메뉴 건너뛰기




Volumn 22, Issue 1, 2013, Pages 19-21

Next-generation phylogenetics takes root

Author keywords

[No Author keywords available]

Indexed keywords

AMBYSTOMA; ANIMAL; DNA SEQUENCE; GENETICS; METHODOLOGY; PHYLOGENY; PHYLOGEOGRAPHY; REVIEW;

EID: 84872873481     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12050     Document Type: Review
Times cited : (22)

References (19)
  • 1
    • 80053019891 scopus 로고    scopus 로고
    • Haplotype phasing: Existing methods and new developments
    • Browning SR, Browning BL, (2011) Haplotype phasing: existing methods and new developments. Nature Reviews Genetics, 12, 703-714.
    • (2011) Nature Reviews Genetics , vol.12 , pp. 703-714
    • Browning, S.R.1    Browning, B.L.2
  • 2
    • 84864697376 scopus 로고    scopus 로고
    • Inferring species trees directly from biallelic genetic markers: Bypassing gene trees in a full coalescent analysis
    • Bryant D, Bouckaert R, Felsenstein J, Rosenberg N, RoyChoudry A, (2012) Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis. Molecular Biology and Evolution, 29, 1917-1932.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 1917-1932
    • Bryant, D.1    Bouckaert, R.2    Felsenstein, J.3    Rosenberg, N.4    Roychoudry, A.5
  • 6
    • 79959300621 scopus 로고    scopus 로고
    • Applications of next generation sequencing in molecular ecology of non-model organisms
    • Ekblom R, Galindo J, (2010) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity, 107, 1-15.
    • (2010) Heredity , vol.107 , pp. 1-15
    • Ekblom, R.1    Galindo, J.2
  • 7
    • 84865046802 scopus 로고    scopus 로고
    • Not all sequence tags are created equal: Designing and validating sequence identification tags robust to indels
    • Faircloth BC, Glenn TC, (2012) Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels. PLoS One, 7, e42543.
    • (2012) PLoS One , vol.7
    • Faircloth, B.C.1    Glenn, T.C.2
  • 8
    • 84859548731 scopus 로고    scopus 로고
    • Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales
    • Faircloth BC, McCormack JE, Crawford NG, Harvey MG, Brumfield RT, Glenn TC, (2012) Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales. Systematic Biology, 61, 717-726.
    • (2012) Systematic Biology , vol.61 , pp. 717-726
    • Faircloth, B.C.1    McCormack, J.E.2    Crawford, N.G.3    Harvey, M.G.4    Brumfield, R.T.5    Glenn, T.C.6
  • 9
    • 59849113821 scopus 로고    scopus 로고
    • Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
    • Gnirke A, Melnikov A, Maguire J, et al,. (2009) Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nature Biotechnology, 27, 182-189.
    • (2009) Nature Biotechnology , vol.27 , pp. 182-189
    • Gnirke, A.1    Melnikov, A.2    Maguire, J.3
  • 10
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • Hillis D, Huelsenbeck J, (1992) Signal, noise, and reliability in molecular phylogenetic analyses. Journal of Heredity, 83, 189-195. (Pubitemid 23097535)
    • (1992) Journal of Heredity , vol.83 , Issue.3 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 11
    • 79959221246 scopus 로고    scopus 로고
    • PRGmatic: An efficient pipeline for collating genome-enriched second-generation sequencing data using a "provisional-reference genome"
    • Hird SM, Brumfield RT, Carstens BC, (2011) PRGmatic: an efficient pipeline for collating genome-enriched second-generation sequencing data using a "provisional-reference genome". Molecular Ecology Resources, 11, 743-748.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 743-748
    • Hird, S.M.1    Brumfield, R.T.2    Carstens, B.C.3
  • 12
    • 77449121614 scopus 로고    scopus 로고
    • Target-enrichment strategies for next-generation sequencing
    • Mamanova L, Coffey AJ, Scott CE, et al,. (2009) Target-enrichment strategies for next-generation sequencing. Nature Methods, 7, 111-118.
    • (2009) Nature Methods , vol.7 , pp. 111-118
    • Mamanova, L.1    Coffey, A.J.2    Scott, C.E.3
  • 13
    • 84873084821 scopus 로고    scopus 로고
    • Applications of next-generation sequencing to phylogeography and phylogenetics
    • Advance Online Access. doi: 10.1016/j.ympev.2011.12.007
    • McCormack J, Hird S, Zellmer A, Carstens B, Brumfield R, (2012a) Applications of next-generation sequencing to phylogeography and phylogenetics. Molecular Phylogenetics & Evolution. Advance Online Access. doi: 10.1016/j.ympev.2011.12.007.
    • (2012) Molecular Phylogenetics & Evolution
    • McCormack, J.1    Hird, S.2    Zellmer, A.3    Carstens, B.4    Brumfield, R.5
  • 14
    • 84859530730 scopus 로고    scopus 로고
    • Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
    • McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC, (2012b) Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis. Genome Research, 22, 746-754.
    • (2012) Genome Research , vol.22 , pp. 746-754
    • McCormack, J.E.1    Faircloth, B.C.2    Crawford, N.G.3    Gowaty, P.A.4    Brumfield, R.T.5    Glenn, T.C.6
  • 15
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E, et al,. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297-1303.
    • (2010) Genome Research , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3
  • 16
    • 77956285690 scopus 로고    scopus 로고
    • Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
    • 2010, pdb.prot5448, doi: 10.1101/pdb.prot5448
    • Meyer M, Kircher M, (2010) Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing. Cold Spring Harb Protoc, 2010, pdb.prot5448, doi: 10.1101/pdb.prot5448.
    • (2010) Cold Spring Harb Protoc
    • Meyer, M.1    Kircher, M.2
  • 18
    • 39449089394 scopus 로고    scopus 로고
    • Parallel tagged sequencing on the 454 platform
    • DOI 10.1038/nprot.2007.520, PII NPROT.2007.520
    • Meyer M, Stenzel U, Hofreiter M, (2008) Parallel tagged sequencing on the 454 platform. Nature Protocols, 3, 267-278. (Pubitemid 351266511)
    • (2008) Nature Protocols , vol.3 , Issue.2 , pp. 267-278
    • Meyer, M.1    Stenzel, U.2    Hofreiter, M.3
  • 19
    • 84872864542 scopus 로고    scopus 로고
    • Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex
    • O'Neill EM, Schwartz R, Bullock CT, et al,. (2013) Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex. Molecular Ecology, 22, 111-129.
    • (2013) Molecular Ecology , vol.22 , pp. 111-129
    • O'Neill, E.M.1    Schwartz, R.2    Bullock, C.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.