DOOSS: A tool for visual analysis of data overlaid on secondary structures

Bioinformatics

Volumn 29, Issue 2, 2013, Pages 271-272

  Golden, Michael ^a   Martin, Darren ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER GRAPHICS; COMPUTER PROGRAM; CONFORMATION; GENETICS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; NUCLEOTIDE SEQUENCE; VIRUS GENOME;

BASE SEQUENCE; COMPUTER GRAPHICS; GENOME, VIRAL; HIV-1; HUMANS; NUCLEIC ACID CONFORMATION; SOFTWARE;

MLCS; MLOWN;

EID: 84872580412     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts667     Document Type: Article

References (6)

1. Darty, K. et al. (2009) VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics, 25, 1974-1975.
2. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797. (Pubitemid 38832724)
3. Hofacker, I. et al. (2002) Secondary structure prediction for aligned RNA sequences. J. Mol. Biol., 319, 1059-1066. (Pubitemid 34729418)
4. Markham, N.R. and Zuker, M. (2008) UNAFold: software for nucleic acid folding and hybridization. Methods Mol. Biol., 453, 3-31.
5. Tuplin, A. et al. (2002) Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus. RNA, 8, 824-841. (Pubitemid 34620458)
6. Watts, J.M. et al. (2009) Architecture and secondary structure of an entire HIV-1 RNA genome. Nature, 460, 711-716.