis G, Goodfellow JM. Simulations of human lysozyme: probing the conformations triggering amyloidosis. Biophys J 2003; 84: 2149-2158.
-
(2003)
Biophys J
, vol.84
, pp. 2149-2158
-
-
Moraitakis, G.1
Goodfellow, J.M.2
-
61
-
-
0037022563
-
Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation
-
Richardson JS, Richardson DC. Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation. Proc Natl Acad Sci U S A 2002; 99: 2754-2759.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 2754-2759
-
-
Richardson, J.S.1
Richardson, D.C.2
-
62
-
-
41549161190
-
The degree of structural protection at the edge beta-strands determines the pathway of amyloid formation in globular proteins
-
Soldi G, Bemporad F, Chiti F. The degree of structural protection at the edge beta-strands determines the pathway of amyloid formation in globular proteins. J Am Chem Soc 2008; 130: 4295-4302.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 4295-4302
-
-
Soldi, G.1
Bemporad, F.2
Chiti, F.3
-
63
-
-
0141523251
-
Beta edge strands in protein structure prediction and aggregation
-
Siepen JA, Radford SE, Westhead DR. Beta edge strands in protein structure prediction and aggregation. Prot Sci 2003; 12: 2348-2359.
-
(2003)
Prot Sci
, vol.12
, pp. 2348-2359
-
-
Siepen, J.A.1
Radford, S.E.2
Westhead, D.R.3
-
64
-
-
0035920156
-
Tetramer dissociation and monomer partial unfolding precedes protofibril formation in amyloidogenic transthyretin variants
-
Quintas A, Vaz DC, Cardoso I, Saraiva MJ, Brito RM. Tetramer dissociation and monomer partial unfolding precedes protofibril formation in amyloidogenic transthyretin variants. J Biol Chem 2001; 276: 27207-27213.
-
(2001)
J Biol Chem
, vol.276
, pp. 27207-27213
-
-
Quintas, A.1
Vaz, D.C.2
Cardoso, I.3
Saraiva, M.J.4
Brito, R.M.5
-
65
-
-
67649782189
-
Engineered human antibody constant domains with increased stability
-
Gong R, Vu BK, Feng Y, Prieto DA, Dyba MA, Walsh JD, Prabakaran P, Veenstra TD, Tarasov SG, Ishima R, Dimitrov DS. Engineered human antibody constant domains with increased stability. J Biol Chem 2009; 284: 14203-14210.
-
(2009)
J Biol Chem
, vol.284
, pp. 14203-14210
-
-
Gong, R.1
Vu, B.K.2
Feng, Y.3
Prieto, D.A.4
Dyba, M.A.5
Walsh, J.D.6
Prabakaran, P.7
Veenstra, T.D.8
Tarasov, S.G.9
Ishima, R.10
Dimitrov, D.S.11
-
66
-
-
79960992429
-
Shortened engineered human antibody CH2 domains: increased stability and binding to the human neonatal Fc receptor
-
Gong R, Wang Y, Feng Y, Zhao Q, Dimitrov DS. Shortened engineered human antibody CH2 domains: increased stability and binding to the human neonatal Fc receptor. J Biol Chem 2011; 286: 27288-27293.
-
(2011)
J Biol Chem
, vol.286
, pp. 27288-27293
-
-
Gong, R.1
Wang, Y.2
Feng, Y.3
Zhao, Q.4
Dimitrov, D.S.5
-
67
-
-
84864841234
-
N-glycosylation of enhanced aromatic sequons to increase glycoprotein stability
-
Price JL, Culyba EK, Chen W, Murray AN, Hanson SR, Wong CH, Powers ET, Kelly JW. N-glycosylation of enhanced aromatic sequons to increase glycoprotein stability. Biopolymers 2012; 98: 195-211.
-
(2012)
Biopolymers
, vol.98
, pp. 195-211
-
-
Price, J.L.1
Culyba, E.K.2
Chen, W.3
Murray, A.N.4
Hanson, S.R.5
Wong, C.H.6
Powers, E.T.7
Kelly, J.W.8
|