Fine mapping of a QTL for the number of spikelets per panicle by using near-isogenic lines derived from an interspecific cross between Oryza sativa and Oryza minuta

Plant Breeding

Volumn 132, Issue 1, 2013, Pages 70-76

  Balkunde, Sangshetty ^a   Le, Hung Linh ^b   Lee, Hyun Sook ^a   Kim, Dong Min ^a   Kang, Ju Won ^a   Ahn, Sang Nag ^a  

^a Chungnam National University   (South Korea)

^b Agricultural Genetics Institute   (Viet Nam)

Author keywords

Fine mapping; Near isogenic line; QTL; Rice; Spikelet per panicle

Indexed keywords

JAPONICA; ORYZA; ORYZA MINUTA; ORYZA SATIVA;

EID: 84872651283     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/pbr.12020     Document Type: Article

References (31)

1. Aloni, R., E. Aloni, M. Langhans, and C. I. Ullrich, 2006: Role of auxin in regulating Arabidopsis flower development. Planta 223, 315-328.
2. Ammiraju, J. S., M. Luo, J. L. Goicoechea, W. Wang, D. Kudrna, C. Mueller, J. Talaq, H. Kim, N. B Sisneros, B. Blackmon, E. Fanq, J. B. Tomkins, D. Brar, D. MacKill, S. McCouch, N. Kurata, G. Lambert, D. W. Galbraith, K. Arumuganathan, K. Rao, J. G. Walling, N. Gill, Y. Yu, P. SanMiquel, C. Soderlund, S. Jackson, and R. A. Wing, 2006: The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res. 16, 140-147.
3. Ashikari, M., H. Sakakibara, S. Lin, T. Yamamoto, T. Takashi, A. Nishimura, E. Angeles, Q. Qian, H. Kitano, and M. Matsuoka, 2005: Cytokinin oxidase regulates rice grain production. Science 309, 741-745.
4. Bartling, D., M. Seedore, R. C. Schmidt, and E. W. Weiler, 1994: Molecular characterization of two cloned nitrilases from Arabidopsis thaliana: key enzyme in biosynthesis of the plant hormone indole-3-acetic acid. Proc. Natl Acad. Sci. USA 91, 6021-6025.
5. Causse, M. A., T. M. Fulton, Y. G. Cho, S. N. Ahn, J. Chunwongse, K. S. Wu, J. Xiao, Z. H. Yu, P. C. Ronald, S. E. Harrington, G. Second, S. R. McCouch, and S. D. Tanksley, 1994: Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138, 1251-1274.
6. Garg, A. K., J. K. Kim, T. G. Owens, A. P. Ranwala, Y. D. Choi, L. V. Kochian, and R. J. Wu, 2002: Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc. Natl Acad. Sci. USA 99, 15898-15903.
7. Hanson, D. D., D. S. Hamilton, J. L Travis, D. M. Bashe, and J. P. Mascarenhas, 1989: Characterization of a pollen-specific cDNA clone from Zea mays and its expression. Plant Cell 1, 173-179.
8. Hua, J. P., Y. Z. Xing, C. G. Xu, X. L. Sun, S. B. Yu, and Q. Zhang, 2002: Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance. Genetics 162, 1885-1895.
9. Ikeda, K., M. Ito, N. Nagasawa, J. Kyozuka, and Y. Nagato, 2007: Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate. Plant J. 51, 1030-1040.
10. Juliano, B. O., 1971: A simplified assay for milled rice amylase. Cereals Sci. Today 16, 334-338.
11. Kobayashi, S., Y. Fukuta, T. Yagi, T. Sato, M. Osaki, and G. S. Khush, 2004: Identification and characterization of quantitative trait loci affecting spikelet numberin rice (Oryza sativa L.). Field Crops Res. 80, 253-262.
12. Linh, H. L., F. X. Jin, K. H. Kang, Y. T. Lee, S. J. Kwon, and S. N. Ahn, 2006: Mapping quantitative trait loci for heading date and awn length using an advanced backcross line from a cross between Oryza sativa and O. minuta. Breed. Sci. 56, 341-349.
13. Linh, H. L., N. T. Hang, F. X. Jin, K. H. Kang, Y. T. Lee, K. Kwon, and S. N. Ahn, 2008: Introgression of a quantitative trait locus for Spikelets per panicle from Oryza minuta to the O. sativa cultivar Hwaseongbyeo. Plant Breed. 127, 262-267.
