Epigenetic aspects of HP1 exchange kinetics in apoptotic chromatin

Biochimie

Volumn 95, Issue 2, 2013, Pages 167-179

  Legartová, Soňa ^a   Jugová, Alžběta ^a   Stixová, Lenka ^a   Kozubek, Stanislav ^a   Fojtová, Miloslava ^a   Zdráhal, Zbyněk ^b   Lochmanová, Gabriela ^b   Bártová, Eva ^a  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

^b MASARYK UNIVERSITY   (Czech Republic)

Author keywords

Apoptosis; Chromatin; Epigenetics; Histones; HP1

Indexed keywords

ETOPOSIDE; HETEROCHROMATIN PROTEIN 1; HISTONE H2B; PROTEIN BCL 2; PROTEIN P53;

ANIMAL CELL; APOPTOSIS; ARTICLE; BLEACHING; CELL FUNCTION; CHROMATIN; CHROMATIN CONDENSATION; CHROMATIN STRUCTURE; CONTROLLED STUDY; EPIGENETICS; FIBROBLAST; GENETIC TRANSFECTION; HISTONE ACETYLATION; HUMAN; HUMAN CELL; KINETICS; LEUKEMIA CELL; MASS SPECTROMETRY; MOUSE; MYELOMA CELL; NONHUMAN; PHENOTYPE; PROTEIN ANALYSIS; PROTEIN FUNCTION; WESTERN BLOTTING;

ACETYLATION; ANIMALS; ANTINEOPLASTIC AGENTS, PHYTOGENIC; APOPTOSIS; CELL ADHESION; CELL LINE, TUMOR; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; EPIGENESIS, GENETIC; ETOPOSIDE; FIBROBLASTS; HISTONES; HUMANS; KINETICS; METHYLATION; MICE; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTO-ONCOGENE PROTEINS C-BCL-2; RECOMBINANT FUSION PROTEINS; SIGNAL TRANSDUCTION; TUMOR SUPPRESSOR PROTEIN P53;

EID: 84872773351     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2012.09.027     Document Type: Article

References (24)

