Industrial waste based compost as a source of novel cellulolytic strains and enzymes

FEMS Microbiology Letters

Volumn 339, Issue 2, 2013, Pages 93-101

  Amore, Antonella ^a   Pepe, Olimpia ^a   Ventorino, Valeria ^a   Birolo, Leila ^a   Giangrande, Chiara ^a   Faraco, Vincenza ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

Bacilli; Cellulase; Proteomics; Second generation ethanol

Indexed keywords

BACTERIAL ENZYME; CARBOXYMETHYLCELLULOSE; CELLULASE; GLUCAN SYNTHASE; RNA 16S;

ARTICLE; BACILLUS AMYLOLIQUEFACIENS; BACILLUS LICHENIFORMIS; BACILLUS SUBTILIS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BIOTECHNOLOGY; CARBON SOURCE; CATALYSIS; COMPOST; CONTROLLED STUDY; CULTURE OPTIMIZATION; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME PURIFICATION; ENZYME STABILITY; ENZYME SYNTHESIS; HEAT TOLERANCE; INCUBATION TEMPERATURE; INDUSTRIAL WASTE; LIQUID CULTURE; MICHAELIS MENTEN KINETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEOMICS; RNA SEQUENCE; SPECIES COMPARISON;

BACILLUS; CARBOXYMETHYLCELLULOSE SODIUM; CELLULASES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; HYDROLYSIS; INDUSTRIAL WASTE; KINETICS; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL; SOIL MICROBIOLOGY; TEMPERATURE;

BACILLI (CLASS); BACILLUS AMYLOLIQUEFACIENS; BACILLUS LICHENIFORMIS; BACILLUS SUBTILIS SUBSP. SPIZIZENII; BACILLUS SUBTILIS SUBSP. SUBTILIS;

EID: 84873056253     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/1574-6968.12057     Document Type: Article

References (41)

