Foresight project on global food and farming futures : Advances in plant disease and pest management

Journal of Agricultural Science

Volumn 149, Issue S1, 2011, Pages 91-114

  Lucas, J A ^a  

^a ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84872762017     PISSN: 00218596     EISSN: 14695146     Source Type: Journal    
DOI: 10.1017/S0021859610000997     Document Type: Article

References (137)

1. Adams I. P., Glover R. H., Monger W. A., Mumford R., Jackeviciene E., Samuitiene M. & Boonham N. (2009). Next-generation sequencing and metagenomic analysis; a universal diagnostic tool in plant virology. Molecular Plant Pathology 10, 537–545.
2. Alfano J. R. (2009). Roadmap for future research on plant pathogen effectors. Molecular Plant Pathology 10, 805–813.
3. Alfano J. R. & Collmer A. (2004). Type III secretion system effector proteins: double agents in bacterial disease and plant defence. Annual Review of Phytopathology 42, 385–414.
4. Altenbach D. & Robatzek S. (2007). Pattern recognition receptors: from the cell surface to intracellular dynamics. Molecular Plant–Microbe Interactions 20, 1031–1039.
5. Andersen M. R., Nielsen M. L. & Nielsen J. (2008). Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger. Molecular Systems Biology 4, 178. doi:10.1038/msb.2008.12.
6. Arocha Y., Zerfy T., Abebe G., Proud J., Hanson J., Wilson M., Jones P. & Lucas J. A. (2009). Identification of potential vectors and alternative plant hosts for the phytoplasma associated with Napier Grass Stunt Disease in Ethiopia. Journal of Phytopathology 157, 126–132.
7. Arraiano L. S., Balaam N., Fenwick P. M., Chapman C., Feuerhelm D., Howell P., Smith S. J., Widdowson J. P. & Brown J. K. M. (2009). Contributions of disease resistance and escape to the control of septoria tritici blotch of wheat. Plant Pathology 58, 910–922.
8. Atkinson H. J., Urwin P. E. & Mcpherson M. J. (2003). Engineering plants for nematode resistance. Annual Review of Phytopathology 41, 615–639.
9. Auer C. & Frederick R. (2009). Crop improvement using small RNAs: applications and predictive ecological risk assessments. Trends in Biotechnology 27, 644–651.
10. Barker I., Bokanga M., Lenne J., Otim-Nape W. & Spence N. (2006). Future Control of Infectious Diseases in Plants with Emphasis on Sub-Saharan Africa. Foresight Review D3.1. Infectious Diseases: Preparing for the Future. London: Department of Trade and Industry.
11. Baulcombe D. (2010). Reaping the benefits of crop research. Science 327, 761.
12. Beale M. H., Birkett M. A., Bruce T. J. A., Chamberlain K., Field L. M., Huttly A. K., Martin J. L., Parker R., Phillips A. L., Pickett J. A., Prosser I. M., Shewry P. R., Smart L. E., Wadhams L. J., Woodcock C. M. & Zhang Y. H. (2006). Aphid alarm pheromone produced by transgenic plants affects aphid and parasitoid behaviour. Proceedings of the National Academy of Sciences USA 103, 10509–10513.
13. Beddington J. (2010). Food security: contributions from science to a new and greener revolution. Philosophical Transactions of the Royal Society B 365, 61–71.
14. Belles X. (2010). Beyond Drosophila: RNAi in vivo and functional genomics in insects. Annual Review of Entomology 55, 111–128.
15. Berry P. M., Kindred D. R. & Paveley N. D. (2008). Quantifying the effects of fungicides and disease resistance on greenhouse gas emissions associated with wheat production. Plant Pathology 57, 1000–1008.
16. Bhullar N. K., Street K., Mackay M., Yahiaoui N. & Keller B. (2009). Unlocking wheat genetic resources for the molecular identification of previously undescribed functional alleles at the Pm3 resistance locus. Proceedings of the National Academy of Sciences USA 106, 9519–9524.
17. Bird D. M., Williamson V. M., Abad P., Mccarter J., Danchin E. G. J., Castagnone-Sereno P. & Opperman C. H. (2009). The genomes of root-knot nematodes. Annual Review of Phytopathology 47, 333–351.
