Closed-loop, multichannel experimentation using the open-source NeuroRighter electrophysiology platform

Frontiers in Neural Circuits

Volumn , Issue JAN, 2013, Pages

  Newman, Jonathan P ^a   Zeller Townson, Riley ^a   Fong, Ming Fai ^a   Desai, Sharanya Arcot ^a   Gross, Robert E ^a   Potter, Steve M ^a  

^a EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Closed loop; Electrophysiology; Micro electrode array; Multi electrode; Multichannel; Network; Open source; Real time

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BRAIN ELECTROPHYSIOLOGY; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; COST BENEFIT ANALYSIS; DIGITAL FILTERING; EPILEPSY; EQUIPMENT DESIGN; HIPPOCAMPAL CA1 REGION; HIPPOCAMPAL CA3 REGION; LATENT PERIOD; MULTICHANNEL RECORDER; NERVE CELL NETWORK; NEUROFEEDBACK; NEUROSCIENCE; NONHUMAN; ONLINE SYSTEM; PROCESS DEVELOPMENT; RAT; REACTION TIME; ROBOTICS; SPIKE WAVE; STIMULATION; SYNAPTIC TRANSMISSION;

EID: 84872916198     PISSN: 16625110     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (51)

1. Ahrens, M. B., Li, J. M., Orger, M. B., Robson, D. N., Schier, A. F., Engert, F., et al. (2012). Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature 485, 471-477.
2. Arsiero, M., Luscher, H. R., and Giugliano, M. (2007). Real-time closed-loop electrophysiology: towards new frontiers in in vitro investigations in the neurosciences. Arch. Ital. Biol. 145, 193-209.
3. Azin, M., and Guggenmos, D. J. (2011). A battery-powered activity-dependent intracortical microstimulation IC for brain-machine-brain interface. IEEE J. Solid-State Circuits 46, 731-745.
4. Bakkum, D. J., Gamblen, P. M., Ben-Ary, G., Chao, Z. C., and Potter, S. M. (2007). MEART: The Semi-Living Artist. Front. Neuro-rob. 1:5. doi:10.3389/neuro.12.005. 2007
5. Cole, K. S. (1949). Dynamic electrical characteristics of the squid axon membrane. Annu. Rev. Physiol. 3, 253-258.
6. DeMarse, T. B., Wagenaar, D. A., Blau, A. W., and Potter, S. M. (2001). The neurally controlled animat: biological brains acting with simulated bodies. Auton. Robots 11, 305-310.
7. Desai, S. A., Rolston, J. D., Guo, L., and Potter, S. M. (2010). Improving impedance of implantable microwire multi-electrode arrays by ultrasonic electroplating of durable platinum black. Front. Neuroeng. 3:5. doi:10.3389/fneng.2010.00005
8. Du, J., Blanche, T. J., Harrison, R. R., Lester, H., and Masmani-dis, S. C. (2011). Multiplexed, high density electrophysiology with nanofabricated neural probes. PLoS ONE 6:e26204. doi:10.1371/journal.pone.0026204
9. Esteller, R., Echauz, J., and Tcheng, T. (2001). Line length: an efficient feature for seizure onset detection. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2,1707-1710.
10. Fiscella, M., Farrow, K., Jones, I. L., Jackel, D., Muller, J., Frey, U., et al. (2012). Recording from defined populations of retinal ganglion cells using a high-density CMOS-integratedmicroelectrode arraywith real-time switchable electrode selection. J. Neurosci. Methods 211, 103-113.
11. Gal, A., Eytan, D., Wallach, A., Sandler, M., Schiller, J., and Marom, S. (2010). Dynamics of excitability over extended timescales in cultured cortical neurons. J. Neurosci. 30, 16332-16342.
12. Hamill, O. P., Marty, A., Neher, E., and Sakmann, B. (1981). Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches. Pflugers Arch. 391, 85-100.
