Fine-mapping of 5q12.1-13.3 unveils new genetic contributors to caries

Caries Research

Volumn 47, Issue 4, 2013, Pages 273-283

  Shimizu, T ^a   Deeley, K ^b   Briseno Ruiz J ^b   Faraco Jr , I M ^b   Poletta, F A ^c   Brancher, J A ^e   Pecharki, G D ^e   Kuchler E C ^f,g   Tannure, P N ^h   Lips, A ^h   Vieira, T C S ^f,g   Patir, A ^k   Yildirim, M ^l   Mereb, J C ^d   Resick, J M ^b   Brandon, C A ^b   Cooper, M E ^b   Seymen, F ^l   Costa, M C ^k   Granjeiro, J M ^f,g   Trevilatto, P C ^e   Orioli, I M ^h   Castilla, E E ^c,i,j   Marazita, M L ^b   Vieira, Alexandre R ^b   more..

^a NIHON UNIVERSITY   (Japan)

^b UNIVERSITY OF PITTSBURGH   (United States)

^c CEMIC   (Argentina)

^d ECLAMC at Hospital de Area El Bolson   (Argentina)

^e PONTIFICAL CATHOLIC UNIVERSITY OF PARANÁ   (Brazil)

^f FLUMINENSE FEDERAL UNIVERSITY   (Brazil)

^g INSTITUTO NACIONAL DE METROLOGIA   (Brazil)

^h FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

ⁱ INSTITUTO OSWALDO CRUZ   (Brazil)

^j Oswaldo Cruz Foundation ^*  (Turkey)

^k ISTANBUL MEDIPOL UNIVERSITY   (Turkey)

^l ISTANBUL UNIVERSITY   (Turkey)

more..

Author keywords

Dental caries susceptibility; Epidemiology; Genetics; Immune response genes; Saliva

Indexed keywords

NUCLEAR PROTEIN; SALIVA PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR BTF3;

ARTICLE; CASE CONTROL STUDY; CHROMOSOME 5; CHROMOSOME MAP; DENTAL CARIES; GENETICS; HEALTH SURVEY; HUMAN; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM;

CASE-CONTROL STUDIES; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 5; DENTAL CARIES; DENTAL CARIES SUSCEPTIBILITY; DMF INDEX; HUMANS; NUCLEAR PROTEINS; POLYMORPHISM, SINGLE NUCLEOTIDE; SALIVARY PROTEINS AND PEPTIDES; TRANSCRIPTION FACTORS;

EID: 84873028657     PISSN: 00086568     EISSN: None     Source Type: Journal    
DOI: 10.1159/000346278     Document Type: Article

References (30)

