A framework for analysis of metagenomic sequencing data

Pacific Symposium on Biocomputing 2011, PSB 2011

Volumn , Issue , 2011, Pages 131-141

  Murat Eren, A ^a   Ferris, Michael J ^b   Taylor, Christopher M ^a  

^a USA   (United States)

^b LOUISIANA STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA; 16S RRNA SEQUENCES; HEALTHY INDIVIDUALS; HIGH THROUGHPUT; HUMAN BODIES; INFORMATIVE GENES; METAGENOMIC ANALYSIS; MICROBIAL CELLS; MICROBIAL COMMUNITIES; MICROBIAL SPECIES; MICROBIOTAS; NATURAL ENVIRONMENTS; ORDERS OF MAGNITUDE; PYROSEQUENCING; REDUCING COSTS; RELATIVE ABUNDANCE; RESPIRATORY DISORDERS; SEQUENCE ANALYSIS; SEQUENCE DATA; VISUALIZATION AND ANALYSIS;

COMPUTER PROGRAMMING; DATA VISUALIZATION; GENETIC ENGINEERING; RNA;

FACTOR ANALYSIS;

BACTERIAL RNA; RNA 16S;

ARTICLE; BACTERIUM; BIOLOGY; CLASSIFICATION; COMPUTER PROGRAM; FEMALE; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; METAGENOME; METAGENOMICS; MICROBIOLOGY; NECROTIZING ENTEROCOLITIS; PHYLOGENY; STATISTICAL ANALYSIS; STATISTICS; VAGINITIS;

BACTERIA; COMPUTATIONAL BIOLOGY; DATA INTERPRETATION, STATISTICAL; ENTEROCOLITIS, NECROTIZING; FEMALE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; METAGENOME; METAGENOMICS; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SOFTWARE; VAGINOSIS, BACTERIAL;

EID: 84872975469     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (11)

1. D. A. Sandoval, R. J. Steeley, Science 328(5975):179-80 (2010).
2. Y. Wang, J. D. Hoenig, K. J. Malin, S. Qamar, E. O. Petrof, J. Sun, et al, ISME J., doi:10.1038/ismej.2009.37 (2009).
3. W. B. Withman, D. C. Coleman, W. J. Wiebe, Proc. Natl. Acad. Sci. USA 95, 6578-6583 (1998).
4. NIH HMP Working Group, J. Peterson, S. Garges, M. Giovanni, P. McInnes, L. Wang, et al, Genome Res. 19(12):2317-23 (2009).
5. G. J. Olsen, C. R. Woese, FASEB J., 7:113-123 (1993).
6. C. Shyu, T. Soule, S. J. Bent, J. A. Foster, L. J. Forney, Microb. Ecol. 53f4, 562 (2007).
7. J. R. Cole, Q. Wang, E. Cardenas, J. Fish, B. Chai, R. J. Farris, et al, Nucleic Acids Res. D, 141 (2009
8. P. D. Schloss, S. L. Westcott, T. Ryabin, J. R. Hall, M. Hartmann, E. B. Hollister, et al, Appl. Environ. Microbiol. 75(23):7537-41 (2009).
9. J. G. Caporaso, J. N. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K. Costello, et al, Nature Methods doi:10.1038/nmeth.f.303 (2010).
10. Q. Wang, G.M. Garrity, J.M. Tiedje, J.R. Cole, Appl Environ Microbiol., 73(16):5261-7 (2007).
11. M. Hamady, C. Lozupone, R. Knight, ISME J., doi:10.1038/ismej.2009.97 (2009).