18. Birkett M. A. & Pickett J. A. (2006). Interrogation of Signals/ Biomarkers. Foresight Project. State of Science Review S8. Infectious Diseases: Preparing for the Future. London: Department of Trade and Industry. Available online at: http://www.foresight.gov.uk (verified 7 October 2010).
19. Boonham N., Glover R., Tomlinson J. & Mumford R. (2008). Exploiting generic platform technologies for the detection and identification of plant pathogens. European Journal of Plant Pathology 121, 355–363.
20. Borges A. A., Borges-Pérez A. & Fernandez-Falcon M. (2004). Induced resistance to Fusarial wilt of banana by menadione sodium bisulphite treatments. Crop Protection 23, 1245–1247.
21. Borneman J. & Ole Becker J. (2007). Identifying micro-organisms involved in specific pathogen suppression in soil. Annual Review of Phytopathology 45, 153–172.
22. Botha A. M., Swanevelder Z. H. & Lapitan N. L. V. (2010). Transcript profiling of wheat genes expressed during feeding by two different biotypes of Diuraphis noxia. Environmental Entomology 39, 1206–1231.
23. Brasier C. M. (2008). The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathology 57, 792–808.
24. Brasier C. M., Denman S., Brown A. & Webber J. (2004 a). Sudden oak death (Phytophthora ramorum) discovered on trees in Europe. Mycological Research 108, 1108–1110.
25. Brasier C. M., Denman S., Rose J., Kirk S. A., Hughes K. J. D., Griffin R. L., Lane C. R., Inman A. J. & Webber J. F. (2004 b). First report of ramorum bleeding canker on Quercus falcata, caused by Phytophthora ramorum. Plant Pathology 53, 804.
26. Brown J. K. M. (2002). Yield penalties of disease resistance in crops. Current Opinion in Plant Biology 5, 339–344.
27. Bruce T. J. A., Hooper A. M., Ireland L., Jones O. T., Martin J. L., Smart L. E., Oakley J. & Wadhams L. J. (2007). Development of a pheromone trap monitoring system for orange wheat blossom midge, Sitodiplosis mosellana, in the UK. Pest Management Science 63, 49–56.
28. Carlson J. R. (2001). Functional expression of a Drosophila odor receptor. Proceedings of the National Academy of Sciences USA 98, 8936–8937.
29. Cohen Y. R. (2002). Beta-aminobutyric acid-induced resistance against plant pathogens. Plant Disease 86, 448–457.
30. Collinge D. B., Lund O. S. & Thordal-Christensen H. (2008). What are the prospects for genetically engineered, disease resistant plants? European Journal of Plant Pathology 121, 217–231.
31. Conrath U. (2009). Priming of induced plant defense responses. Advances in Botanical Research 51, 361–395.
32. Cook S. M., Khan Z. R. & Pickett J. A. (2007). The use of Push-Pull strategies in integrated pest management. Annual Review of Entomology 52, 375–400.
33. Cools H. J., Fraaije B. A., Kim S. H. & Lucas J. A. (2006). Impact of changes in the target P450 CYP51 enzyme associated with altered triazole sensitivity in fungal pathogens of cereal crops. Biochemical Society Transactions 34, 1219–1222.
34. Cools H. J., Parker J. E., Kelly D. E., Lucas J. A., Fraaije B. A. & Kelly S. L. (2010). Heterologous expression of mutated eburicol 14 alpha-demethylase (CYP51) proteins of Mycosphaerella graminicola to assess effects on azole fungicide sensitivity and intrinsic protein function. Applied and Environmental Microbiology 76, 2866–2872.
35. Copping L. G. (2009). The Manual of Biocontrol Agents. Alton, UK: British Crop Protection Council.
36. Copping L. G. & Menn J. J. (2000). Biopesticides: a review of their action, applications and efficacy. Pest Management Science 56, 651–676.
37. Crute I. R. (2003). Increased crop productivity from renewable inputs – a scientific challenge for the 21st century. In BCPC International Congress Crop Science and Technology. Proceedings of an International Congress held at the SECC, Glasgow, Scotland, UK, 10–12 November 2003, pp. 3–14. Alton, UK: BCPC.
