Modelling the impact of Siboglinids on the biogeochemistry of the Captain Arutyunov mud volcano (Gulf of Cadiz)

Biogeosciences

Volumn 9, Issue 12, 2012, Pages 5341-5352

  Soetaert, K ^a   Van Oevelen, D ^a   Sommer, S ^b  

^a ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^b GEOMAR HELMHOLTZ CENTRE FOR OCEAN RESEARCH KIEL   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; BIOGEOCHEMISTRY; ENDOSYMBIONT; GROWTH RATE; INVERTEBRATE; MUD VOLCANO; NUMERICAL MODEL; TWO-DIMENSIONAL MODELING;

ATLANTIC OCEAN; GULF OF CADIZ;

BACTERIA (MICROORGANISMS); SIBOGLINIDAE; SIBOGLINUM; TUBICOLAE;

EID: 84872689603     PISSN: 17264170     EISSN: 17264189     Source Type: Journal    
DOI: 10.5194/bg-9-5341-2012     Document Type: Article

References (50)

1. Aller, R.: Quantifying solute distributions in the bioturbated zone of marine-sediments by defining an average micro-environment, Geochim. Cosmochim. Ac., 44, 1955-1965, 1980.
2. Amend, J., Edwards, K., and Lyons, T., (Eds.): Sulfide oxidation in marine sediments: Geochemistry meets microbiology, Special paper 379, Geological Society of America, 205 pp. 2004.
3. Arp, A., Childress, J., and Vetter, R. D.: The sulphide-binding protein in the blood of the vestimentiferan tube-worm Riftia pachyp-tila, is the extracellular haemoglobin, J. Exp. Biol., 128, 139-158, 1987.
4. Berner, R. A.: Early Diagenesis: A Theoretical Approach, Princeton Series in Geochemistry, Princeton University Press, Princeton, available at: http://books.google.nl/books?id=weRFglCVBkUC, 1980.
5. Boetius, A. and Suess, E.: Hydrate ridge: a natural laboratory for the study of microbial life fueled by methane from near-surface gas hydrates, Chem. Geol., 205, 291-310, doi:10.1016/j.chemgeo.2003.12.034, 2004. (Pubitemid 38549687)
6. Boetius, A., Ravenschlag, K., Schubert, C., Rickert, D., Wid-del, F., Gieseke, A., Amann, R., Jørgensen, B., Witte, U., and Pfannkuche, O.: A marine microbial consortium apparently mediating anaerobic oxidation of methane, Nature, 407, 623-626, doi:10.1038/35036572, 2000.
7. Boudreau, B. P.: Diagenetic models and their implementation: modelling transport and reactions in aquatic sediments, Springer, Berlin, available at: http://books.google.nl/books?id= p1bwAAAAMAAJ, 1997.
8. Cavanaugh, C. M., McKiness, Z., Newton, I., and Stewart, F.: Prokaryotes, 1, 475-507, 2006.
9. Cardoso, R. B., Sierra-Alvarez, R., Rowlette, P., Flores, E.R., Gómez, J., Field J.A.: Sulfide oxidation under chemolithotrophic denitrifying conditions, Biotechnol. Bioeng., 95, 1148-1157, doi:10.1002/bit.21084, 2006. (Pubitemid 44901330)
10. Cordes, E., Arthur, M., Shea, K., Arvidson, R., and Fisher, C.: Modeling the mutualistic interactions between tubeworms and micro-bial consortia, Plos Biol., 3, 497-506, 2005.
11. Dale, A., Sommer, S., Haeckel, M., Wallmann, K., Linke, P., We-gener, G., and Pfannkuche, O.: Pathways and regulation of carbon, sulfur and energy transfer in marine sediments overlying methane gas hydrates on the Opouawe Bank (New Zealand), Geochim. Cosmochim. Ac., 74, 5763-5784, 2010.
12. Dando, P., Bussmann, I., Niven, S., O'Hara, S., Schmaljohann, R., and Taylor, L.: A methane seep area in the Skagerrak, the habitat of the pogonophore Siboglinum poseidoni and the bivalve mollusc Thyasire sarsi, Mar. Ecol.-Prog. Ser., 107, 157-167, 1994.
13. Dando, P., Southward, A., Southward, E., Lamont, P., and Harvey, R.: Interactions between sediment chemistry and frenulate pogonophores (Annelida) in the North-East Atlantic, Deep-Sea Res. Pt. I, 55, 966-996, 2008.
14. de Beer, D., Sauter, E., Niemann, H., Kaul, N., Witte, U., Schluter, M., and Boetius, A.: In situ fluxes and zonation of mi-crobial activity in surface sediments of the Hakon Mosby Mud Volcano, Limnol. Oceanogr., 51, 1315-1331, 2006. (Pubitemid 43845287)