14. Liu, T., D. Mao, S. Zhang, C. Xu, and Y. Xing, 2009: Fine mapping SPP1, a QTL controlling the number of spikelets per panicle, to a BAC clone in rice (Oryza sativa). Theor. Appl. Genet. 118, 1509-1517.
15. McCouch, S. R., L. Teytelman, Y. Xu, K. B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing, Q. Zhang, I. Kono, M. Yano, R. Fjellstrom, G. DeClerck, G. Schneider, S. Cartinhour, D. Ware, and D. Stein, 2002: Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9, 199-207.
16. Miura, K., M. Ikeda, A. Matsubara, X. J. Song, M. Ito, K. Asano, M. Matsuoka, H. Kitano, and M. Ashikari, 2010: OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat. Genet. 42, 545-549.
17. Normanly, J., J. D. Cohen, and G. R. Fink, 1993: Arabidopsis thaliana auxotrophs reveal a tryptophan-independent biosynthetic pathway for indole-3-acetic acid. Proc. Natl Acad. Sci. USA 90, 10355-10359.
18. Ohsumi, A., T. Takai, M. Ida, T. Yamamoto, Y. Arai-Sanoh, M. Yano, T. Ando, and M. Kondo, 2011: Evaluation of yield performance in rice near-isogenic lines with increased spikelet number. Field Crops Res. 120, 68-75.
19. Onishi, K., K. Takagi, M. kontani, T. Tanaka, and Y. Sano, 2007: Different patterns of genealogical relationships found in the two major QTLs causing reduction of seed shattering during rice domestication. Genome 50, 757-766.
20. Park, W. J., V. Kriechbaumer, A. Muller, M. Piotrowski, R. B. Meeley, A. Gierl, and E. Glawischnig, 2003: The Nitrilase ZmNIT2 converts Indole-3-Acetonitrile to Indole-3-Acetic Acid. Plant Physiol. 133, 794-802.
21. Suh, J., S. N. Ahn, Y. C. Cho, K. H. Kang, I. S. Choi, Y. G. Kim, H. S. Suh, and H. G. Hwang, 2005: Mapping for QTLs for yield traits using an advanced backcross population from a cross between Oryza sativa and O. glaberrima. Korean J. Breed. 37, 214-220.
22. Terao, T., K. Nagata, K. Morino, and T. Hirose, 2010: A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice. Theor. Appl. Genet. 120, 875-893.
23. Thomson, M. J., T. H. Tai, A. M. McClung, M. E. Hinga, K. B. Lobos, Y. Xu, C. P. Martinez, and S. R. McCouch, 2003: Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor. Appl. Genet. 107, 479-493.
24. Xing, Y. Z., Y. F. Tan, J. P. Hua, X. L. Sun, C. G. Xu, and Q. Zhang, 2002: Characterization of the main effects, epistatic effects and their environmental interaction of QTLs on the genetic basis of yield traits in rice. Theor. Appl. Genet. 120, 933-942.
25. Xing, Y. Z., W. J. Tang, W. Y. Xue, C. G. Xu, and Q. Zhang, 2008: Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice. Theor. Appl. Genet. 116, 789-796.
26. Xue, W., Y. Xing, X. Weng, Y. Zhao, W. Tang, L. Wang, H. Zhou, S. Yu, C. Xu, X. Li, and Q. Zhang, 2008: Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat. Genet. 40, 761-767.
27. Yano, M., and T. Sasaki, 1997: Genetic and molecular dissection of quantitative traits in rice. Plant Mol. Biol. 35, 145-153.
28. Zhang, Y., L. Luo, C. Xu, Q. Zhang, and Y. Xing, 2006: Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa). Theor. Appl. Genet. 113, 361-368.
29. Zhang, Y., L. Luo, T. Liu, C. Xu, and Y. Xing, 2009: Four rice QTL controlling number of spikelets per panicle expressed the characteristics of single Mendelian gene in near isogenic backgrounds. Theor. Appl. Genet. 118, 1035-1044.
30. Zhou, C. J., J. Li, J. C. Zou, F. S. Liang, C. J. Ye, D. M. Jin, M. L. Weng, and B. Wang, 2006: Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS. Plant Mol. Biol. 60, 365-376.
31. Zou, J., Z. Chen, S. Zhang, W. Zhang, G. Jiang, X. Zhao, and W. Zhai, 2005: Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.). Planta 222, 604-612.