38. Cuomo C. A., Geuldener U., Xu J. R., Trail F., Turgeon B. G., Di Pietro A., Walton J. D., Ma L. J., Baker S. E., Rep M., Adam G., Antoniw J., Baldwin T., Calvo S., Chang Y. L., Decaprio D., Galr L. R., Gnerre S., Goswami R. S., Hammond-Kosack K. E., Harris L. J., Hilburn K., Kennel J. C., Kroken S., Magnuson J. K., Mannhaupt G., Mauceli E., Mewes H. W., Mitterbauer R., Muehlbauer G., Munsterkotter M., Nelson D., O'Donnell K., Ouellet T., Qi W. H., Quesneville H., Roncero M. I. G., Seong K. Y., Tetko I. V., Urban M., Waalwijk C., Ward T. J., Yao J. Q., Birren B. W. & Kistler H. C. (2007). The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317, 1400–1402.
39. D'Allesandro M., Hiltpold I., Von Merey G. & Turlings T. C. J. (2009). Prospects for exploiting herbivore-induced plant volatiles to enhance biological control in maize. In Proceedings of the 3rd International Symposium on Biological Control of Arthropods, Christchurch, New Zealand, February 8–13, 2009 (Eds Mason P. G., Gillespie D. R. & Vincent C. ), pp. 433–443. Washington, DC: USDA Forest Service.
40. De Lacy Costello B. P. J., Ewen R. J., Gunson H. E., Ratcliffe N. M. & Spenser-Phillips P. T. N. (2000). The development of a sensor system for the early detection of soft rot in stored potato tubers. Measurement Science and Technology 11, 1685–1691.
41. De Vleesschauwer D. & Höfte M. (2009). Rhizobacteria-Induced systemic resistance. Advances in Botanical Research 51, 223–281.
42. Degenhardt J., Hiltpold I., Kollner T. G., Frey M., Gierl A., Gershenzon J., Hibbard B. E., Ellersieck M. R. & Turlings T. C. J. (2009). Restoring a maize root signal that attracts insect-killing nematodes to control a major pest. Proceedings of the National Academy of Sciences USA 103, 13213–13218.
43. Dinsdale E. A., Edwards R. A., Hall D., Angly F., Breitbart M., Brulc J. M., Furlan M., Desnues C., Haynes M., Li L., McDaniel L., Moran M. A., Nelson K. E., Nilsson C., Olson R., Paul J., Rodiguez Brito B., Ruan Y., Swan B. K., Stevens R., Valentine D. L., Thurber R. V., Wegley L., White B. A. & Rohwer F. (2008). Functional metagenomic profiling of nine biomes. Nature 452, 629–633.
44. Dixon S. J. & Stockwell B. R. (2009). Identifying druggable disease-modifying gene products. Current Opinion in Chemical Biology 13, 549–555.
45. FAO (2009). Post-harvest Losses Aggravate Hunger: Improved Technology and Training Show Success in Reducing Losses. News item of 2 November 2009. Rome: FAO. Available online at: www.fao.org/news/story/0/item/36844/icode/en/ (verified 22 October 2010).
46. Fedoroff N. V., Battisti D. S., Beachy R. N., Cooper P. J. M., Fischhoff D. A., Hodges C. N., Knauf V. C., Lobell D., Mazur B. J., Molden D., Reynolds M. P., Ronald P. C., Rosegrant M. W., Sanchez P. A., Vonshak A. & Zhu J-K. (2010). Radically rethinking agriculture for the 21st century. Science 327, 833–834.
47. Fenton B., Margaritopoulos J. T., Malloch G. L. & Foster S. P. (2010). Micro-evolutionary change in relation to insecticide resistance in the peach-potato aphid, Myzus persicae. Ecological Entomology 1 (Suppl. 35), 131–146.
48. Freeman J. & Ward E. (2004). Gaeumannomyces graminis, the take-all fungus and its relatives. Molecular Plant Pathology 5, 235–252.
49. Friedrich L., Lawton K., Dietrich R., Willits M., Cade R. & Ryals J. (2001). NIM1 overexpression in Arabidopsis potentiates plant disease resistance and results in enhanced effectiveness of fungicides. Molecular Plant–Microbe Interactions 14, 1114–1124.
50. Fuller V. L., Lilley C. J. & Urwin P. E. (2008). Nematode resistance. New Phytologist 180, 27–44.
51. Gilligan C. A. & Van Den Bosch F. (2008). Epidemiological models for invasion and persistence of pathogens. Annual Review of Phytopathology 46, 385–418.
52. Gisi U., Sierotzki H., Cook A. & McCaffery A. (2002). Mechanisms influencing the evolution of resistance to Qo inhibitor fungicides. Pest Management Science 58, 859–867.
