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Volumn , Issue , 2010, Pages 485-487

Extraction of genotype-phenotype-drug relationships from text: From entity recognition to bioinformatics application

Author keywords

Entity Recognition; Event Extraction; Genotype Phenotype Drug Relationships; NLP; Pharmacogenomics

Indexed keywords

ENTITY RECOGNITION; EVENT EXTRACTION; GENOTYPE-PHENOTYPE-DRUG RELATIONSHIPS; NLP; PHARMACOGENOMICS;

EID: 84873032104     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (7)

References (21)
  • 1
    • 84872117873 scopus 로고    scopus 로고
    • The BioCreative II - Critical assessment for information extraction in biology challenge
    • Lynette Hirschman, Martin Krallinger, John Wilbur and Alfonso Valencia, Editors. 'The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge', Genome Biology, 9(S2), (2008).
    • (2008) Genome Biology , vol.9 , Issue.S2
    • Hirschman, L.1    Krallinger, M.2    Wilbur, J.3    Valencia, A.4
  • 3
    • 0035752429 scopus 로고    scopus 로고
    • Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program
    • Alan R. Aronson, 'Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program'. Proceedings of the AMIA Symposium, pp. 17-21, (2001).
    • (2001) Proceedings of the AMIA Symposium , pp. 17-21
    • Aronson Alan, R.1
  • 6
    • 34547879631 scopus 로고    scopus 로고
    • MutationFinder: A high-performance system for extracting point mutation mentions from text
    • J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen and Lawrence Hunter, 'MutationFinder: a high-performance system for extracting point mutation mentions from text', Bioinformatics, 23(14), pp. 1862-1865, (2007).
    • (2007) Bioinformatics , vol.23 , Issue.14 , pp. 1862-1865
    • Gregory Caporaso, J.1    Baumgartner Jr., W.A.2    David, A.3    Randolph, K.4    Cohen, B.5    Hunter, L.6
  • 7
    • 84873049944 scopus 로고    scopus 로고
    • Proceedings of the European conference on computational biology (ECCB) 2008 workshop: Annotations, interpretation and management of mutations (AIMM)
    • Christopher J.O. Baker and Dietrich Rebholz-Schuhmann, Editors. 'Proceedings of the European Conference on Computational Biology (ECCB) 2008 Workshop: Annotations, interpretation and management of mutations (AIMM)', Bioinformatics, 10(S8), (2009).
    • (2009) Bioinformatics , vol.10 , Issue.S8
    • Christopher, J.O.1    Rebholz-Schuhmann, D.2
  • 8
    • 73949113973 scopus 로고    scopus 로고
    • Unsupervised method for automatic construction of a disease dictionary from a large free text collection
    • Rong Xu, Kaustubh Supekar, Alex Morgan, Amar Das and Alan M. Garber, 'Unsupervised Method for Automatic Construction of a Disease Dictionary from a Large Free Text Collection', Proceedings of the AMIA Symposium, (2008).
    • (2008) Proceedings of the AMIA Symposium
    • Xu, R.1    Supekar, K.2    Morgan, A.3    Das, A.4    Garber Alan, M.5
  • 9
    • 51249088163 scopus 로고    scopus 로고
    • Drug name recognition and classification in biomedical texts: A case study outlining approaches underpinning automated systems
    • Isabel Segura-Bedmar, Paloma Martnez and Mara Segura-Bedmar, 'Drug name recognition and classification in biomedical texts: A case study outlining approaches underpinning automated systems', Drug Discovery Today,13(17-18), pp. 816-823 (2008).
    • (2008) Drug Discovery Today , vol.13 , Issue.17-18 , pp. 816-823
    • Segura-Bedmar, I.1    Martnez, P.2    Segura-Bedmar, M.3
  • 10
    • 40549140499 scopus 로고    scopus 로고
    • Banner: An executable survey of advances in biomedical named entity recognition
    • Robert Leaman and Graciela Gonzalez, 'Banner: An executable survey of advances in biomedical named entity recognition', in Pacific Symposium on Biocomputing, pp. 652-663, (2008).
    • (2008) Pacific Symposium on Biocomputing , pp. 652-663