1. Abecasis GR, Cookson WO: GOLD - graphical overview of linkage disequilibrium. Bioinformatics 2000; 16: 182-183. (Pubitemid 30248598)
2. Adair PM, Pine CM, Burnside G, Nicoll AD, Gillett A, Anwar S, Broukal Z, Chestnutt IG, Declerck D, Ping FX, Ferro R, Freeman R, Grant- Mills D, Gugushe T, Hunsrisakhun J, Irigoyen- Camacho M, Lo EC, Moola MH, Naidoo S, Nyandindi U, Poulsen VJ, Ramos-Gomez F, Razanamihaja N, Shahid S, Skeie MS, Skur OP, Splieth C, Soo TC, Whelton H, Young DW: Familial and cultural perceptions and beliefs of oral hygiene and dietary practices among ethnically and socio-economically diverse groups. Community Dent Health 2004; 21: 102-111. (Pubitemid 38918780)
3. Barrett JC, Fry B, Maller J, Daly MJ: Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005; 21: 263-265. (Pubitemid 40202029)
4. Brancher JA, Pecharki GD, Doetzer AD, Medeiros KG, Cordeiro CA Jr, Sotomaior VS, Bauer P, Trevilatto PC: Analysis of polymorphisms in the lactotransferrin gene promoter and dental caries. Int J Dent 2011; 2011: 571726.
5. Brandeis M, Rosewell I, Carrington M, Crompton T, Jacobs MA, Kirk J, Gannon J, Hunt T: Cyclin B2-null mice develop normally and are fertile whereas cyclin B1-null mice die in utero. Proc Natl Acad Sci USA 1998; 95: 4344-4349.
6. Bretz WA, Corby PM, Melo MR, Coelho MQ, Costa SM, Robinson M, Schork NJ, Drewnowski A, Hart TC: Heritability estimates for dental caries and sucrose sweetness preference. Arch Oral Biol 2006; 51: 1156-1160. (Pubitemid 44692648)
7. Bretz WA, Corby PM, Schork NJ, Robinson MT, Coelho M, Costa S, Melo Filho MR, Weyant RJ, Hart TC: Longitudinal analysis of heritability for dental caries traits. J Dent Res 2005; 84: 1047-1051. (Pubitemid 43828154)
8. Conry JP, Messer LB, Boraas JC, Aeppli DP, Bouchard TJ Jr: Dental caries and treatment characteristics in human twins reared apart. Arch Oral Biol 1993; 38: 937-943. (Pubitemid 223068881)
9. Deeley K, Letra A, Rose EK, Brandon CA, Resick JM, Marazita ML, Vieira AR: Possible association of amelogenin to high caries experience in a Guatemalan-Mayan population. Caries Res 2008; 42: 8-13.
10. Dickson SP, Wang K, Krantz I, Hakonarson H, Goldstein DB: Rare variants create synthetic genome-wide associations. PLoS Biol 2010; 8:e1000294.
11. Gao XL, Hsu CY, Xu Y, Hwarng HB, Loh T, Koh D: Building caries risk assessment models for children. J Dent Res 2010; 89: 637-643.
12. Gascoyne DM, Long E, Veiga-Fernandes H, de Boer J, Williams O, Seddon B, Coles M, Kloussis D, Brady HJ: The basic leucine zipper transcription factor E4BP4 is essential for natural killer cell development. Nat Immunol 2009; 10: 1118-1124.
13. Horvath S, Xu X, Laird NM: The family based association test method: strategies for studying general genotype-phenotype associations. Eur J Hum Genet 2001; 9: 301-306. (Pubitemid 32366699)
14. Kusumawidjaja G, Kayed H, Giese N, Bauer A, Erkan M, Giese T, Hoheise JD, Friess H, Kleeff J: Basic transcription factor 3 (BTF3) regulates transcription of tumor-associated genes in pancreatic cancer cells. Cancer Biol Ther 2007; 6: 367-376. (Pubitemid 47328304)
15. Lin B, White JT, Ferguson C, Bumgarner R, Friedman C, Trask B, Ellis W, Lange P, Hood L, Nelson PS: PART-1: a novel human prostatespecific, androgen-regulated gene that maps to chromosome 5q12. Cancer Res 2000; 60: 858-863. (Pubitemid 30129515)
16. Livak KJ, Schmittgen TD: Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001; 25: 402-408. (Pubitemid 34164012)
17. Nariyama M, Shimizu K, Uematsu T, Maeda T: Identification of chromosomes associated with dental caries susceptibility using quantitative trait locus analysis in mice. Caries Res 2004; 38: 79-84. (Pubitemid 38223717)
18. Nyholt DR: A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other. Am J Hum Genet 2004; 74: 765-769. (Pubitemid 38420107)
19. Ørom UA, Shiekhattar R: Long non-coding RNAs and enhancers. Curr Opin Genet Dev 2011; 21: 194-198.
20. Patir A, Seymen F, Yildirim M, Deeley K, Cooper ME, Marazita ML, Vieira AR: Enamel formation genes are associated with high caries experience in Turkish children. Caries Res 2008; 42: 394-400.
21. Powell LV: Caries prediction: a review of the literature. Community Dent Oral Epidemiol 1998; 26: 361-371. (Pubitemid 128543219)
22. Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC: PLINK: a toolset for whole-genome association and population- based linkage analysis. Am J Hum Genet 2007; 81: 559-575.
23. Rothman PB: The transcriptional regulator NFIL3 controls IgE production. Trans Am Clin Climatol Assoc 2010; 121: 1156-171.
24. Sha WC, Liou HC, Tuomanen EI, Baltimore D: Targeted disruption of the p50 subunit of NFkappa B leads to multifocal defects in immune responses. Cell 1995; 80: 321-330.
25. Suzuki N, Kurihara Y: Dental caries susceptibility in mice is closely linked to the H-2 region on chromosome 17. Caries Res 1998; 32: 262-265. (Pubitemid 128527566)
26. Tannure PN, Küchler EC, Lips A, Costa MC, Luiz RR, Granjeiro JM, Vieira AR: Genetic variation in MMP20 contributes to higher caries experience. J Dent 2012; 40: 381-386.
27. Vieira AR, Marazita ML, Goldstein-McHenry T: Genome-wide scan finds suggestive caries loci. J Dent Res 2008; 87: 435-439.
28. Wang X, Shaffer JR, Weyant RJ, Cuenco KT, De- Sensi RS, Crout R, McNeil DW, Marazita ML: Genes and their effects on dental caries may differ between primary and permanent dentitions. Caries Res 2010; 44: 277-284.
29. Werneck RI, Lázaro FP, Cobat A, Grant AV, Xavier MB, Abel L, Alcaïs A, Trevilatto PC, Mira MT: A major gene effect controls resistance to caries. J Dent Res 2011; 90: 735-739.
30. World Health Organization: The world oral health report 2003, 2003.