A GAL4-based targeted activation tagging system in Arabidopsis thaliana

Plant Journal

Volumn 73, Issue 3, 2013, Pages 357-367

  Waki, Takamitsu ^a   Miyashima, Shunsuke ^a,c   Nakanishi, Miyako ^a   Ikeda, Yoichi ^a   Hashimoto, Takashi ^a   Nakajima, Keiji ^a,b  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c UNIVERSITY OF HELSINKI   (Finland)

Author keywords

activation tagging; Arabidopsis thaliana; GAL4; pattern formation; root; technical advance; transcription factor

Indexed keywords

ACTIVATION TAGGING; ARABIDOPSIS THALIANA; GAL4; PATTERN FORMATION; ROOT; TECHNICAL ADVANCES;

CHEMICAL ACTIVATION; GENES; PLANTS (BOTANY); THESAURI; TISSUE; TRANSCRIPTION FACTORS;

TRANSCRIPTION;

ARABIDOPSIS PROTEIN; TRANSCRIPTION FACTOR;

ARABIDOPSIS; ARTICLE; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTAGENESIS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT GENE; PLANT ROOT; PROMOTER REGION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENES, PLANT; MOLECULAR SEQUENCE DATA; MUTAGENESIS; PLANT ROOTS; PROMOTER REGIONS, GENETIC; TRANSCRIPTION FACTORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84873058227     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12049     Document Type: Article

References (41)

