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Volumn , Issue , 2012, Pages 552-558

Open source workflow systems in life sciences informatics

Author keywords

in silico experiment; scientific workflow; scientific workflow management system

Indexed keywords

CLOUD PROCESSING; DATA INTEGRATION; DISTRIBUTED RESOURCES; IN-SILICO; INFORMATICS; LIFE-SCIENCES; MANAGEMENT SYSTEMS; OPEN SOURCES; PROGRAMMING TOOLS; RESEARCH TEAMS; SCIENTIFIC COLLABORATION; SCIENTIFIC FIELDS; SCIENTIFIC WORKFLOWS; UNIQUE FEATURES; USER FRIENDLINESS; WORK-FLOW SYSTEMS;

EID: 84872860420     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBE.2012.6399732     Document Type: Conference Paper
Times cited : (5)

References (33)
  • 1
    • 84872870236 scopus 로고    scopus 로고
    • [Online] Available: Accessed : May 01, 2012
    • "LESC - London e-Science Centre" [Online] Available: http://www.lesc.ic.ac.uk/admin/escience.html, [Accessed : May 01, 2012].
    • LESC - London e-Science Centre
  • 2
    • 45449099480 scopus 로고    scopus 로고
    • Scientific Workflow: A Survey and Research Directions
    • A. Barker and J. I. Van Hemert, "Scientific Workflow: A Survey and Research Directions," PPAM, vol. 4967, no. 5, pp. 746-753, 2007.
    • (2007) PPAM , vol.4967 , Issue.5 , pp. 746-753
    • Barker, A.1    Van Hemert, J.I.2
  • 4
    • 70349465259 scopus 로고    scopus 로고
    • Scientific Process Automation and Workflow Management
    • B. Ludäscher et al., "Scientific Process Automation and Workflow Management," Development, vol. 10, no. 3, pp. 476-508, 2009.
    • (2009) Development , vol.10 , Issue.3 , pp. 476-508
    • Ludäscher, B.1
  • 7
  • 9
    • 84879557098 scopus 로고    scopus 로고
    • KNIME: The Konstanz Information Miner
    • C. Preisach, H. Burkhardt, L. Schmidt-Thieme, and R. Decker, Eds. Springer Berlin Heidelberg
    • M. R. Berthold et al., "KNIME: The Konstanz Information Miner," in Data Analysis Machine Learning and Applications, C. Preisach, H. Burkhardt, L. Schmidt-Thieme, and R. Decker, Eds. Springer Berlin Heidelberg, 2008, pp. 319-326.
    • (2008) Data Analysis Machine Learning and Applications , pp. 319-326
    • Berthold, M.R.1
  • 10
    • 78651076564 scopus 로고    scopus 로고
    • KNIME - The Konstanz information miner: Version 2.0 and beyond
    • M. R. Berthold et al., "KNIME - the Konstanz information miner: version 2.0 and beyond," SIGKDD Explor Newsl, vol. 11, no. 1, pp. 26-31, 2009.
    • (2009) SIGKDD Explor Newsl , vol.11 , Issue.1 , pp. 26-31
    • Berthold, M.R.1
  • 11
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: A platform for interactive large-scale genome analysis
    • B. Giardine et al., "Galaxy: A platform for interactive large-scale genome analysis," Genome Research, vol. 15, no. 10, pp. 1451-1455, 2005.
    • (2005) Genome Research , vol.15 , Issue.10 , pp. 1451-1455
    • Giardine, B.1
  • 12
    • 75949108066 scopus 로고    scopus 로고
    • Galaxy: A web-based genome analysis tool for experimentalists
    • edited by Frederick M Ausubel et al, vol. Chapter 19, no. January, pp. Unit 19.10.1-21
    • D. Blankenberg et al., "Galaxy: a web-based genome analysis tool for experimentalists.," Current protocols in molecular biology edited by Frederick M Ausubel et al, vol. Chapter 19, no. January, pp. Unit 19.10.1-21, 2010.
    • (2010) Current Protocols in Molecular Biology
    • Blankenberg, D.1
  • 13
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • J. Goecks, A. Nekrutenko, and J. Taylor, "Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences," Genome Biology, vol. 11, no. 8, p. R86, 2010.
    • (2010) Genome Biology , vol.11 , Issue.8
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 15
    • 0344496794 scopus 로고    scopus 로고
    • The discovery net system for high throughput bioinformatics
    • no. 90001
    • A. Rowe, D. Kalaitzopoulos, M. Osmond, M. Ghanem, and Y. Guo, "The discovery net system for high throughput bioinformatics," Bioinformatics, vol. 19, no. 90001, p. 225i-231, 2003.
    • (2003) Bioinformatics , vol.19
    • Rowe, A.1    Kalaitzopoulos, D.2    Osmond, M.3    Ghanem, M.4    Guo, Y.5
  • 16
    • 84892221851 scopus 로고    scopus 로고
    • Sedna: A BPEL-Based Environment for Visual Scientific Workflow Modeling
    • I.J. Taylor, et al., Editors. Springer-Verlag
    • Wassermann, B., et al., Sedna: A BPEL-Based Environment for Visual Scientific Workflow Modeling, in Workflows for E-science: Scientific Workflows for Grids, I.J. Taylor, et al., Editors. 2007, Springer-Verlag. p. 428-449.