1. Abou-Taleb KAA, Mashhoor WA, Nasr SA, Sharaf MS & Abdel-Azeem HHM (2009) Nutritional and environmental factors affecting cellulase production by two strains of cellulolytic bacilli. Aust J Basic Appl Sci 3: 2429-2436.
2. Afzal S, Saleem M, Yasmin R, Naz M & Imran M (2010) Pre and post cloning characterization of a b-1, 4-endoglucanase from Bacillus sp. Mol Biol Rep 37: 1717-1723.
3. An D-S, Im W-T, Yang H-C, Kang MS, Kim KK, Jin L, Kim MK & Lee S-T (2005) Cellulomonas terrae sp. nov., a cellulolytic and xylanolytic bacterium isolated from soil. Int J Syst Evol Microbiol 55: 1705-1709.
4. Annamalai N, Thavasi R, Vijayalakshmi S & Balasubramanian T (2011) A novel thermostable and halostable carboxymethylcellulase from marine bacterium Bacillus licheniformis AU01. World J Microbiol Biotechnol 27: 2111-2115.
5. Baldrian P & Valásková V (2008) Degradation of cellulose by basidiomycetous fungi. FEMS Microbiol Rev 32: 501-521.
6. Beguin P (1983) Detection of cellulase activity in polyacrylamide gels using Congo red-stained agar replicas. Anal Biochem 131: 333-336.
7. Blaiotta G, Pepe O, Mauriello G, Villani F, Andolfi R & Moschetti G (2002) 16S-23S rDNA intergenic spacer region polymorphism of Lactococcus garvieae Lactococcus raffinolactis and Lactococcus lactis as revealed by PCR and nucleotide sequence analysis. Syst Appl Microbiol 25: 520-527.
8. Eida MF, Nagaoka T, Wasaki J & Kouno K (2012) Isolation and characterization of cellulose-decomposing bacteria inhabiting sawdust and coffee residue composts. Microbes Environ 27: 226-233.
9. Elberson MA, Malekzadeh F, Yazdi MT, Kameranpour N, Noori-Daloii MR, Matte MH, Shahamat M, Colwell RR & Sowers KR (2000) Cellulomonas persica sp. nov. and Cellulomonas iranensis sp. nov., mesophilic cellulose-degrading bacteria isolated from forest soils. Int J Syst Evol Microbiol 50: 993-996.
10. Fukumori F, Kudo T & Horikoshi K (1985) Purification and properties of a cellulase from alkalophilic Bacillus sp. No. 1139. J Gen Microbiol 131: 129-135.
11. Gupta P, Samant K & Sahu A (2012) Isolation of cellulose-degrading bacteria and determination of their cellulolytic potential. Int J Microbiol 2012: Article ID 578925: 5 pages.
12. Halebian S, Harris B, Finegold S & Rolfei R (1981) Rapid method that aids in distinguishing Gram-positive from Gram-negative anaerobic bacteria. J Clin Microbiol 13: 444-448.
13. Hanker JS & Rabin AN (1975) Color reaction streak test for catalase-positive microorganisms. J Clin Microbiol 2: 463-464.
14. Hankin L & Anagnostakis SL (1977) Solid media containing carboxymethylcellulose to detect CX cellulose activity of micro-organisms. J Gen Microbiol 98: 109-115.
15. Heck JX, Hertz PF & Ayub MAZ (2002) Cellulase and xylanase production by isolated amazon Bacillus strains using soybean industrial residue based solid-state cultivation. Braz J Microbiol 33: 213-218.
16. Immanuel G, Dhanusa R, Prema P & Palavesam A (2006) Effect of different growth parameters on endoglucanase enzyme activity by bacteria isolated from coir retting effluents of estuarine environment. Int J Environ Sci Technol 3: 25-34.
17. Kang M-S, Im W-T, Jung H-M, Kim MK, Goodfellow M, Kim KK, Yang H-C, An D-S & Lee S-T (2007) Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost. Int J Syst Evol Microbiol 57: 1256-1260.
18. Kawai S, Okosh H, Ozaki KS, Shikata KA & Ito S (1988) Neutrophilic Bacillus strain, KSM-522 that produces an alkaline carboxymethyl cellulase. Agric Biol Chem 52: 1425-1431.
19. Kim Y-K, Lee S-C, Cho Y-Y, Oh H-J & Ko YH (2012) Isolation of cellulolytic Bacillus subtilis strains from agricultural environments. ISRN Microbiol 2012: Article ID 650563: 9 pages.
20. Kluepfel D (1988) Screening of procaryotes for cellulose-and hemicellulose degrading enzymes. Methods Enzymol 160: 180-186.
21. Kotchoni SO, Gachomo EW, Omafuvbe BO & Shonukan OO (2006) Purification and biochemical characterization of carboxymethyl cellulase (CMCase) from a catabolite repression insensitive mutant of Bacillus pumilus. Int J Agric Biol 8: 286-292.
22. Kumar GS, Chandra MS, Sumanth M, Vishnupriya A, Reddy BR & Choi Y-L (2009) Cellulolytic enzymes production from submerged fermentation of different substrates by newly isolated Bacillus spp. FME J Korean Soc Appl Biol Chem 52: 17-21.
23. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
24. Lee YJ, Kim BK, Lee BH, Jo KI, Lee NK, Chung CH, Lee YC & Lee JW (2008) Purifcation and characterization of cellulase produced by Bacillus amyoliquefaciens DL-3 utilizing rice hull. Bioresour Technol 99: 378-386.
25. Lettera V, Piscitelli A, Leo G, Birolo L, Pezzella C & Sannia G (2010) Identification of a new member of Pleurotus ostreatus laccase family from mature fruiting body. Fungal Biol 114: 724-730.
26. Liang Y, Yesuf J, Schmitt S, Bender K & Bozzola J (2009) Study of cellulases from a newly isolated thermophilic and cellulolytic Brevibacillus sp. strain JXL. J Ind Microbiol Biotechnol 36: 961-970.
27. Lynd LR, Weimer PJ, van Zyl WH & Pretorius IS (2002) Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66: 506-577.
28. Lynd LR, Laser MS, Bransby D et al. (2008) How biotech can transform biofuels. Nat Biotechnol 26: 169-172.
29. Miller GL (1959) Use of dinitrosalicylic acid reagent for the determination of reducing sugar. Anal Chem 31: 426-428.
30. Moore RL, Basset BB & Swift MJ (1979) Developments in the Remazol Brilliant Blue dye-assay for studying the ecology of cellulose decomposition. Soil Biol Biochem 11: 311-312.
31. Paul J & Varma AK (1990) Influence of sugars on endoglucanase and β-xylanase activities of a Bacillus sp. Biotechnol Lett 60: 61-64.
32. Paul J & Varma AK (1993) Hydrolytic enzymes production in Micrococcus roseus growing on different cellulosic substrates. Lett Appl Microbiol 16: 167-169.
33. Rawat R & Tewari L (2012) Purification and characterization of an acidothermophilic cellulase enzyme produced by Bacillus subtilis strain LFS3. Extremophiles 16: 637-644.
34. Ray AK, Bairagi KS, Ghosh A & Sen SK (2007) Optimization of fermentation conditions for cellulaseproduction by Bacillus subtilis CY5 and Bacillus circulans TP3 isolated from fish gut. Acat Icht et Pist 37: 47-53.
35. Robson LM & Chambliss GH (1984) Characterization of the cellulolytic activity of a Bacillus isolate. Appl Environ Microbiol 47: 1039-1046.
36. Sakthivel M, Karthikeyan N, Jayaveny R & Palani P (2010) Optimization of culture conditions for the production of extracellular cellulase from Corynebacterium lipophiloflavum. J Ecobiotechnol 2/9: 6-13.
37. Sangkharak K, Vangsirikul P & Janthachat S (2011) Isolation of novel cellulase from agricultural soil and application for ethanol production. Int J Adv Biotechnol Res 2: 230-239.
38. Singh J, Batra N & Sobti RC (2004) Purification and characterisation of alkaline cellulase produced by a novel isolate, Bacillus sphaericus JS1. J Ind Microbiol Biotechnol 31: 51-56.
39. Tamaru Y, Miyake H, Kuroda K, Ueda M & Doi RH (2010) Comparative genomics of the mesophilic cellulosome-producing Clostridium cellulovorans and its application to biofuel production via consolidated bioprocessing. Environ Technol 31: 889-903.
40. Weisburg WG, Barns SM, Pelletier DA & Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173: 697-703.
41. Zhu C, Xu Z & Song R (2011) The endoglucanase from Bacillus subtilis BEC-1 bears halo-tolerant, acidophilic and dithiothreitol-stimulated enzyme activity. World J Microbiol Biotechnol 27: 2863-2871.