1. Aoyama, T., and, Chua, N.H., (1997) A glucocorticoid-mediated transcriptional induction system in transgenic plants. Plant J. 11, 605-612.
2. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
3. Becker, D., (1990) Binary vectors which allow the exchange of plant selectable markers and reporter genes. Nucleic Acids Res. 18, 203.
4. Bennett, T., van den Toorn, A., Sanchez-Perez, G.F., Campilho, A., Willemsen, V., Snel, B., and, Scheres, B., (2010) SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis. Plant Cell, 22, 640-654.
5. Brady, S.M., Zhang, L., Megraw, M., et al,. (2011) A stele-enriched gene regulatory network in the Arabidopsis root. Mol. Syst. Biol. 7, 459.
6. Brand, A.H., and, Perrimon, N., (1993) Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development, 118, 401-415.
7. Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
8. Colon-Carmona, A., You, R., Haimovitch-Gal, T., and, Doerner, P., (1999) Spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein. Plant J. 20, 503-508.
9. Galinha, C., Hofhuis, H., Luijten, M., Willemsen, V., Blilou, I., Heidstra, R., and, Scheres, B., (2007) PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature, 449, 1053-1057.
10. Haseloff, J., (1999) GFP variants for multispectral imaging of living cells. Methods Cell Biol. 58, 139-151.
11. Heidstra, R., Welch, D., and, Scheres, B., (2004) Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division. Genes Dev. 18, 1964-1969.
12. Helariutta, Y., Fukaki, H., Wysocka-Diller, J., Nakajima, K., Jung, J., Sena, G., Hauser, M., and, Benfey, P., (2000) The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling. Cell, 101, 555-567.
13. Hiratsu, K., Matsui, K., Koyama, T., and, Ohme-Takagi, M., (2003) Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34, 733-739.
14. Ichikawa, T., Nakazawa, M., Kawashima, M., et al,. (2006) The FOX hunting system: an alternative gain-of-function gene hunting technique. Plant J. 48, 974-985.
15. Iuchi, S., Suzuki, H., Kim, Y.C., et al,. (2007) Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal. Plant J. 50, 958-966.
16. Kiegle, E., Moore, C.A., Haseloff, J., Tester, M.A., and, Knight, M.R., (2000) Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root. Plant J. 23, 267-278.
17. Koszegi, D., Johnston, A.J., Rutten, T., et al,. (2011) Members of the RKD transcription factor family induce an egg cell-like gene expression program. Plant J. 67, 280-291.
18. Krizek, B.A., and, Eaddy, M., (2012) AINTEGUMENTA-LIKE6 regulates cellular differentiation in flowers. Plant Mol. Biol. 78, 199-209.
19. Lee, J.Y., Colinas, J., Wang, J.Y., Mace, D., Ohler, U., and, Benfey, P.N., (2006) Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc. Natl Acad. Sci. USA, 103, 6055-6060.
20. Liu, Y.G., Mitsukawa, N., Oosumi, T., and, Whittier, R.F., (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8, 457-463.
21. Lloyd, A.M., Schena, M., Walbot, V., and, Davis, R.W., (1994) Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator. Science, 266, 436-439.
22. Marsch-Martinez, N., Greco, R., Van Arkel, G., Herrera-Estrella, L., and, Pereira, A., (2002) Activation tagging using the En-I maize transposon system in Arabidopsis. Plant Physiol. 129, 1544-1556.
23. Masucci, J.D., Rerie, W.G., Foreman, D.R., Zhang, M., Galway, M.E., Marks, M.D., and, Schiefelbein, J.W., (1996) The homeobox gene GLABRA2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana. Development, 122, 1253-1260.
24. Miyashima, S., Hashimoto, T., and, Nakajima, K., (2009) ARGONAUTE1 acts in Arabidopsis root radial pattern formation independently of the SHR/SCR pathway. Plant Cell Physiol. 50, 626-634.
25. Miyashima, S., Koi, S., Hashimoto, T., and, Nakajima, K., (2011) Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root. Development, 138, 2303-2313.
26. Multinational Arabidopsis Steering Committee (2002) The Multinational Arabidopsis thaliana Functional Genomics Project: Beyond the Whole Genome Sequence. Available at: http://www.arabidopsis.org/portals/masc/masc-docs/masc- reports.jsp (accessed 8 November 2012).
27. Multinational Arabidopsis Steering Committee (2010) The Multinational Arabidopsis thaliana Functional Genomics Project: Annual Report 2010 Available at: http://www.arabidopsis.org/portals/masc/masc-docs/masc-reports.jsp (accessed 8 November 2012).
28. Nakajima, K., Sena, G., Nawy, T., and, Benfey, P.N., (2001) Intercellular movement of the putative transcription factor SHR in root patterning. Nature, 413, 307-311.
29. Nakajima, K., Furutani, I., Tachimoto, H., Matsubara, H., and, Hashimoto, T., (2004) SPIRAL1 encodes a plant-specific microtubule-localized protein required for directional control of rapidly expanding Arabidopsis cells. Plant Cell, 16, 1178-1190.
30. Paquette, A.J., and, Benfey, P.N., (2005) Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT. Plant Physiol. 138, 636-640.
31. Petricka, J.J., Winter, C.M., and, Benfey, P.N., (2012) Control of Arabidopsis root development. Annu. Rev. Plant Biol. 63, 563-590.
32. Rorth, P., (1996) A modular misexpression screen in Drosophila detecting tissue-specific phenotypes. Proc. Natl Acad. Sci. USA, 93, 12418-12422.
33. Schauser, L., Wieloch, W., and, Stougaard, J., (2005) Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol. 60, 229-237.
34. Skirycz, A., Reichelt, M., Burow, M., et al,. (2006) DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. Plant J. 47, 10-24.
35. Tokunaga, H., Kojima, M., Kuroha, T., Ishida, T., Sugimoto, K., Kiba, T., and, Sakakibara, H., (2012) Arabidopsis lonely guy (LOG) multiple mutants reveal a central role of the LOG-dependent pathway in cytokinin activation. Plant J. 69, 355-365.
36. Velten, J., and, Schell, J., (1985) Selection-expression plasmid vectors for use in genetic transformation of higher plants. Nucleic Acids Res. 13, 6981-6998.
37. Waki, T., Hiki, T., Watanabe, R., Hashimoto, T., and, Nakajima, K., (2011) The Arabidopsis RWP-RK Protein RKD4 triggers gene expression and pattern formation in early embryogenesis. Curr. Biol. 21, 1277-1281.
38. Weigel, D., Ahn, J.H., Blazquez, M.A., et al,. (2000) Activation tagging in Arabidopsis. Plant Physiol. 122, 1003-1013.
39. Wenzel, C.L., and, Rost, T.L., (2001) Cell division patterns of the protoderm and root cap in the "closed" root apical meristem of Arabidopsis thaliana. Protoplasma, 218, 203-213.
40. Willemsen, V., Bauch, M., Bennett, T., Campilho, A., Wolkenfelt, H., Xu, J., Haseloff, J., and, Scheres, B., (2008) The NAC domain transcription factors FEZ and SOMBRERO control the orientation of cell division plane in Arabidopsis root stem cells. Dev. Cell, 15, 913-922.
41. Wuest, S.E., Vijverberg, K., Schmidt, A., Weiss, M., Gheyselinck, J., Lohr, M., Wellmer, F., Rahnenfuhrer, J., von Mering, C., and, Grossniklaus, U., (2010) Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr. Biol. 20, 506-512.