53. Glazebrook J. (2005). Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annual Review of Phytopathology 43, 205–227.
54. Godfray H. C. J., Beddington J. R., Crute I. R., Haddad L., Lawrence D., Muir J. F., Pretty J., Robinson S., Thomas S. M. & Toulmin C. (2010). Food Security: the challenge of feeding 9 billion people. Science 327, 812–818.
55. Goellner K. & Conrath U. (2008). Priming: it's all the world to induced disease resistance. European Journal of Plant Pathology 121, 233–242.
56. Gorlach J., Volrath S., Knauf-Beiter G., Hengy G., Beckhove U., Kogel K. H., Oostendorp M., Staub T., Ward E., Kessmann H. & Ryals J. (1996). Benzothiadiazole, a novel class of inducers of systemic acquired resistance, activates gene expression and disease resistance in wheat. The Plant Cell 8, 629–643.
57. Gray M. E., Sappington T. W., Miller N. J., Moeser J. & Bohn M. O. (2009). Adaptation and invasiveness of Western Corn Rootworm: intensifying research on a worsening pest. Annual Review of Entomology 54, 303–321.
58. Grimmelikhuijzen C. J. P., Cazzamali G., Williamson M. & Hauser F. (2007). The promise of insect genomics. Pest Management Science 63, 413–416.
59. Haas B.J., Kamoun S., Zody M.C., Jiang R.H.Y., Handsaker R.E., Cano L.M., Grabherr M., Kodira C.D., Raffaele S., Torto-Alalibo T., Bozkurt T.O., Ah-Fong A.M.V., Alvarado L., Anderson V.L., Armstrong M.R., Avrova A., Baxter L., Beynon J., Boevink P.C., Bollmann S.R., Bos J.I.B., Bulone V., Cai G., Cakir C., Carrington J.C., Chawner M., Conti L., Costanzo S., Ewan R., Fahlgren N., Fischbach M.A., Fugelstad J., Gilroy E.M., Gnerre S., Green P.J., Grenville-Briggs L.J., Griffith J., Grünwald N.J., Horn K., Horner N.R., Hu C.-H., Huitema E., Jeong D.-H., Jones A.M.E., Jones J.D.G., Jones R.W., Karlsson E.K., Kunjeti S.G., Lamour K., Liu Z., Ma L.J., MacLean D., Chibucos M.C., McDonald H., McWalters J., Meijer H.J.G., Morgan W., Morris P.F., Munro C.A., O'Neill K., Ospina-Giraldo M., Pinzón A., Pritchard L., Ramsahoye B., Ren Q., Restrepo S., Roy S., Sadanandom A., Savidor A., Schornack S., Schwartz D.C., Schumann U.D., Schwessinger B., Seyer L., Sharpe T., Silvar C., Song J., Studholme D.J., Sykes S., Thines M., van de Vondervoort P.J.I., Phuntumart V., Wawra S., Weide R., Win J., Young C., Zhou S., Fry W., Meyers B.C., van West P., Ristaino J., Govers F., Birch P.R.J., Whisson S.C., Judelson H.S. & Nusbaum C. (2009). Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461, 393–398.
60. Hammerschmidt R. (2009). Systemic acquired resistance. Advances in Botanical Research 51, 173–222.
61. Hammond-Kosack K. E. & Parker J. E. (2003). Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Current Opinions in Biotechnology 14, 177–193.
62. Harwood J. D., Phillips S. W., Lello J., Sunderland K. D., Glen D. M., Bruford M. W., Harper G. L. & Symondson W. O. C. (2009). Invertebrate biodiversity affects predator fitness and hence potential to control pests in crops. Biological Control 51, 499–506.
63. Hassanali A., Herren H., Khan Z. R., Pickett J. A. & Woodcock C. M. (2008). Integrated pest management: the push-pull approach for controlling insect pests and weeds of cereals, and its potential for other agricultural systems including animal husbandry. Philosophical Transactions of the Royal Society B-Biological Sciences 363, 611–621.
64. Heil M., Hilpert A., Kaiser W. & Linsenmair K. E. (2000). Reduced growth and seed set following chemical induction of pathogen defence: does systemic acquired resistance (SAR) incur allocation costs? Journal of Ecology 88, 645–654.