13. Harvey, C. D., Collman, F., Dombeck, D. A., and Tank, D. W. (2009). Intracellular dynamics of hippocampal place cells during virtual navigation. Nature 461, 941-946.
14. Hawkins, C. A., and Mellanby, J. H. (1987). Limbic epilepsy induced by tetanus toxin: A longitudinal elec-troencephalographic study. Epilepsia 28,431-444.
15. Horn, B. K. P., and Schunck, B. G. (1981). Determining optical flow. Artif. Intell. 17, 185-203.
16. Jackson, A., Mavoori, J., and Fetz, E. E. (2006a). Long-term motor cortex plasticity induced by an electronic neural implant. Nature 444, 56-60.
17. Jackson, A., Moritz, C. T., Mavoori, J., Lucas, T. H., and Fetz, E. E. (2006b). The Neurochip BCI: towards a neural prosthesis for upper limb function. IEEE Trans. Neural Syst. Rehabil. Eng. 14, 187-190.
18. Kispersky, T. J., Economo, M. N., Rande-ria, P., and White, J. A. (2011). Gen-Net: a platform for hybrid network experiments. Front. Neuroinform. 5:11. doi:10.3389/fninf.2011.00011
19. Litt, B., andEchauz, J. (2002). Prediction of epileptic seizures. Lancet Neurol. 1, 22-30.
20. Marmont, G. (1949). Studies on the axonmembrane. J. Cell. Comp. Physiol. 34, 351-381.
21. Minerbi, A., Kahana, R., Goldfeld, L., Kaufman, M., Marom, S., and Ziv, N. E. (2009). Long-term relationships between synaptic tenacity, synaptic remodeling, and network activity. PLoS Biol. 7:e1000136. doi:10.1371/journal.pbio.1000136
22. Mormann, F., Andrzejak, R. G., Elger, C. E., and Lehnertz, K. (2007). Seizure prediction: the long and winding road. Brain 130, 314-333.
23. Morrell, M. J. (2011). Responsive cortical stimulation for the treatment of medicallyintractable partial epilepsy. Neurology 77, 1295-1304.
24. Nakanishi, K., and Kukita, F. (1998). Functional synapses in synchronized bursting of neocortical neurons in culture. Brain Res. 795, 137-146.
25. Nelson, T. S., Suhr, C. L., Freestone, D. R., Lai, A., Halliday, A. J., Mclean, K. J., et al. (2011). Closed-loop seizure control with very high frequency electrical stimulation at seizure onset in the Gaers model of absence epilepsy. Int. J. Neural Syst. 21, 163.
26. Potter, S. M., and DeMarse, T. B. (2001). A new approach to neural cell culture for long-term studies. J. Neu-rosci. Methods 110, 17-24.
27. Prinz, A. A., Abbott, L. F., and Marder, E. (2004). The dynamic clamp comes of age. Trends Neurosci. 27, 218-224.
28. Reger, B. D., Fleming, K. M., Sanguineti, V., and Alford, S. (2000). Connecting brains to robots: an artificial bodyfor studying the computational properties of neural tissues. Artif. Life 324, 307-324.
29. Rich, M. M., and Wenner, P. (2007). Sensing and expressing homeostatic synaptic plasticity. Trends Neurosci. 30, 119-125.
30. Robinson, J. T., Jorgolli, M., Shalek, A. K., Yoon, M.-H., Gertner, R. S., and Park, H. (2012). Vertical nanowire electrode arrays as a scalable platform for intracellular interfacing to neuronal circuits. Nat. Nanotechnol. 7, 180-184.
31. Rolston, J. D., Gross, R. E., and Potter, S. M. (2009a). A low-cost multielectrode system for data acquisition enabling realtime closed-loop processing with rapid recovery from stimulation artifacts. Front. Neuroeng. 2:12. doi:10.3389/neuro.16.012.2009
32. Rolston, J. D., Gross, R. E., and Potter, S. M. (2009b). Common median referencing for improved action potential detection with multielectrode arrays. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2009, 1604-1607.