1. A.H. Wyllie, J.F. Kerr, and A.R. Curie Cell death: the significance of apoptosis Int. Rev. Cytol. 68 1980 251 306
2. G.M. Cohen, X.M. Sun, H. Fearnhead, M. MacFarlane, D.G. Brown, R.T. Snowden, and D. Dinsdale Formation of large molecular weight fragments of DNA is a key committed step of apoptosis in thymocytes J. Immunol. 153 1994 507 516
3. S.J. Martin, D.R. Green, and T.G. Cotter Dicing with death: dissecting the components of the apoptosis machinery Trends Biochem. Sci. 19 1994 26 30
4. M.O. Hengartner Apoptosis. DNA destroyers Nature 412 2001 27 29
5. K. Ajiro Histone H2B phosphorylation in mammalian apoptotic cells. An association with DNA fragmentation J. Biol. Chem. 275 2000 439 443
6. E.P. Rogakou, W. Nieves-Neira, C. Boon, Y. Pommier, and W.M. Bonner Initiation of DNA fragmentation during apoptosis induces phosphorylation of H2AX histone at serine 139 J. Biol. Chem. 275 2000 9390 9395
7. P. Waring, T. Khan, and A. Sjaarda Apoptosis induced by gliotoxin is preceded by phosphorylation of histone H3 and enhanced sensitivity of chromatin to nuclease digestion J. Biol. Chem. 272 1997 17929 17936
8. M. Wu, L.G. Xu, X. Li, Z. Zhai, and H.B. Shu AMID, an apoptosis-inducing factor-homologous mitochondrion-associated protein, induces caspase-independent apoptosis J. Biol. Chem. 277 2002 25617 25623
9. P.J. Hurd, A.J. Bannister, K. Halls, M.A. Dawson, M. Vermeulen, J.V. Olsen, H. Ismail, J. Somers, M. Mann, T. Owen-Hughes, I. Gout, and T. Kouzarides Phosphorylation of histone H3 Thr-45 is linked to apoptosis J. Biol. Chem. 284 2009 16575 16583
10. T. Cheutin, A.J. McNairn, T. Jenuwein, D.M. Gilbert, P.B. Singh, and T. Misteli Maintenance of stable heterochromatin domains by dynamic HP1 binding Science 299 2003 721 725
11. A. Jugová, G. Šustáčková, S. Legartová, L. Stixová, S. Kozubek, and E. Bártová Effects of epigenetic-based anti-cancer drugs in leukaemia and multiple myeloma cells Cell Biol. Int. 35 2011 1195 1203
12. E. Bártová, J. Pacherník, A. Harnič arová, A. Kovařík, M. Kovaříková, J. Hofmanová, M. Skalníková, M. Kozubek, and S. Kozubek Nuclear levels and patterns of histone H3 modification and HP1 proteins after inhibition of histone deacetylases J. Cell Sci. 118 2005 5035 5046
13. L. Stixová, E. Bártová, P. Matula, O. Daněk, S. Legartová, and S. Kozubek Heterogeneity in the kinetics of nuclear proteins and trajectories of substructures associated with heterochromatin Epigenet. Chromatin 4 2011 5
14. E. Bártová, L. Stixová, G. Galiová, A. Harničarová Horáková, S. Legartová, and S. Kozubek Mutant genetic background affects the functional rearrangement and kinetic properties of JMJD2b histone demethylase J. Mol. Biol. 405 2011 679 695
15. D. Bonenfant, H. Towbin, M. Coulot, P. Schindler, D.R. Mueller, and J. van Oostrum Analysis of dynamic changes in post-translational modifications of human histones during cell cycle by mass spectrometry Mol. Cell. Proteomics 6 2007 1917 1932
16. L. Činčárová, G. Lochmanová, K. Nováková, P. Šultesová, H. Konečná, L. Fajkusová, J. Fajkus, and Z. Zdráhal A combined approach for the study of histone deacetylase inhibitors Mol Biosyst. 8 2012 2937 2945
17. R. Paro, H. Strutt, and G. Cavalli Heritable chromatin states induced by the Polycomb and trithorax group genes Novartis Found. Symp. 214 1998 51 61
18. B.D. Fodor, S. Kubicek, M. Yonezawa, R.J. O'Sullivan, R. Sengupta, L. Perez-Burgos, S. Opravil, K. Mechtler, G. Schotta, and T. Jenuwein Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells Genes Dev. 20 2006 1557 1562
19. A. Harničarová Horáková, G. Galiová, S. Legartová, S. Kozubek, P. Matula, and E. Bártová Chromocentre integrity and epigenetic marks J. Struct. Biol. 169 2010 124 133
20. E. Bártová, P. Jirsová, M. Fojtová, K. Souček, and S. Kozubek Chromosomal territory segmentation in apoptotic cells Cell. Mol. Life Sci. 60 2003 979 990
21. M. Boix-Chornet, M.F. Fraga, A. Villar-Garea, R. Caballero, J. Espada, A. Nunez, J. Casado, C. Largo, J.I. Casal, J.C. Cigudosa, L. Franco, M. Esteller, and E. Ballestar Release of hypoacetylated and trimethylated histone H4 is an epigenetic marker of early apoptosis J. Biol. Chem. 281 2006 13540 13547
22. M.F. Cheng, C.H. Lee, K.T. Hsia, G.S. Huang, and H.S. Lee Methylation of histone H3 lysine 27 associated with apoptosis in osteosarcoma cells induced by staurosporine Histol. Histopathol. 24 2009 1105 1111
23. R. Festenstein, S.N. Pagakis, K. Hiragami, D. Lyon, A. Verreault, B. Sekkali, and D. Kioussis Modulation of heterochromatin protein 1 dynamics in primary mammalian cells Science 299 2003 719 721
24. G. Šustáčková, S. Kozubek, L. Stixová, S. Legartová, P. Matula, D. Orlova, and E. Bártová Acetylation-dependent nuclear arrangement and recruitment of BMI1 protein to UV-damaged chromatin J. Cell. Physiol. 227 2012 1838 1850