    • (2007) Workflows for E-science: Scientific Workflows for Grids , pp. 428-449
    • Wassermann, B.1
  • 18
    • 29644434815 scopus 로고    scopus 로고
    • Pegasus□: A framework for mapping complex scientific workflows onto distributed systems
    • E. Deelman, G. Singh, M.-hui Su, J. Blythe, Y. Gil, and C. Kesselman, "Pegasus□: A framework for mapping complex scientific workflows onto distributed systems," Jet Propulsion, vol. 13, pp. 219-237, 2005.
    • (2005) Jet Propulsion , vol.13 , pp. 219-237
    • Deelman, E.1    Singh, G.2    Su, M.-H.3    Blythe, J.4    Gil, Y.5    Kesselman, C.6
  • 21
    • 81255169821 scopus 로고    scopus 로고
    • Workflow Skeletons: Increasing Scalability of Scientific Workflows by Combining Orchestration and Choreography
    • T. Fleuren, J. Götze, and P. Müller, "Workflow Skeletons: Increasing Scalability of Scientific Workflows by Combining Orchestration and Choreography," 2011 IEEE Ninth European Conference on Web Services, pp. 99-106, 2011.
    • (2011) 2011 IEEE Ninth European Conference on Web Services , pp. 99-106
    • Fleuren, T.1    Götze, J.2    Müller, P.3
  • 22
    • 84873689950 scopus 로고    scopus 로고
    • Conventional Simulation Workflow Technology for Scientific Conventional Workflow Technology for Scientific Simulation
    • K. Görlach, M. Sonntag, D. Karastoyanova, F. Leymann, and M. Reiter, "Conventional Simulation Workflow Technology for Scientific Conventional Workflow Technology for Scientific Simulation," Guide to eScience, pp. 0-31, 2011.
    • (2011) Guide to eScience , pp. 0-31
    • Görlach, K.1    Sonntag, M.2    Karastoyanova, D.3    Leymann, F.4    Reiter, M.5
  • 23
    • 62749139603 scopus 로고    scopus 로고
    • MyExperiment: Defining the Social Virtual Research Environment
    • vol. 0, no. July
    • D. D. Roure et al., "myExperiment: Defining the Social Virtual Research Environment," 2008 IEEE Fourth International Conference on eScience, vol. 0, no. July, pp. 182-189, 2008.
    • (2008) 2008 IEEE Fourth International Conference on EScience , pp. 182-189
    • Roure, D.D.1
  • 25
    • 70349466563 scopus 로고    scopus 로고
    • Scientific Workflows: Business as Usual?
    • Springer
    • B. Ludäscher, M. Weske, T. McPhillips, and S. Bowers, "Scientific Workflows: Business as Usual?," BPM, vol. 5701. Springer, pp. 31-47, 2009.
    • (2009) BPM , vol.5701 , pp. 31-47
    • Ludäscher, B.1    Weske, M.2    McPhillips, T.3    Bowers, S.4
  • 26
    • 59849095285 scopus 로고    scopus 로고
    • Workflows and e-Science: An overview of workflow system features and capabilities
    • May
    • E. Deelman, D. Gannon, M. Shields, and I. Taylor, "Workflows and e-Science: An overview of workflow system features and capabilities," Future Generation Computer Systems, vol. 25, no. 5, pp. 528-540, May 2009.
    • (2009) Future Generation Computer Systems , vol.25 , Issue.5 , pp. 528-540
    • Deelman, E.1    Gannon, D.2    Shields, M.3    Taylor, I.4
  • 27
    • 84947249033 scopus 로고    scopus 로고
    • Distributed P2P Computing within Triana: A Galaxy Visualization Test Case
    • I. Taylor, M. Shields, I. Wang, and R. Philp, "Distributed P2P Computing within Triana: A Galaxy Visualization Test Case," in IPDPS 2003 Conference, 2003, p. 16.1.
    • (2003) IPDPS 2003 Conference
    • Taylor, I.1    Shields, M.2    Wang, I.3    Philp, R.4
  • 29
    • 51749124906 scopus 로고    scopus 로고
    • Trident: Scientific Workflow Workbench for Oceanography
    • Jul.
    • R. S. Barga et al., "Trident: Scientific Workflow Workbench for Oceanography," 2008 IEEE Congress on Services - Part I, pp. 465-466, Jul. 2008.
    • (2008) 2008 IEEE Congress on Services - Part I , pp. 465-466
    • Barga, R.S.1
  • 30
    • 84920281252 scopus 로고    scopus 로고
    • [Online]. Available: Accessed: 1-Jul-2012
    • "KNIME | Konstanz Information Miner." [Online]. Available: http://www.knime.org/. [Accessed: 1-Jul-2012].
    • KNIME | Konstanz Information Miner
  • 31
    • 84872858163 scopus 로고    scopus 로고
    • [Online]. Available: Accessed: 1-Jul-2012
    • "Galaxy Wiki" [Online]. Available: http://wiki.g2.bx.psu.edu/. [Accessed: 1-Jul-2012].
    • Galaxy Wiki
  • 33
    • 84872849156 scopus 로고    scopus 로고
    • [Online]. Available: Accessed: 1-Jul-2012
    • "GRANATUM - Project Vision." [Online]. Available: http://granatum.org/. [Accessed: 1-Jul-2012].
    • GRANATUM - Project Vision


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.