    • Leaman, R.1    Gonzalez, G.2
  • 11
    • 38349002957 scopus 로고    scopus 로고
    • Mining gene-disease relationships from biomedical literature: Weighting proteinprotein interactions and connectivity
    • Graciela Gonzalez, Juan C. Uribe, Luis Tari, Colleen Brophy and Chitta Baral, 'Mining gene-disease relationships from biomedical literature: Weighting proteinprotein interactions and connectivity', in Pacific Symposium on Biocomputing, pp. 28-39, (2007).
    • (2007) Pacific Symposium on Biocomputing , pp. 28-39
    • Gonzalez, G.1    Uribe, J.C.2    Tari, L.3    Brophy, C.4    Baral, C.5
  • 12
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • Tor-Kristian Jenssen, Astrid Laegreid, Jan Komorowski and Eivind Hovig, 'A literature network of human genes for high-throughput analysis of gene expression', Nature Genetics, 28(1), pp. 21-8, (2001).
    • (2001) Nature Genetics , vol.28 , Issue.1 , pp. 21-28
    • Jenssen, T.1    Laegreid, A.2    Komorowski, J.3    Hovig, E.4
  • 13
    • 63049114009 scopus 로고    scopus 로고
    • Pharmspresso: A text mining tool for extraction of pharmacogenomic concepts and relationships from full text
    • Yael Garten and Russ B. Altman, 'Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text', BMC Bioinformatics, 10(Suppl 2), S6, (2009).
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 2
    • Garten, Y.1    Altman, R.B.2
  • 14
    • 33847294345 scopus 로고    scopus 로고
    • Relex - Relation extraction using dependency parse trees
    • Katrin Fundel, Robert Kuffner and Ralf Zimmer, 'Relex - relation extraction using dependency parse trees', Bioinformatics, 23(3), 365-371, (2007).
    • (2007) Bioinformatics , vol.23 , Issue.3 , pp. 365-371
    • Fundel, K.1    Kuffner, R.2    Zimmer, R.3
  • 16
    • 41349107398 scopus 로고    scopus 로고
    • Opendmap: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
    • Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr, Helen L. Johnson, Philip V. Ogren and K. Bretonnel Cohen, 'Opendmap: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression', BMC Bioinformatics, 9(78), (2009).
    • (2009) BMC Bioinformatics , vol.9 , Issue.78
    • Hunter, L.1    Lu, Z.2    Firby, J.3    Baumgartner Jr., W.A.4    Johnson, H.L.5    Ogren, P.V.6    Bretonnel Cohen, K.7
  • 17
    • 59549091756 scopus 로고    scopus 로고
    • Evaluating contributions of natural language parsers to proteinprotein interaction extraction
    • Yusuke Miyao, Kenji Sagae, Rune Saetre, Takuya Matsuzaki and Jun'ichi Tsujii, 'Evaluating contributions of natural language parsers to proteinprotein interaction extraction', Bioinformatics, 25(3), 394-400, (2009).
    • (2009) Bioinformatics , vol.25 , Issue.3 , pp. 394-400
    • Miyao, Y.1    Sagae, K.2    Saetre, R.3    Matsuzaki, T.4    Tsujii, J.5
  • 20
    • 61949123893 scopus 로고    scopus 로고
    • Querying parse tree database of medline text to synthesize user-specific biomolecular networks
    • Luis Tari, Jorg Hakenberg, Graciela Gonzalez and Chitta Baral, 'Querying parse tree database of medline text to synthesize user-specific biomolecular networks', in Pacific Symposium on Biocomputing, pp. 87-98, (2009).
    • (2009) Pacific Symposium on Biocomputing , pp. 87-98
    • Tari, L.1    Hakenberg, J.2    Gonzalez, G.3    Baral, C.4
  • 21
    • 84873040259 scopus 로고    scopus 로고
    • Synthesis of pharmacokinetic pathways through knowledge acquisition and automated reasoning
    • Luis Tari, Saadat Anwar, Shanshan Liang, Jorg Hakenberg and Chitta Baral 'Synthesis of Pharmacokinetic Pathways Through Knowledge Acquisition and Automated Reasoning', in Pacific Symposium on Biocomputing, (2010).
    • (2010) Pacific Symposium on Biocomputing
    • Tari, L.1    Anwar, S.2    Liang, S.3    Hakenberg, J.4    Baral, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.