65. Herrgård M.J., Swainston N., Dobson P., Dunn W.B., Arga K.Y., Arvas M., Blüthgen N., Borger S., Costenoble R., Heinemann M., Hucka M., Le Novère N., Li P., Liebermeister W., Mo M.L., Oliveira A.P., Petranovic D., Pettifer S., Simeonidis E., Smallbone K., Spasić I., Weichart D., Brent R., Broomhead D.S., Westerhoff H.V., Kirdar B., Penttilä M., Klipp E., Palsson B.Ø., Sauer U., Oliver S.G., Mendes P., Nielsen J. & Kell D.B. (2008). A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nature Biotechnology 26, 1155–1160.
66. Hofinger B. J., Jing H-C., Hammond-Kosack K. E. & Kanyuka K. (2009). High resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theoretical and Applied Genetics 119, 851–865.
67. Hooper A. M., Dufour S., Willaert S., Pouvreau S. & Pickett J. A. (2007). Synthesis of (2S, 7S)-dibutyroxynonane, the sex pheromone of the orange wheat blossom midge, Sitodiplosis mosellana (Gehin) (Diptera:Cecidomyiidae), by diasteroselective silicon-tethered ring-closing metathesis. Tetrahedron Letters 48, 5991–5994.
68. Hooper A. M., Hassanali A., Chamberlain K., Khan Z. & Pickett J. A. (2009). New genetic opportunities from legume intercrops for controlling Striga spp. parasitic weeds. Pest Management Science 65, 546–552.
69. Huang Y. J., Balesdent M. H., Li Z.-Q., Evans N., Rouxell T. & Fitt B. D. L. (2010). Fitness cost of virulence differs between the AvrLm1 and AvrLm4 loci in Leptosphaeria maculans (phoma stem canker of oilseed rape). European Journal of Plant Pathology 126, 279–291.
70. Huang Y.-J., Li Z-Q., Evans N., Rouxel T., Fitt B. D. L. & Balesdent M-H. (2006). Fitness cost associated with loss of the AvrLm4 avirulence function in Leptosphaeria maculans (phoma stem canker of oilseed rape). European Journal of Plant Pathology 114, 77–89.
71. Jones J. D. G. & Dangl J. L. (2006). The plant immune system. Nature 444, 323–329.
72. Jones J. T., Kumar A., Pylypenko L. A., Thirugnanasambandam A., Castelli L., Chapman S., Cock P. J. A., Grenier E., Lilley C. J., Phillips M. S. & Blok V. C. (2009). Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida. Molecular Plant Pathology 10, 815–828.
73. Kamoun S. (2006). A catalogue of the effector secretome of plant pathogenic Oomycetes. Annual Review of Phytopathology 44, 41–60.
74. Khan Z. R., Amudavi D. M., Midega C. A. O., Wanyama J. M. & Pickett J. A. (2008 a). Farmers’ perceptions of a ‘push-pull’ technology for control of cereal stemborers and Striga weed in western Kenya. Crop Protection 27, 976–987.
75. Khan Z. R., James D. G., Midega C. A. O. & Pickett J. A. (2008 b). Chemical ecology and conservation biological control. Biological Control 45, 210–224.
76. Kos M., Van Loon J. A., Dick M. & Vet L. E. M. (2009). Transgenic plants as vital components of integrated pest management. Trends in Biotechnology 27, 621–627.
77. Lucas J. A. (1999). Plant immunisation: from myth to SAR. Pesticide Science 55, 193–196.
78. Ma L.-J., Van Der Does H. C., Borkovich K. A., Coleman J. J., Daboussi M.-J., Di Pietro A., Dufresne M., Freitag M., Grabherr M., Henrissat B., Houterman P. M., Kang S., Shim W.-B., Woloshuk C., Xie X., Xu J.-R., Antoniw J., Baker S. E., Bluhm B. H., Breakspear A., Brown D. W., Butchko R. A. E., Chapman S., Coulson R., Coutinho P. M., Danchin E. G. J., Diener A., Gale L. R., Gardiner D. M., Goff S., Hammond-Kosack K. E., Hilburn K., Hua-Van A., Jonkers W., Kazan K., Kodira C. D., Koehrsen M., Kumar L., Lee Y-H., Li L., Manners J. M., Miranda-Saavedra D., Mukherjee M., Park G., Park J., Park S-Y., Proctor R. H., Regev A., Ruiz-Roldan M. C., Sain D., Sakthikumar S., Sykes S., Schwartz D. C., Turgeon B. G., Wapinski I., Yoder O., Young S., Zeng Q., Zhou S., Galagan J., Cuomo C. H., Kistlerh C. & Rep M. (2010). Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464, 367–373.