15. Fischer, D., Sahling, H., Nöthen, K., Bohrmann, G., Zabel, M., and Kasten, S.: Interaction between hydrocarbon seepage, chemosynthetic communities, and bottom water redox at cold seeps of the Makran accretionary prism: insights from habitat-specific pore water sampling and modeling, Biogeosciences, 9, 2013-2031, doi:10.5194/bg-9-2013-2012, 2012.
16. Freytag, J., Girguis, P., Bergquist, D., Andras, J., Childress, J., and Fisher, C.: A paradox resolved: sulfide acquisition by roots of seep tubeworms sustains net chemoautotrophy, P. Natl. Acad. Sci., 98, 13408-13413, 2001. (Pubitemid 33051376)
17. Grieshaber, M. and Völkel, S.: Animal adaptations for tolerance and exploitation of poisonous sulfide, Ann. Rev. Physiol., 60, 33-53, 1998. (Pubitemid 28157863)
18. Grigg, N., Boudreau, B., Webster, I., and Ford, P.: The nonlocal model of porewater irrigation: limits to its equivalence with a cylinder diffusion model, J. Mar. Res., 63, 437-455, 2005. (Pubitemid 40900021)
19. Haese, R. R., Meile, C., Van Cappellen, P., and De Lange, G. J.: Carbon geochemistry of cold seeps: methane fluxes and transformation in sediments from Kazan mud volcano, Eastern Mediterranean Sea, Earth Planet. Sci. Lett., 212, 361-375, doi:10.1016/S0012-821X(03)00226-7, 2003. (Pubitemid 36915143)
20. Hensen, C., Nuzzo, M., Hornibrook, E., Pinheiro, L., Bock, B., Ma-galhaes, V., and Bruckmann, W.: Sources of mud volcano fluids in the Gulf of Cadiz-indications for hydrothermal imprint, Geochim. Cosmochim. Ac., 71, 1232-1248, 2007. (Pubitemid 46238057)
21. Hentschel, U., Cary, S. C., and Felbeck, H.: Nitrate respiration in chemoautotrophic symbionts of the bivalve Lucinoma ae-quizonata, Mar. Ecol.-Prog. Ser., 94, 35-41, 1993.
22. Hilario, A., Johnson, S., Cunha, M., and Vrijenhoek, R.: High diversity of frenulates (Polychaeta:Siboglinidae) in the Gulf of Cadiz mud volcanoes: a DNA taxonomy analysis, Deep-Sea Res. Pt. I, 57, 143-150, 2010.
23. Jørgensen, B. and Nelson, D. C.: Sulfide oxidation in marine sediments: Geochemistry meets microbiology, in Sulfur Biogeo-chemistry-Past and present, edited by: Amend, J. P., Edwards, K. J., and Lyons, T. W., Geological Society of America Special Paper, 379, 63-81, 2004.
24. Jørgensen, B. and Revsbech, N.: Diffusive boundary layers and the oxygen uptake of sediments and detritus, Limnol. Oceanogr., 30, 111-122, 1985.
25. Judd, A. G. and Hovland, M.: Seabed Fluid Flow, The Impact on Geology, Biology and the Marine Environment, Cambridge University Press, Cambridge, 2007.
26. Kruger, M., Treude, T., Wolters, H., Nauhaus, K., and Boetius, A.: Microbial methane turnover in different marine habitats, Palaeo-geogr. Palaeocl., 227, 6-17, doi:10.1016/j.palaeo.2005.04.031, 2005. (Pubitemid 41446263)
27. Levin, L. A.: Ecology of cold seep sediments: interactions of fauna with flow, chemistry and microbes, Oceanogr. Mar. Biol., 43, 1-46, 2005. (Pubitemid 43763666)
28. Little, C. and Gupta, B. L.: Studies on pogonophora, III. Uptake of nutrients, J. Exp. Biol., 51, 759-773, 1969.
29. Luff, R., Wallmann, K., and Aloisi, G.: Numerical modeling of carbonate crust formation at cold vent sites: significance for fluid and methane budgets and chemosynthetic biological communities, Earth Planet. Sci. Lett., 221, 337-353, 2004. (Pubitemid 38554974)
30. Malinverno, A. and Pohlman, J. W.: Modeling sulfate reduction in methane hydrate-bearing continental margin sediments: does a sulfate-methane transition require anaerobic oxidation of methane?, Geochem. Geophys. Geosy., 12, Q07006, doi:10.1029/2011GC003501, 2011.
31. Martens, C. S. and Berner, R. A.: Interstitial water chemistry of anoxic Long Island Sound sediments, Limnol. Oceanogr., 22, 10-25, 1977.