33. Rolston, J. D., Gross, R. E., and Potter, S. M. (2010). Closed-loop, open-source electrophysiol ogy. Front. Neurosci. 4:31. doi:10.3389/fnins.2010.00031
34. Rosin, B., Slovik, M., Mitelman, R., Rivlin-Etzion, M., Haber, S. N., Israel, Z., et al. (2011). Closed-loop deep brain stimulation is superior in ameliorating parkinsonism. Neuron 72, 370-384.
35. Stirman, J. N., Crane, M. M., Hus-son, S. J., Wabnig, S., Schultheis, C., Gottschalk, A., et al. (2011). Realtime multimodal optical control of neurons and muscles in freelybehav-ing Caenorhabditis elegans. Nat. Methods 8, 153-158.
36. Strong, S. P., Koberle, R., de Ruyter Van Stevenvick, R. R., and Bialek, W. (1998). Entropy and information in neural spike trains. Phys. Rev. Lett. 80, 197-200.
37. Sun, F. T., Morrell, M. J., andWharen, R. E. (2008). Responsive cortical stimulation for the treatment of epilepsy. Neurotherapeutics 5, 68-74.
38. Super, H., and Roelfsema, P. R. (2005). Chronic multiunit recordings in behaving animals: advantages and limitations. Prog. Brain Res. 147, 263-282.
39. Tchumatchenko, T., Geisel, T., Volgu-shev, M., and Wolf, F. (2010). Signatures of synchrony in pairwise count correlations. Front. Comput. Neurosci. 4:1. doi:10.3389/neuro.10.001.2010
40. Turrigiano, G. (2011). Too many cooks? Intrinsic and synaptic homeostatic mechanisms in cortical circuit refinement. Annu. Rev. Neurosci. 34, 89-103.
41. Turrigiano, G. G., Leslie, K. R., Desai, N. S., Rutherford, L. C., and Nel-son, S. B. (1998). Activity-dependent scaling of quantal amplitude in neocortical neurons. Nature 391, 892-896.
42. Wagenaar, D. A., Madhavan, R., Pine, J., and Potter, S. M. (2005). Controlling bursting in cortical cultures with closed-loop multi-electrode stimulation. J. Neurosci. 25, 680-688.
43. Wagenaar, D. A., Pine, J., and Potter, S. M. (2004). Effective parameters for stimulation of dissociated cultures using multi-electrode arrays. J. Neurosci. Methods 138, 27-37.
44. Wagenaar, D. A., Pine, J., and Potter, S. M. (2006a). An extremely rich repertoire of bursting patterns during the development of cortical cultures. BMC Neurosci. 7:11. doi:10.1186/1471-2202-7-11
45. Wagenaar, D., DeMarse, T. B., and Potter, S. M. (2006b). "MEABench: a toolset for multi-electrode data acquisition and on-line analysis" in International IEEE EMBS Conference on Neural Engineering, Washington, 518-521.
46. Wagenaar, D. A., and Potter, S. M. (2002). Real-time multi-channel stimulus artifact suppression by local curve fitting. J. Neurosci. Methods 120, 113-120.
47. Wagenaar, D. A., and Potter, S. M. (2004). A versatile all-channel stimulator for electrode arrays, with real-time control. J. Neural. Eng. 1, 39-45.
48. Wallach, A., Eytan, D., Gal, A., Zrenner, C., and Marom, S. (2011). Neuronal response clamp. Front. Neuroeng. 4:3. doi:10.3389/fneng.2011.00003
49. Yu, Y., Crumiller, M., Knight, B., and Kaplan, E. (2010). Estimating the amount of information carried by a neuronal population. Front. Comput. Neurosci. 4:10. doi:10.3389/fncom.2010.00010
50. Zanos, S., Richardson, A. G., Shupe, L., Miles, F. P., and Fetz, E. E. (2011). The Neurochip-2: an autonomous head-fixed computer for recording and stimulating in freely behaving monkeys. IEEE Trans. Neural Syst. Rehabil. Eng. 19, 427-435.
51. Zeller-Townson, R., Ben-Ary, G., and Gamblen, P. (2011). "Silent barrage: interactive neurobiological art" in The Proceedings ofthe 8thACM Conference on Creativity and Cognition, Atlanta, 407-408.