79. Makandar R., Essig J. S., Schapaugh M. A., Trick H. N. & Shah J. (2006). Genetically engineered resistance to Fusarium head blight in wheat by expression of Arabidopsis NPR1. Molecular Plant–Microbe Interactions 19, 123–129.
80. Malnoy M., Jin Q., Borejsza-Wysocka E. E., He S. Y. & Aldwinckle H. S. (2007). Overexpression of the apple MpNPR1 gene confers increased disease resistance in malus×domestica. Molecular Plant–Microbe Interactions 20, 1568–1580.
81. Markom M. A., Shakaff A. Y. M., Adom A. H., Ahmad N. M., Hidayat W., Abdullah A. H. & Fikri N. A. (2009). Intelligent electronic nose system for basal stem rot disease detection. Computers and Electronics in Agriculture 66, 140–146.
82. Mchale L., Tan X., Koehl P. & Michelmore R. W. (2006). Plant NBS-LRR proteins: adaptable guards. Genome Biology 7, 212·1–212·11.
83. Miller S. A., Beed F. D. & Harmon C. L. (2009). Plant disease diagnostic capabilities and networks. Annual Review of Phytopathology 47, 15–38.
84. Millet Y. A., Danna C. H., Clay N. K., Songnuan W., Simon M. D., Werck-Reichhart D. & Ausubel F. M. (2010). Innate immune responses activated in Arabidopsis roots by microbe-associated molecular patterns. Plant Cell 22, 973–990.
85. Milus E. A., Kristensen K. & Hovmøller M. S. (2009). Evidence for increased aggressiveness in a recent widespread strain of Puccinia striiformis f. sp. tritici causing Stripe Rust of wheat. Phytopathology 99, 89–94.
86. Nallur G., Luo C. H., Fang L. H., Cooley S., Dave V., Lambert J., Kukanskis K., Kingsmore S., Lasken R. & Schweitzer B. (2001). Signal amplification by rolling circle amplification on DNA microarrays. Nucleic Acids Research 29, e118.
87. Nauen R. & Denholm I. (2005). Resistance of insect pests to neonicotinoid insecticides: current status and future prospects. Archives of Insect Biochemistry and Physiology 58, 200–215.
88. Nayak M., Kotian A., Marathe S. & Chakravortty D. (2009). Detection of microorganisms using biosensors-A smarter way towards detection techniques. Biosensors and Bioelectronics 25, 661–667.
89. Nielson K. M. (2003). Transgenic organisms – time for conceptual diversification. Nature Biotechnology 21, 227–228.
90. Nurnberger T. & Kemmerling B. (2009). PAMP-triggered basal immunity in plants. Advances in Botanical Research 51, 1–38.
91. Oberhardt M. A., Palsson B. O. & Papin J. A. (2009). Applications of genome-scale metabolic reconstructions. Molecular Systems Biology 5, 320. doi:10.1038/msb.2009.77.
92. Oerke E. C. (2006). Crop losses to pests. Journal of Agricultural Science, Cambridge 144, 31–43.
93. Oostendorp M., Kunz W., Dietrich B. & Staub T. (2001). Induced disease resistance in plants by chemicals. European Journal of Plant Pathology 107, 19–28.
94. Pare P. W. & Tumlinson J. H. (1999). Plant volatiles as a defense against insect herbivores. Plant Physiology 121, 325–331.
95. Parnell S., Gottwald T. R., Van Den Bosch F. & Gilligan C. A. (2009). Optimal strategies for the eradication of Asiatic Citrus Canker in heterogeneous host landscapes. Phytopathology 99, 1370–1376.
96. Pavan S., Jacobsen E., Visser R. G. F. & Bai Y. (2010). Loss of susceptibility as a novel breeding strategy for durable and broad-spectrum resistance. Molecular Breeding 25, 1–12.
97. Perovic D., Forster J., Devaux P., Hariri D., Guilleroux M., Kanyuka K., Lyons R., Weyen J., Feuerhelm D., Kastirr U., Sourdille P., Röder M. & Ordon F. (2009). Mapping and diagnostic marker development for soil-borne cereal mosaic virus resistance in bread wheat. Molecular Breeding 23, 641–653.