32. Nielsen, L.P., Risgaard-Petersen, N., Fossing, H., Christensen, P. B. and Sayami, M.: Electric currents couple spatially separated bio-geochemical processes in marine sediment, Nature, 463, 1071-1074, 2010.
33. Niemann, H., Duarte, J., Hensen, J., Omoregie, E., Magal-haes, V. H., Elvert, M., Pinheiro, L. M., Kopf, A., and Boetius, A.: Microbial methane turnover at mud volcanoes of the Gulf of Cadiz, Geochim. Cosmochim. Ac., 70, 5336-5355, 2006. (Pubitemid 44739671)
34. R Development Core Team: R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, available at: http://www.R-project.org, ISBN 3-900051-07-0, 2012.
35. Reeburgh, W. S.: Soft spots in the global methane budget, Kluwer Academic Publishers, Dordrecht, 1996.
36. Regnier, P., Dale, A. W., Arndt, S., LaRowe, D. E., Mogol-lon, J., and Van Cappellen, P.: Quantitative analysis of anaerobic oxidation of methane (AOM) in marine sediments: a modeling perspective, Earth-Sci. Rev., 106, 105-130, doi:10.1016/j.earscirev.2011.01.002, 2011.
37. Schmaljohan, R.: Oxidation of various potential-energy sources by the methanotrophic endosymbionts of Siboglinum poseidoni (Pogonophora), Mar. Ecol.-Prog. Ser., 76, 143-148, 1991.
38. Sibuet, M. and Olu, K.: Biogeography, biodiversity and fluid dependence of deep-sea cold-seep communities at active and passive margins, Deep-Sea Res. Pt. II, 45, 517-567, 1998. (Pubitemid 28338374)
39. Soetaert, K. and Herman, P. M. J.: A Practical Guide to Ecological Modelling, Using R as a Simulation Platform, Springer, Berlin, ISBN 978-1-4020-8623-6, 2009.
40. Soetaert, K. and Meysman, F.: Reactive transport in aquatic ecosystems: Rapid model prototyping in the open source software R, Environ. Model. Softw., 32, 49-60, 2012.
41. Soetaert, K., Petzoldt, T., and Meysman, F.: marelac: Tools for Aquatic Sciences, available at: http://R-Forge.R-project.org/projects/marelac/2012, R package version 2.1.1, 2012.
42. Sommer, S., Tuerk, M., Kriwanek, S., and Pfannkuche, O.: Gas exchange system for extended in situ benthic chamber flux measurements under controlled oxygen conditions: First application-sea bed methane emission measurements at Captain Arutyunov mud volcano, Limnol. Oceanogr.-Meth., 6, 23-33, 2008. (Pubitemid 351773946)
43. Sommer, S., Linke, P., Pfannkuche, O., Schleicher, T., Schneider, V., Deimling, J., Reitz, A., Haeckel, M., Fløgel, S., and Hensen, C.: Seabed methane emissions and the habitat of frenulate tube-worms on the Captain Arutyunov mud volcano (Gulf of Cadiz), Mar. Ecol.-Prog. Ser., 382, 69-86, 2009.
44. Southward, A. and Southward, E.: Notes on the biology of some pogonophores, J. Mar. Biol. Assoc. UK, 43, 57-64, 1963.
45. Southward, A., Southward, E. C., Brattegard, T., and Bakke, T.: Further experiments on the value of dissolved organic matter as food for Siboglinum fiordicum (Pogonophora), J. Mar. Biol. Assoc. UK, 59, 133-148, 1979.
46. Southward, A., Southward, E., Dando, P., Barrett, R., and Ling, R.: Chemoautotrophic function of bacterial symbionts in small Pogonophora, J. Mar. Biol. Assoc. UK, 66, 415-437, 1986.
47. Stief, P., Poulsen, M., Nielsen L. P., Brix, H., and Schram, A: Nitrous oxide emission by aquatic macrofauna, P. Natl. Acad. Sci., 106, 4296-4300, 2009.
48. Terwilliger, R., Terwilliger, N., Hughes, G., Southward, A., and Southward, E.: Studies on the haemoglobin of the small Pogonophora, J. Mar. Biol. Assoc. UK, 67, 219-234, 1987.
49. Valentine, D. L.: Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review, Anton. Leeuw., 81, 271-282, 2002. (Pubitemid 35314616)
50. Wallmann, K., Linke, P., Suess, E., Bohrmann, G., Sahling, H., Schluter, M., Dahlmann, A., Lammers, S., Greinert, J., and von Mirbach, N.: Quantifying fluid flow, solute mixing, and biogeochemical turnover at cold vents of the eastern Aleutian subduction zone, Geochim. Cosmochim. Ac., 61, 5209-5219, doi:10.1016/S0016-7037(97)00306-2, 1997.