98. Pink D., Bailey L., McClement S., Hand P., Mathas E., Buchanan-Wollaston V., Astley D., King G. & Teakle G. (2008). Doubled haploids, markers and QTL analysis in vegetable brassicas. Euphytica 164, 509–514.
99. Puinean A. M., Foster S. P., Oliphant L., Denholm I., Field L. M., Millar N. S., Williamson M. S. & Bass C. (2010). Amplification of a cytochrome P450 gene is associated with resistance to neonicotinoid insecticides in the aphid Myzus persicae. PLoS Genetics 6, e1000999. doi:10.1371/journal.pgen.1000999.
100. Quilis J., Peñas G., Messeguer J., Brugidou C. & San Segundo B. (2008). The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitvity to abiotic stresses in transgenic rice. Molecular Plant–Microbe Interactions 21, 1215–1231.
101. Robaglia C. & Caranta C. (2006). Translation initiation factors: a weak link in plant RNA virus infection. Trends in Plant Science 11, 40–45.
102. Rosi N. L. & Mirkin C. A. (2005). Nanostructures in biodiagnostics. Chemical Reviews 105, 1547–1562.
103. Rosso M. N., Jones J. T. & Abad P. (2009). RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology 47, 207–232.
104. Roy H. E., Brodie E. L., Chandler D., Goettel M. S., Pell J. K., Wajnberg E. & Vega F. E. (2010). Deep space and hidden depths: understanding the evolution and ecology of fungal entomopathogens. Biocontrol 55, 1–6.
105. Royal Society (2009). Reaping the Benefits: Science and the Sustainable Intensification of Global Agriculture. RS Policy Document 11/09. London: Royal Society.
106. Ruiz-Garcia L., Lunadei L., Barreiro P. & Robla I. (2009). A review of wireless sensor technologies and applications in agriculture and food industry: state of the art and current trends. Sensors 9, 4728–4750.
107. Ryan P. R., Dessaux Y., Thomashow L. S. & Weller D. M. (2009). Rhizosphere engineering and management for sustainable agriculture. Plant and Soil 321, 363–383.
108. Sanchez-Gracia A., Vieira F. G. & Rozas J. (2009). Molecular evolution of the major chemosensory gene families in insects. Heredity 103, 208–216.
109. Scherkenbeck J. & Zdobinsky T. (2009). Insect neuropeptides: structures, chemical modifications and potential for insect control. Bioorganic and Medicinal Chemistry 17, 4071–4084.
110. Schnee C., Köllner T. G., Held M., Turlings T. C. J., Gershenzon J. & Degenhardt J. (2006). The products of a single maize sesquiterpene synthase form a volatile defense signal that attracts natural enemies of maize herbivores. Proceedings of the National Academy of Sciences USA 103, 1129–1134.
111. Schouten H. J., Krens F. A. & Jacobsen E. (2006). Do cisgenic plants warrant less stringent oversight? Nature Biotechnology 24, 753.
112. Scofield S. R. & Nelson R. S. (2009). Resources for virus-induced gene silencing in the grasses. Plant Physiology 149, 152–158.
113. Siddiqui I. A., Atkins S. D. & Kerry B. R. (2009). Relationship between saprotrophic growth in soil of different biotypes of Pochonia chlamydosporia and the infection of nematode eggs. Annals of Applied Biology 155, 131–141.
114. Singh R. P., Hodson D. P., Huerta-Espino J., Jin Y., Njau P., Wanyera R., Herrera-Foessel S. A. & Ward R. W. (2008). Will stem rust destroy the world's wheat crop? Advances in Agronomy 98, 271–309.
115. Singh R. P. & Huertaespino J. (1997). Effect of leaf rust resistance gene Lr34 on grain yield and agronomic traits of spring wheat. Crop Science 37, 390–395.
116. Smith J. J., Waage J., Woodhall J. W., Bishop S. J. & Spence N. J. (2008). The challenge of providing plant pest diagnostic services for Africa. European Journal of Plant Pathology 121, 365–375.
117. Stahl E. A. & Bishop J. G. (2000). Plant-pathogen arms races at the molecular level. Current Opinion in Plant Biology 3, 299–304.
118. Tan G., Gyllenhaal C. & Soejarto D. D. (2006). Biodiversity as a source of anticancer drugs. Current Drug Targets 7, 265–277.
119. Tester M. & Langridge P. (2010). Breeding technologies to increase crop production in a changing world. Science 327, 818–822.
120. Tezcan H. & Akbudak N. (2009). Effects of foliar application of harpin protein against Verticillium dahliae on pepper grown in greenhouse conditions. Journal of Food Agriculture and Environment 7, 529–533.
121. The International Aphid Genomics Consortium (2010). Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biology 8, e1000313. doi:10.1371/journal.pbio.1000313.
122. Tribolium Genome Sequencing Consortium (2008). The genome of the model beetle and pest Tribolium castaneum. Nature 452, 949–955.
123. Tsuda K., Sato M., Stoddard T., Glazebrook J. & Katagiri F. (2009). Network properties of robust immunity in plants. PLoS Genetics 5, 12 e1000772. doi:10.1371/journal.pgen.1000772.
124. Van Der Ent S., Van Hulten M., Pozo M. J., Czechowski T., Udvardi M. K., Pieterse C. M. J. & Ton J. (2009). Priming of plant innate immunity by rhizobacteria and beta-aminobutyric acid: differences and similarities in regulation. New Phytologist 183, 419–431.
125. Van Der Goes Van Naters W. & Carlson J. R. (2006). Insects as chemosensors of humans and crops. Nature 444, 302–307.
126. Van Hulten M., Pelser M., Van Loon L. C., Pieterse C. M. J. & Ton J. (2006). Costs and benefits of priming for defense in Arabidopsis. Proceedings of the National Academy of Sciences USA 103, 5602–5607.
127. Van Verk M. C., Gatz C. & Linthorst H. J. M. (2009). Transcriptional regulation of plant defence. Advances in Botanical Research 51, 397–438.
128. Verhagen B. W. M., Glazebrook J., Zhu T., Chang H. S., Van Loon L. C. & Pieterse C. M. J. (2004). The transcriptome of rhizobacteria-induced systemic resistance in Arabidopsis. Molecular Plant–Microbe Interactions 17, 895–908.
129. Webster B., Bruce T., Pickett J. & Hardie J. (2010). Volatiles functioning as host cues in a blend become nonhost cues when presented alone to the black bean aphid. Animal Behaviour 79, 451–457.
130. Weller D. M., Landa B. B., Mavrodi O. V., Schroeder K. L., De La Fuente L., Bloui Bankhead S., Allende Molar R., Bonsall R. F., Mavrodi D. V. & Thomashow L. S. (2007). Role of 2, 4-diacetylphloroglucinol-producing fluorescent Pseudomonas spp. in the defense of plant roots. Plant Biology 9, 4–20.
131. West J. S., Atkins S. D., Emberlin J. & Fitt B. D. L. (2008). PCR to predict risk of airborne disease. Trends in Microbiology 16, 380–387.
132. West J. S., Bravo C., Oberti R., Lemaire D., Moshou D. & Mccartney H. A. (2003). The potential of optical canopy measurement for targeted control of field crop diseases. Annual Review of Phytopathology 41, 593–614.
133. West J. S., Bravo C., Oberti R., Moshou D., Ramon H. & McCartney H. A. (2010). Detection of fungal diseases optically and pathogen inoculum by air sampling. In Precision Crop Protection – The Challenge and Use of Heterogeneity (Eds Oerke E.-C., Gerhards R., Menz G. & Sikora R. A. ), pp. 135–149. Dordrecht, The Netherlands: Springer Science.
134. Winnenburg R., Urban M., Beacham A., Baldwin T. K., Holland S., Lindeberg M., Hansen H., Rawlings C., Hammond-Kosack K. E. & Kohler J. (2008). PHI-base update: additions to the pathogen–host interaction database. Nucleic Acids Research 36, D572–D576.
135. De Wit P. J. G. M., Mehrabi R., Van Den Burg H. A. & Stergiopoulos I. (2009). Fungal effector proteins: past, present and future. Molecular Plant Pathology 10, 735–747.
136. Yi H. S., Heil M., Adame-Alvarez R. M., Ballhorn D. J. & Ryu C. M. (2009). Airborne induction and priming of plant defences against a bacterial pathogen. Plant Physiology 151, 2152–2161.
137. Zhou J.-J., He X.-L., Pickett J. A. & Field L. M. (2008). Identification of odorant-binding proteins of the yellow fever mosquito Aedes aegypti: genome annotation and comparative analyses. Insect Molecular Biology 17, 147–163.